BLASTX nr result
ID: Cinnamomum23_contig00010004
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00010004
(2564 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chro... 396 e-107
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec... 358 2e-95
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec... 358 2e-95
ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation spec... 350 3e-93
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 349 7e-93
ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Mal... 346 6e-92
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 346 6e-92
ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation spec... 345 8e-92
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr... 345 1e-91
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia... 345 1e-91
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr... 345 1e-91
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr... 345 1e-91
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 345 1e-91
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 344 2e-91
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr... 343 3e-91
ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation spec... 343 5e-91
ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation spec... 326 5e-86
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 325 9e-86
ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation spec... 324 2e-85
gb|KHG22501.1| Cleavage and polyadenylation specificity factor s... 323 6e-85
>ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Nelumbo
nucifera]
Length = 599
Score = 396 bits (1018), Expect = e-107
Identities = 204/346 (58%), Positives = 244/346 (70%), Gaps = 3/346 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDPM EEQLDYGD+EYGGGQK+Q+QG GAI ALA+EE++GEDDEYDDLYNDVNVGDGF++
Sbjct: 1 MDPMAEEQLDYGDEEYGGGQKIQYQGGGAISALAEEEMMGEDDEYDDLYNDVNVGDGFLK 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLE-SIPGVGVDSKASNVGGSFS 1931
R EA +P GG+GNGG Q+++ DG S+VP+ + E SIPGVG++ K SN+ FS
Sbjct: 61 LQ--RPEAIVPLGGIGNGGIQAQKTDGSRSRVPEPGGSQEVSIPGVGLEGKGSNMVTGFS 118
Query: 1930 NVDQKRTNFSSAKGVEGGAGNYPDGASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDS 1751
+QK+ FS+ G+E G G+YPDG SQK L+M P Q N+GFRGSAP+PPK+G D
Sbjct: 119 --EQKKGGFSAGNGLEEGTGDYPDGVSQKGRPLEMGPNAQGGNLGFRGSAPIPPKVGADP 176
Query: 1750 GQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTML 1577
Q KF G + P M +N M N +PM NEN R +++G TML
Sbjct: 177 SQXSGKFAGESSSLPDSGTAGPXSAPQMPSNRMNMNVNMNRPMXNENMNRXAVENGTTML 236
Query: 1576 FVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMN 1397
FVGELHWWTTDAELE VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 237 FVGELHWWTTDAELEXVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPAAAAACKEGMX 296
Query: 1396 GHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
GH FNGRACVVAFAS QT++QMGA+Y+NK R MND
Sbjct: 297 GHVFNGRACVVAFASXQTLKQMGAAYLNKTQMQSQSQPQGRRFMND 342
Score = 145 bits (367), Expect = 1e-31
Identities = 84/153 (54%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Frame = -2
Query: 766 GMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGETGHERGG-RSNAS-REKDR 596
GMWTDTSM GW G++HGR T ESSYG DD SDYGYGE GHERGG RSNA+ REKDR
Sbjct: 450 GMWTDTSMAGWA---GEDHGRRTGESSYGGDDGXSDYGYGEAGHERGGGRSNAATREKDR 506
Query: 595 GSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD---GYRDHXXXXXXXXXXXXXXRGQSS 425
G ERDWS NS + YR H RGQ+S
Sbjct: 507 GXERDWSGNSERRHRDERDQDWDRSDREHRYKEEKDAYRXHRQRERDWDNEDDWDRGQNS 566
Query: 424 SRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
SR SKSR+MQE+++RSRSR+ADYGKRRR+PSE
Sbjct: 567 SRSXSKSRMMQEEEYRSRSRBADYGKRRRLPSE 599
>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
gi|731372808|ref|XP_010650883.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185 isoform
X2 [Vitis vinifera] gi|731372811|ref|XP_010650886.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit CG7185 isoform X2 [Vitis vinifera]
Length = 650
Score = 358 bits (918), Expect = 2e-95
Identities = 194/347 (55%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDPM EEQLDY D+EYGG QK+ FQG GAI ALAD+EL+GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDPMAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EAP P G + G FQ+ + D P K+ + IPGV ++ K SN +
Sbjct: 61 M--HRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSN-----PH 113
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDG--ASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+K+ + KG E G+ ++ DG SQK L+M QV N+GF+GS P+P K G +
Sbjct: 114 FHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAE 173
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMG--TAANQPMVNENAGRPILDSGPTM 1580
+ K G R P ML+N MG N+PMVNEN RP +D+G TM
Sbjct: 174 PSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATM 233
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 234 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGM 293
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
NG+ FNGRACVVAFASPQT++QMGASYMNK RPMND
Sbjct: 294 NGYIFNGRACVVAFASPQTLKQMGASYMNKT--QAQSQSQGRRPMND 338
Score = 206 bits (523), Expect = 1e-49
