BLASTX nr result

ID: Cinnamomum23_contig00009232 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00009232
         (440 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010941649.1| PREDICTED: pentatricopeptide repeat-containi...    63   7e-08
ref|XP_010276204.1| PREDICTED: pentatricopeptide repeat-containi...    57   5e-06

>ref|XP_010941649.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130
           [Elaeis guineensis]
          Length = 601

 Score = 63.2 bits (152), Expect = 7e-08
 Identities = 33/72 (45%), Positives = 51/72 (70%)
 Frame = -2

Query: 217 SSPTIRTMVESALNHPFIESRCRTLLFGCENKLSGRAKHSHGTVEDGKCDRFFLDRRGML 38
           +SP+ R M+++AL H  ++ RC+ +  G EN L GR K+S+GT++  + +  FLD+RG  
Sbjct: 19  TSPS-RMMIKAALCHSIVKLRCKFI--GRENILRGRGKNSNGTIDKERHESVFLDKRGRW 75

Query: 37  RSFDAKRLSRKK 2
           R+FD K+LSRKK
Sbjct: 76  RTFDHKKLSRKK 87


>ref|XP_010276204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35130
           [Nelumbo nucifera] gi|720065214|ref|XP_010276206.1|
           PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130 [Nelumbo nucifera]
          Length = 584

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = -2

Query: 196 MVESALNHPFIESRCRTLLFGCENKLSGRAKHSH-GTVEDGKCDRFFLDRRGMLRSFDAK 20
           M+E   +HPF+E R R  LF C++     +K S    V+  K D  FLD+RG+ RS + K
Sbjct: 5   MIECTSSHPFLEPRSRLALFDCKSNFRWSSKKSQVQPVDKHKHDNLFLDKRGVWRSINPK 64

Query: 19  RLSRKK 2
           RLSRKK
Sbjct: 65  RLSRKK 70


Top