Identities = 120/231 (51%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMG+ FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 423 MHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRG 482
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMWTDTSM GWG G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 483 MAANGMGMMGATGMDGHHAGMWTDTSMGGWG---GEEHGRRTRESSYGGDDGASDYGYGE 539
Query: 646 TGHERGGRSN-ASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD---GYRDHX 479
HE+ GRSN ASREK+RGSERDWS NS + GYRDH
Sbjct: 540 VNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHR 599
Query: 478 XXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RGQSSSR RS+SR + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 600 QRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 650
>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
isoform X1 [Vitis vinifera]
Length = 656
Score = 358 bits (918), Expect = 2e-95
Identities = 194/347 (55%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDPM EEQLDY D+EYGG QK+ FQG GAI ALAD+EL+GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 7 MDPMAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQ 66
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EAP P G + G FQ+ + D P K+ + IPGV ++ K SN +
Sbjct: 67 M--HRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSN-----PH 119
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDG--ASQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+K+ + KG E G+ ++ DG SQK L+M QV N+GF+GS P+P K G +
Sbjct: 120 FHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAE 179
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMG--TAANQPMVNENAGRPILDSGPTM 1580
+ K G R P ML+N MG N+PMVNEN RP +D+G TM
Sbjct: 180 PSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATM 239
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M
Sbjct: 240 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGM 299
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
NG+ FNGRACVVAFASPQT++QMGASYMNK RPMND
Sbjct: 300 NGYIFNGRACVVAFASPQTLKQMGASYMNKT--QAQSQSQGRRPMND 344
Score = 206 bits (523), Expect = 1e-49
Identities = 120/231 (51%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMG+ FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 429 MHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRG 488
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMWTDTSM GWG G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 489 MAANGMGMMGATGMDGHHAGMWTDTSMGGWG---GEEHGRRTRESSYGGDDGASDYGYGE 545
Query: 646 TGHERGGRSN-ASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD---GYRDHX 479
HE+ GRSN ASREK+RGSERDWS NS + GYRDH
Sbjct: 546 VNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKDHRYREEKDGYRDHR 605
Query: 478 XXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RGQSSSR RS+SR + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 606 QRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 656
>ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
[Pyrus x bretschneideri]
Length = 656
Score = 350 bits (899), Expect = 3e-93
Identities = 190/351 (54%), Positives = 231/351 (65%), Gaps = 8/351 (2%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
M+P+GEEQ+DY D+EYGG KLQ+QGSGAI ALADEEL+ EDDE+DDLYNDVNVG+GFMQ
Sbjct: 1 MEPLGEEQIDYEDEEYGGAHKLQYQGSGAISALADEELMVEDDEFDDLYNDVNVGEGFMQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EAP+P GGVGNGG Q+++ D P +V + IPGV V K S G F
Sbjct: 61 M--HRSEAPLPTGGVGNGGLQAQKTDVPEPRVQSGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+Q AK E G+ Y GAS QK +DM QV ++ F+GS MPP +G D
Sbjct: 119 QNQPPV----AKEPELGSTGYASGASGSQKGRVMDMTHDTQVRHMAFQGSTTMPPNVGVD 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPP----MLANPMGTA--ANQPMVNENAGRPILDS 1592
S + K A GPP + N M AN+PMVNEN RP +++
Sbjct: 175 SSDITGK----GNSEFVPSLNPASAGPPGATQIPTNQMSIKINANRPMVNENQIRPPIEN 230
Query: 1591 GPTMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXAC 1412
G LFVGELHWWTTDAE+E+V+SQYGRVKEIKF+DERASGKSKGYC VEF+D AC
Sbjct: 231 GSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGKSKGYCQVEFHDQAAATAC 290
Query: 1411 KDSMNGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
K+ M+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 291 KEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQGQAQAQQPGRRPMND 341
Score = 181 bits (459), Expect = 3e-42
Identities = 110/235 (46%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
M+PQ MMG+ FDPT P FP VN + L GVAPHVNPAFF
Sbjct: 426 MNPQGMMGSGFDPTYMGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFARG 485
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMW D SM WG G+EHGR TRESSYG DD AS+YGYG+
Sbjct: 486 MATNGMGMMGSSGMEGHHAGMWNDPSMGAWG---GEEHGRRTRESSYGGDDNASEYGYGD 542
Query: 646 TGHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD-------GY 491
T +E+G RS+A SRE++RGSERDWS NS Y
Sbjct: 543 TNNEKGPRSSAASRERERGSERDWSGNSERRHRDDREQDYERSERGEHREHRYKEEKDSY 602
Query: 490 RDHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RDH RGQSSSRPRS+S+ + EDDHRSRSRD DY KRRR+PSE
Sbjct: 603 RDHRQRDRDGGYEDDWDRGQSSSRPRSRSKAVPEDDHRSRSRDVDY-KRRRLPSE 656
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 349 bits (895), Expect = 7e-93
Identities = 191/347 (55%), Positives = 225/347 (64%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+DY ++EYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
+ EAP P GVGNG Q K+ D P +V + ++PGV V+ K +N G F
Sbjct: 61 --FQQPEAPPPSAGVGNGRLQVKKTDVPEQQVQAGVSQGSNVPGVSVEGKYTNAGTHFPA 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+ + + G+GNYPDGAS QK + V N+GF+GS PP+ G D
Sbjct: 119 QNDVQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPPRTGVD 175
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 1580
M + G + G + AN MG N+ MVNEN RP L++G TM
Sbjct: 176 PSNMPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACKD M
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
NGH FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMND 341
Score = 184 bits (467), Expect = 3e-43
Identities = 114/234 (48%), Positives = 125/234 (53%), Gaps = 8/234 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ+MMG FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 429 MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 487
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD+SM GW G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 488 MAANGMGMMGSSGMDGPHPGMWTDSSMGGWV---GEEHGRRTRESSYGGDDGASDYGYGE 544
Query: 646 TGHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYR 488
HE+G RS A SREKDRGSERDWS N+ YR
Sbjct: 545 ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 604
Query: 487 DHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
D RG SSSR RS+SR + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 605 DRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLPSE 658
>ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Malus domestica]
gi|657994880|ref|XP_008389756.1| PREDICTED: RNA-binding
protein FUS-like [Malus domestica]
Length = 658
Score = 346 bits (887), Expect = 6e-92
Identities = 188/347 (54%), Positives = 228/347 (65%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDPMG+EQ+DY D+EYGG QKLQ+QGSGAI ALADEE + EDDEYDDLYNDVNVG+GFMQ
Sbjct: 1 MDPMGDEQIDYEDEEYGGSQKLQYQGSGAISALADEEPMVEDDEYDDLYNDVNVGEGFMQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EAP+P GGVGNGG Q+++ + P + + IPGV V K S G F
Sbjct: 61 M--HRSEAPVPPGGVGNGGLQAQKTNVPEPRARAGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+Q AK E G+ Y GAS QK ++M QV +GF+GS +PP +G D
Sbjct: 119 QNQPPV----AKEPELGSTGYVGGASGSQKGRVMEMTHDTQVRQMGFQGSTTIPPNVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 1580
S + K G + N M AN+PMVNEN RP +++G M
Sbjct: 175 SSDITGKGNSEYIPSLNPGTAGPPGAAQIPTNQMSIKINANRPMVNENQIRPPIENGSAM 234
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTDAE+E+ LSQYGRVKEIKF+DERASGKSKGYC VEF+D ACK+ M
Sbjct: 235 LFVGELHWWTTDAEIESXLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGM 294
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 295 DGYVFNGRACVVAFASPQTLKQMGASYLSKSQXQAQAQQPGRRPMND 341
Score = 176 bits (447), Expect = 6e-41
Identities = 111/237 (46%), Positives = 126/237 (53%), Gaps = 11/237 (4%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
M+PQ MMG+ FDPT P FP VN + L GVAPHVNPAFF
Sbjct: 426 MNPQGMMGSGFDPTYMGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRG 485
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMW D SM WG G+EHGR TRESSYG DD AS+YGYG+
Sbjct: 486 MAANGMGMMGSSGMEGHHAGMWNDPSMGAWG---GEEHGRRTRESSYGGDDNASEYGYGD 542
Query: 646 TGHERGGRSN-ASREKDRGSERDWSSNS-------XXXXXXXXXXXXXXXXXXXXXXDGY 491
T +E+G RS+ ASRE++RGSERDWS NS D Y
Sbjct: 543 TNNEKGARSSAASRERERGSERDWSGNSERRHRDGREQDFERSERGEHREHRYKEEKDSY 602
Query: 490 RDHXXXXXXXXXXXXXXRGQSSSRPRSKSR--IMQEDDHRSRSRDADYGKRRRMPSE 326
R+H RGQSSSRPRS+SR + EDDHRSRSRD DY KRRR+PSE
Sbjct: 603 REHRQRDRDGVYEDDWDRGQSSSRPRSRSRSKAVPEDDHRSRSRDVDY-KRRRLPSE 658
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 346 bits (887), Expect = 6e-92
Identities = 190/347 (54%), Positives = 224/347 (64%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+DY ++EYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
+ EAP P GVGNG Q K+ D P +V + ++PGV V+ K +N G F
Sbjct: 61 --FQQPEAPPPSAGVGNGRLQVKKTDVPEQQVQAGVSQGSNVPGVSVEGKYTNAGTHFPA 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+ + + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 QNDVQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVD 175
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 1580
M + G + G + AN MG N+ MVNEN RP L++G TM
Sbjct: 176 PSNMPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACKD M
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
NGH FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMND 341
Score = 184 bits (466), Expect = 4e-43
Identities = 114/234 (48%), Positives = 125/234 (53%), Gaps = 8/234 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ+MMG FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 429 MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 487
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD+SM GW G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 488 MAANGMGMMGSSGMDGPHPGMWTDSSMGGWL---GEEHGRRTRESSYGGDDGASDYGYGE 544
Query: 646 TGHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYR 488
HE+G RS A SREKDRGSERDWS N+ YR
Sbjct: 545 ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 604
Query: 487 DHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
D RG SSSR RS+SR + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 605 DRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIPDEDHRSRSRDVDYGKRRRLPSE 658
>ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Prunus mume]
Length = 647
Score = 345 bits (886), Expect = 8e-92
Identities = 188/347 (54%), Positives = 231/347 (66%), Gaps = 4/347 (1%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDPM EEQ+DY D+EYGG QKLQ+QGSGAI ALADEE + EDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDPMAEEQIDYEDEEYGGAQKLQYQGSGAISALADEEPMVEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EAP+P GGVGNGG Q+++ D ++V + IPGV V K S+ F
Sbjct: 61 M--HRSEAPLPPGGVGNGGLQAQKTDVTETRVQAGVSQESKIPGVSVQGKYSSAVAQFP- 117
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+++ AK E G+ Y GAS QK ++M+ QV ++GF+GS MPP IG D
Sbjct: 118 --EQQDQPPVAKEPELGSTGYVGGASGSQKGRAMEMSHDTQVRHMGFQGSTTMPPNIGGD 175
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTM 1580
S + K G M N + AN+PM NEN RP +++G TM
Sbjct: 176 SSDITGKTALESVPSMNSGTAGPTGVTQMPTNQISIKVNANRPMFNENQVRPTVENGSTM 235
Query: 1579 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSM 1400
LFVGELHWWTTD+ELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D ACK+ M
Sbjct: 236 LFVGELHWWTTDSELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGM 295
Query: 1399 NGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
+G+ FNGRACVVAFASPQT++QMGASY++K+ RPMND
Sbjct: 296 DGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMND 342
Score = 176 bits (445), Expect = 1e-40
Identities = 107/234 (45%), Positives = 115/234 (49%), Gaps = 8/234 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
M+PQ MMGA FDPT SFPAVN + L GVAPHVNPAFF
Sbjct: 429 MNPQGMMGAGFDPTYMGRGGGYGGFPGPAFPGMLSSFPAVNTMGLAGVAPHVNPAFFGRG 488
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMW D SM GW G+EHGR TRESSYG DD AS+YGYGE
Sbjct: 489 MATNGMGMMGSSGMDGHHAGMWNDPSMGGWA---GEEHGRRTRESSYGGDDGASEYGYGE 545
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD-------GYR 488
HE+G SERDWS NS YR
Sbjct: 546 ANHEKG------------SERDWSGNSERRHRDEREQDWDRSERGEHREHRYKEEKDSYR 593
Query: 487 DHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
DH RGQSSSRPRS+S+ M EDDHRSRSRD DYGKRRR+PSE
Sbjct: 594 DHRQRERDVGYEDDWDRGQSSSRPRSRSKAMPEDDHRSRSRDVDYGKRRRLPSE 647
>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
gi|508708844|gb|EOY00741.1| RNA-binding family protein
isoform 6 [Theobroma cacao]
Length = 602
Score = 345 bits (885), Expect = 1e-91
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 1574
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 1573 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 1394
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 1393 HAFNGRACVVAFASPQTVRQMGASYMNKN 1307
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
Score = 144 bits (362), Expect = 5e-31
Identities = 79/147 (53%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 423 MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD SM GWG GDEHGR TRESSYG +D AS+YGYG+
Sbjct: 483 MAPNGMGMMGASGMDGPHAGMWTDASMGGWG---GDEHGRRTRESSYGGEDGASEYGYGD 539
Query: 646 TGHERGGRSNASREKDRGSERDWSSNS 566
HE+G S ASREK+R SER+WS NS
Sbjct: 540 ANHEKGRSSGASREKERVSEREWSGNS 566
>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
gi|508708843|gb|EOY00740.1| RNA-binding family protein
isoform 5, partial [Theobroma cacao]
Length = 656
Score = 345 bits (885), Expect = 1e-91
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 1574
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 1573 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 1394
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 1393 HAFNGRACVVAFASPQTVRQMGASYMNKN 1307
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
Score = 167 bits (422), Expect = 5e-38
Identities = 101/228 (44%), Positives = 114/228 (50%), Gaps = 7/228 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 423 MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD SM GWG GDEHGR TRESSYG +D AS+YGYG+
Sbjct: 483 MAPNGMGMMGASGMDGPHAGMWTDASMGGWG---GDEHGRRTRESSYGGEDGASEYGYGD 539
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRD 485
HE+G S ASREK+R SER+WS NS YR+
Sbjct: 540 ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599
Query: 484 HXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRR 341
H RGQSSSR R +S M E++HRSRSRD Y + +
Sbjct: 600 HRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVGYREEK 647
>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
gi|508708842|gb|EOY00739.1| RNA-binding family protein
isoform 4 [Theobroma cacao]
Length = 697
Score = 345 bits (885), Expect = 1e-91
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 1574
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 1573 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 1394
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 1393 HAFNGRACVVAFASPQTVRQMGASYMNKN 1307
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
Score = 160 bits (406), Expect = 4e-36
Identities = 109/278 (39%), Positives = 120/278 (43%), Gaps = 52/278 (18%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 423 MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD SM GWG GDEHGR TRESSYG +D AS+YGYG+
Sbjct: 483 MAPNGMGMMGASGMDGPHAGMWTDASMGGWG---GDEHGRRTRESSYGGEDGASEYGYGD 539
Query: 646 TGHERGGRSNASREKDRGSE---------------------------------------- 587
HE+G S ASREK+R SE
Sbjct: 540 ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599
Query: 586 -----RDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRDHXXXXXXXXXXXXXX 440
R+WS NS YR+H
Sbjct: 600 HRHREREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDSYREHRHRERDLDYDDDLD 659
Query: 439 RGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RGQSSSR R +S M E+ RSRSRD DYGKRRR+PSE
Sbjct: 660 RGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 697
>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695496|ref|XP_007044905.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|590695500|ref|XP_007044906.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708839|gb|EOY00736.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708841|gb|EOY00738.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 652
Score = 345 bits (885), Expect = 1e-91
Identities = 175/329 (53%), Positives = 226/329 (68%), Gaps = 2/329 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+D+GD+EYGGGQK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
R+EAP+ GG+G+ G ++++ + P +V + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPLQPGGLGSTGLKAQRNEAPEPRVEAGGSQGLNIPGVSVQGKHPNVSARYPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+++ + E +G+YP G+S QK + QV+N+GF+G K+G D
Sbjct: 119 KEEQ----PAVNRPEMVSGSYPSGSSISQKGSVTEGTHDKQVKNLGFQGLTSASNKVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 1574
+ K G + P + N MGT N P++NEN +P +++GPTMLF
Sbjct: 175 PSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLF 234
Query: 1573 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 1394
VGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEFYD CK+ MNG
Sbjct: 235 VGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNG 294
Query: 1393 HAFNGRACVVAFASPQTVRQMGASYMNKN 1307
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
Score = 185 bits (469), Expect = 2e-43
Identities = 109/233 (46%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 423 MHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 482
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD SM GWG GDEHGR TRESSYG +D AS+YGYG+
Sbjct: 483 MAPNGMGMMGASGMDGPHAGMWTDASMGGWG---GDEHGRRTRESSYGGEDGASEYGYGD 539
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRD 485
HE+G S ASREK+R SER+WS NS YR+
Sbjct: 540 ANHEKGRSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRYREEKDSYRE 599
Query: 484 HXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
H RGQSSSR R +S M E++HRSRSRD DYGK+RR+PSE
Sbjct: 600 HRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVDYGKKRRLPSE 652
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 345 bits (884), Expect = 1e-91
Identities = 190/344 (55%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M EEQ+DY +DEYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYNDVNVGDG +Q
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ--F 58
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
+ EAP P GVGNG Q K+ D P +V + +IPGV V+ K +N G F +
Sbjct: 59 QQPEAPPPSAGVGNGRLQVKKTDVPEQRVQVGGSQGSNIPGVSVEGKYTNAGSHFPAQND 118
Query: 1918 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 VQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSN 175
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTMLFV 1571
M + G + G + AN MG AN + MVNEN RP L++G TMLFV
Sbjct: 176 MPGRVANEPAPVLNPGAAGPQ-GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 1570 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 1391
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEF+D ACKD MNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 1390 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMND 338
Score = 183 bits (465), Expect = 5e-43
Identities = 114/234 (48%), Positives = 125/234 (53%), Gaps = 8/234 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ+MMG FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 426 MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 484
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD+SM GW G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 485 MAANGMGMMGSSGMDGPHPGMWTDSSMGGWL---GEEHGRRTRESSYGGDDGASDYGYGE 541
Query: 646 TGHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYR 488
HE+G RS A SREKDRGSERDWS N+ YR
Sbjct: 542 ANHEKGARSTAASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 601
Query: 487 DHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
D RGQSSSR RS+S + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 602 DRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLPSE 655
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 344 bits (883), Expect = 2e-91
Identities = 189/344 (54%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M EEQ+DY +DEYGG QK+Q+QG GAIPALADEEL+GEDDEYDDLYND+NVGDG +Q
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDINVGDGLLQ--F 58
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
+ EAP P GVGNG Q K+ D P +V + +IPGV V+ K +N G F +
Sbjct: 59 QQPEAPPPSAGVGNGRLQVKKTDVPEQRVQVGGSQGSNIPGVSVEGKYTNAGSDFPAQND 118
Query: 1918 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ + G+GNYPDGAS QK + V N+GF+GS P + G D
Sbjct: 119 VQV---AVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPSN 175
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAAN--QPMVNENAGRPILDSGPTMLFV 1571
M + G + G + AN MG AN + MVNEN RP L++G TMLFV
Sbjct: 176 MPGRAANEPAPVLNPGAAGPQ-GALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 1570 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 1391
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEF+D ACKD MNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 1390 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
FNGR CVVAFASPQT++QMGASYMNKN RPMND
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMND 338
Score = 184 bits (466), Expect = 4e-43
Identities = 114/234 (48%), Positives = 125/234 (53%), Gaps = 8/234 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ+MMG FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 426 MHPQNMMGG-FDPTYMGRGGGYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNRG 484
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTD+SM GW G+EHGR TRESSYG DD ASDYGYGE
Sbjct: 485 MAANGMGMMGSSGMDGPHPGMWTDSSMGGWV---GEEHGRRTRESSYGGDDGASDYGYGE 541
Query: 646 TGHERGGRSN-ASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYR 488
HE+G RS ASREKDRGSERDWS N+ YR
Sbjct: 542 ASHEKGARSTTASREKDRGSERDWSGNTDRRHREEREQDWDRSERDHRDHRHREEKDSYR 601
Query: 487 DHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
D RGQSSSR RS+S + ++DHRSRSRD DYGKRRR+PSE
Sbjct: 602 DRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIPDEDHRSRSRDVDYGKRRRLPSE 655
>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695488|ref|XP_007044903.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708837|gb|EOY00734.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 653
Score = 343 bits (881), Expect = 3e-91
Identities = 178/329 (54%), Positives = 224/329 (68%), Gaps = 2/329 (0%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MD M EEQ+D+GD+EYGG QK+Q+QGSGAIPALADEE++GEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDAMAEEQIDFGDEEYGGAQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
R+EAP GG+G+ G Q+++ + P + + +IPGV V K NV +
Sbjct: 61 LQ--RSEAPPQPGGMGSTGLQAQKNEAPEPRGEAGGSQGLNIPGVSVQGKHLNVTARYPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
D + + E G+G+YP G S QK ++ QV+N+GF+G + K+G D
Sbjct: 119 QDGQ----PAVSRPEMGSGSYPSGTSISQKGRVMEGTQDTQVKNMGFQGLSSASHKVGID 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLF 1574
+ K G + P + N MG N PM++EN RP +++GPTMLF
Sbjct: 175 PSGVPQKIANVPAQSLNSGTGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPTMLF 234
Query: 1573 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNG 1394
VGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ M+G
Sbjct: 235 VGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEGMDG 294
Query: 1393 HAFNGRACVVAFASPQTVRQMGASYMNKN 1307
+ FNGRACVVAFASPQT++QMGASYMNKN
Sbjct: 295 YMFNGRACVVAFASPQTLKQMGASYMNKN 323
Score = 182 bits (463), Expect = 9e-43
Identities = 109/233 (46%), Positives = 121/233 (51%), Gaps = 7/233 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 424 MHPQGMMGAGFDPTYMGRGGSYGGFPGPGFPGMLPSFPAVNTLGLAGVAPHVNPAFFGRG 483
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTDTSM GWG GDEHGR TRESSYG +D AS+YGYG+
Sbjct: 484 MAPNGMGMMGGPGMDGPHVGMWTDTSMGGWG---GDEHGRRTRESSYGGEDGASEYGYGD 540
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRD 485
HE+G S ASREK+R S+R+WS NS YR+
Sbjct: 541 ANHEKGRSSGASREKERVSDREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDSYRE 600
Query: 484 HXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
H RGQSSSR R +S M E+ RSRSRD DYGKRRR+PSE
Sbjct: 601 HRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 653
>ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Malus domestica]
Length = 656
Score = 343 bits (879), Expect = 5e-91
Identities = 187/351 (53%), Positives = 230/351 (65%), Gaps = 8/351 (2%)
Frame = -2
Query: 2287 MDPMGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQ 2108
MDP+GEEQ+DY D+EYGG KLQ+QGSGAI ALADEE + EDDE+DDLYNDVNVG+GFMQ
Sbjct: 1 MDPLGEEQIDYEDEEYGGAHKLQYQGSGAISALADEEPMVEDDEFDDLYNDVNVGEGFMQ 60
Query: 2107 SMHHRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSN 1928
HR+EA +P GGVGNGG Q+++ D P +V + IPGV V K S G F
Sbjct: 61 M--HRSEASLPTGGVGNGGLQAQKTDVPEPRVQAGVSQDLKIPGVSVQGKYSGAGAQFPE 118
Query: 1927 VDQKRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTD 1754
+Q AK E G+ +Y GAS QK ++M QV ++ F+GS MPP +G D
Sbjct: 119 QNQPPV----AKEPELGSTDYVSGASGSQKGRVMEMTHDPQVRHMAFQGSTTMPPNVGVD 174
Query: 1753 SGQMQVKFXXXXXXXXXXXXXGARNGPP----MLANPMGTA--ANQPMVNENAGRPILDS 1592
S + K A GPP +L N M AN+PMVNEN RP +++
Sbjct: 175 SSDITGK----GNSEFVPSLNPASAGPPGATQILTNQMSIKINANRPMVNENQIRPPIEN 230
Query: 1591 GPTMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXAC 1412
G LFVGELHWWTTDAE+E+V+SQYGRVKEIKF+DERASGKSKGYC VEF+D AC
Sbjct: 231 GSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGKSKGYCQVEFHDQAAATAC 290
Query: 1411 KDSMNGHAFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
K+ M+G+ FNGRACV A+ASPQT++QMGASY++K+ RPMND
Sbjct: 291 KEGMDGYVFNGRACVXAYASPQTLKQMGASYLSKSQGQAQAQQPGRRPMND 341
Score = 180 bits (457), Expect = 4e-42
Identities = 110/235 (46%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
M+PQ MMG+ FDPT P FP VN + L GVAPHVNPAFF
Sbjct: 426 MNPQGMMGSGFDPTYMGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRG 485
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
GH GMW D SM WG G+EHGR TRESSYG DD AS+YGYG+
Sbjct: 486 MATNGMGMMGSSGMEGHHAGMWNDPSMGTWG---GEEHGRRTRESSYGGDDNASEYGYGD 542
Query: 646 TGHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD-------GY 491
T +E+G RS+A SRE++RGSERDWS NS Y
Sbjct: 543 TNNEKGPRSSAASRERERGSERDWSGNSERRHRDDREQDYERSERGEQREHRYKEEKDSY 602
Query: 490 RDHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RDH RGQSSSRPRS+S+ + EDDHRSRSRD DY KRRR+PSE
Sbjct: 603 RDHRQRDRDGGYEDDWDRGQSSSRPRSRSKAVPEDDHRSRSRDVDY-KRRRLPSE 656
>ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
6-like [Jatropha curcas] gi|802723892|ref|XP_012085552.1|
PREDICTED: cleavage and polyadenylation specificity
factor subunit 6-like [Jatropha curcas]
gi|802723894|ref|XP_012085553.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit 6-like
[Jatropha curcas] gi|643714049|gb|KDP26714.1|
hypothetical protein JCGZ_17872 [Jatropha curcas]
Length = 656
Score = 326 bits (836), Expect = 5e-86
Identities = 181/344 (52%), Positives = 222/344 (64%), Gaps = 4/344 (1%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M +EQ+DY D+EYGG QK+Q+QGSGAIPALA+EE+ GEDDEYDDLYNDVNVG+ F+Q
Sbjct: 1 MADEQIDYEDEEYGGNQKMQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNVGENFLQM-- 57
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
H+++ P P VG+GGFQ++ ++ SKV + IP V V+ K S+ G F +
Sbjct: 58 HQSQVPPPPTSVGSGGFQTQNVN--ESKVETGGSQGLKIPEVAVEGKYSDPGTHFP---E 112
Query: 1918 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ KG E G+ Y DG+S QK ++M Q NIGF GS+ +P IG D
Sbjct: 113 PKDVPMGVKGPEMGSVAYSDGSSIAQKGRVMEMTHDAQARNIGFHGSSSVPSNIGVDPSD 172
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTA--ANQPMVNENAGRPILDSGPTMLFV 1571
M K G R P + N + N+P VNEN RP +++G T+LFV
Sbjct: 173 MSRKTANEPAPVPNTAATGPRGMPQLPGNQISINMDVNRPTVNENQIRPPVENGSTVLFV 232
Query: 1570 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGH 1391
GELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKG+C VEFYD ACK+ MNGH
Sbjct: 233 GELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGH 292
Query: 1390 AFNGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
FNGR CVVAFASPQT++QMGASYMNK RPMND
Sbjct: 293 VFNGRPCVVAFASPQTLKQMGASYMNKTQGQSQTQNQGRRPMND 336
Score = 174 bits (441), Expect = 3e-40
Identities = 107/238 (44%), Positives = 125/238 (52%), Gaps = 12/238 (5%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
M PQ+MMGA FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 422 MPPQNMMGAGFDPTYMGRGAAYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRG 481
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGRTRESSYGADDVASDYGYGET 644
G GMW+DTSM GWG G RTRESSYG DD AS+YGYGE
Sbjct: 482 MAPNGMGMMGPSGMDGPNAGMWSDTSMSGWGEEPGR---RTRESSYGGDDGASEYGYGEV 538
Query: 643 GHERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD---------- 497
+E+G RS+A SREK+R ERDWS NS +
Sbjct: 539 NNEKGARSSAASREKERVPERDWSGNSDRRHRDEREHEWDRSEREHREREHRDQRYREEK 598
Query: 496 -GYRDHXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
YR+H RGQSSS+ R++SR + E+D+RSRSRDADYGKRRR+P+E
Sbjct: 599 DSYREHRQRERDSGYEDDWDRGQSSSKSRTRSRAVPEEDYRSRSRDADYGKRRRLPAE 656
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein, putative
[Ricinus communis]
Length = 644
Score = 325 bits (834), Expect = 9e-86
Identities = 183/342 (53%), Positives = 215/342 (62%), Gaps = 2/342 (0%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M +EQ+DY D+EYGG QKLQ+QGSGAIPALA+EE+ GEDDEYDDLYNDVN+G+ F+Q
Sbjct: 1 MADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNIGENFLQM-- 57
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
HR+EAP VGNGGFQ + + +V + +IPGV V+SK S G F
Sbjct: 58 HRSEAPPAPPSVGNGGFQPRNSN--DLRVESGGSQGLNIPGVAVESKYST-GTHFPE--- 111
Query: 1918 KRTNFSSAKGVEGGAGNYPDGAS--QKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ KG E G+ YPDG+S QK ++M +Q N+GF+GS P IG D
Sbjct: 112 -----QNVKGPEIGSVGYPDGSSIAQKTRVMEMTNDSQARNMGFQGSTSGPSNIGVDPSD 166
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 1565
M K P M N+ NEN RP L++G TML+VGE
Sbjct: 167 MNNKISNDPTPVPNAGVPRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLYVGE 226
Query: 1564 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 1385
LHWWTTDAELENVLSQYG VKEIKF+DERASGKSKGYC VEFYD ACK+ MNGH F
Sbjct: 227 LHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNGHLF 286
Query: 1384 NGRACVVAFASPQTVRQMGASYMNKNXXXXXXXXXXXRPMND 1259
NGRACVVAFAS QT++QMGASYMNKN RPMND
Sbjct: 287 NGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMND 328
Score = 183 bits (465), Expect = 5e-43
Identities = 112/231 (48%), Positives = 123/231 (53%), Gaps = 7/231 (3%)
Frame = -2
Query: 997 PQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXXXX 818
PQSMM A FDPT PSFPAVNA+ L GVAPHVNPAFF
Sbjct: 417 PQSMMRAGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGRGMA 476
Query: 817 XXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGRTRESSYGADDVASDYGYGETGH 638
G GMW+DTSM GWG G RTRESSYG DD AS+YGYGE H
Sbjct: 477 PNGMGMMGPSGMDGPNAGMWSDTSMGGWGEEPGR---RTRESSYGGDDGASEYGYGEVNH 533
Query: 637 ERGGRSNA-SREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRDHX 479
E+G RS+A SREK+R SERDWS NS YRDH
Sbjct: 534 EKGARSSAASREKERASERDWSGNSDRRHRDDREHDWDRSEREHKEHRYREEKESYRDHR 593
Query: 478 XXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
RGQSSSR RS+SR + E+D+RSRSRDADYGKRRR+PSE
Sbjct: 594 QRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRSRSRDADYGKRRRLPSE 644
>ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 [Gossypium raimondii]
gi|823252908|ref|XP_012459071.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185
[Gossypium raimondii] gi|763811133|gb|KJB78035.1|
hypothetical protein B456_012G173800 [Gossypium
raimondii]
Length = 648
Score = 324 bits (831), Expect = 2e-85
Identities = 172/326 (52%), Positives = 212/326 (65%), Gaps = 2/326 (0%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M EEQ+D+GD+EYGG QK Q+QGSG IPALAD E+IGEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MAEEQIDFGDEEYGGVQKTQYQGSGTIPALADVEMIGEDDEYDDLYNDVNVGEGFLQLQ- 59
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
R+E P+ G G G Q+ + + P + + +I G+ V K NV + D
Sbjct: 60 -RSEPPVQ-PGTGGTGLQAHKNEAPEPRGEAGGSQGPNISGISVQGKYPNVSAGYREADV 117
Query: 1918 KRTNFSSAKGVEGGAGNYPDGA--SQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ T E G+GNYP G+ SQ ++ QV+N+GF+G K+GT
Sbjct: 118 QPT----VNRPEIGSGNYPSGSASSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSV 173
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 1565
+ K G + + N MG N PM+NEN RP +++GPTMLFVGE
Sbjct: 174 VPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGE 233
Query: 1564 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 1385
LHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ MNG+ F
Sbjct: 234 LHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMF 293
Query: 1384 NGRACVVAFASPQTVRQMGASYMNKN 1307
NGRACVVAFASPQT++QMGASYMNK+
Sbjct: 294 NGRACVVAFASPQTLKQMGASYMNKD 319
Score = 184 bits (467), Expect = 3e-43
Identities = 107/233 (45%), Positives = 123/233 (52%), Gaps = 7/233 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 419 MHPQGMMGAGFDPTYMGRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 478
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTDT+M GWG GDEH R TRESSYG +D AS+YGYG+
Sbjct: 479 MAPNGLGMMGVAGMDGPHSGMWTDTNMGGWG---GDEHDRRTRESSYGGEDGASEYGYGD 535
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRD 485
HE+G S A+REKDR SER+WS NS YR+
Sbjct: 536 ANHEKGRSSGATREKDRASEREWSGNSERRHHDEKERESDRPEREHREHRYREEKDSYRE 595
Query: 484 HXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
H RGQSSSR R++S +E++HRSRSRD DYGK+RR+PSE
Sbjct: 596 HRHRGRDVDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648
>gb|KHG22501.1| Cleavage and polyadenylation specificity factor subunit [Gossypium
arboreum]
Length = 648
Score = 323 bits (827), Expect = 6e-85
Identities = 171/326 (52%), Positives = 213/326 (65%), Gaps = 2/326 (0%)
Frame = -2
Query: 2278 MGEEQLDYGDDEYGGGQKLQFQGSGAIPALADEELIGEDDEYDDLYNDVNVGDGFMQSMH 2099
M EEQ+D+GD+EYGG QK Q+QGSG IPALAD E+IGEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MAEEQIDFGDEEYGGVQKTQYQGSGTIPALADVEMIGEDDEYDDLYNDVNVGEGFLQLQ- 59
Query: 2098 HRNEAPIPFGGVGNGGFQSKQIDGPSSKVPDNRATLESIPGVGVDSKASNVGGSFSNVDQ 1919
R+E P+ G G+ G Q+ + + P + + +I G+ V K NV + D
Sbjct: 60 -RSEPPVQ-PGTGSIGLQAHKNEAPEPRGEAGGSQGPNISGISVQGKYPNVSAGYREADV 117
Query: 1918 KRTNFSSAKGVEGGAGNYPDGA--SQKAPTLDMAPVNQVENIGFRGSAPMPPKIGTDSGQ 1745
+ + E G+GNYP G+ SQ ++ QV+N+GF+G K+GT
Sbjct: 118 Q----PAVNRPEIGSGNYPSGSASSQGGSVMETNFDTQVKNMGFQGLTSASSKVGTGPSV 173
Query: 1744 MQVKFXXXXXXXXXXXXXGARNGPPMLANPMGTAANQPMVNENAGRPILDSGPTMLFVGE 1565
+ K G + + N MG N PM+NEN RP +++GPTMLFVGE
Sbjct: 174 VPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGE 233
Query: 1564 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFYDXXXXXACKDSMNGHAF 1385
LHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFYD ACK+ MNG+ F
Sbjct: 234 LHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMF 293
Query: 1384 NGRACVVAFASPQTVRQMGASYMNKN 1307
NGRACVVAFASPQT++QMGASYMNK+
Sbjct: 294 NGRACVVAFASPQTLKQMGASYMNKD 319
Score = 184 bits (467), Expect = 3e-43
Identities = 107/233 (45%), Positives = 123/233 (52%), Gaps = 7/233 (3%)
Frame = -2
Query: 1003 MHPQSMMGAAFDPTXXXXXXXXXXXXXXXXXXXXPSFPAVNAVTLPGVAPHVNPAFFXXX 824
MHPQ MMGA FDPT PSFPAVN + L GVAPHVNPAFF
Sbjct: 419 MHPQGMMGAGFDPTYMGRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGRG 478
Query: 823 XXXXXXXXXXXXXXXGHQQGMWTDTSMVGWGASGGDEHGR-TRESSYGADDVASDYGYGE 647
G GMWTDT+M GWG GDEH R TRESSYG +D AS+YGYG+
Sbjct: 479 MAPNGLGMMGVAGMDGPHSGMWTDTNMGGWG---GDEHDRRTRESSYGGEDGASEYGYGD 535
Query: 646 TGHERGGRSNASREKDRGSERDWSSNSXXXXXXXXXXXXXXXXXXXXXXD------GYRD 485
HE+G S A+REKDR SER+WS NS YR+
Sbjct: 536 ANHEKGRSSGATREKDRASEREWSGNSERRHHDEKERESDRPEREHREHRYREEKDSYRE 595
Query: 484 HXXXXXXXXXXXXXXRGQSSSRPRSKSRIMQEDDHRSRSRDADYGKRRRMPSE 326
H RGQSSSR R++S +E++HRSRSRD DYGK+RR+PSE
Sbjct: 596 HRHRGRDLDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648