BLASTX nr result
ID: Cinnamomum23_contig00007493
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum23_contig00007493
(4403 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 2266 0.0
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 2255 0.0
ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2229 0.0
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2223 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2222 0.0
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 2221 0.0
ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II su... 2217 0.0
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 2217 0.0
ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Moru... 2216 0.0
ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II su... 2216 0.0
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su... 2215 0.0
ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II su... 2213 0.0
ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II su... 2212 0.0
ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II su... 2211 0.0
ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II su... 2208 0.0
gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicag... 2208 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2208 0.0
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su... 2206 0.0
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 2205 0.0
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr... 2205 0.0
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 2266 bits (5871), Expect = 0.0
Identities = 1128/1190 (94%), Positives = 1151/1190 (96%), Gaps = 4/1190 (0%)
Frame = -2
Query: 4177 MYGGEEYDPA--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 4004
MYGG+EYDP+ DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA
Sbjct: 1 MYGGDEYDPSMNDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA 60
Query: 4003 DIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 3824
DIEIRPESQHNPGRQSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS
Sbjct: 61 DIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYS 120
Query: 3823 APLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 3644
APLYVDVTKR+IKKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC
Sbjct: 121 APLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNSEKDLTELGEC 180
Query: 3643 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMF 3464
PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMF
Sbjct: 181 PYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMF 240
Query: 3463 VRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 3284
VRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM
Sbjct: 241 VRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMM 300
Query: 3283 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CE 3107
ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CE
Sbjct: 301 ELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCE 360
Query: 3106 TKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 2927
TKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY
Sbjct: 361 TKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAY 420
Query: 2926 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 2747
VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL
Sbjct: 421 VQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTL 480
Query: 2746 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAH 2567
SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+
Sbjct: 481 SHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 540
Query: 2566 PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTE 2387
PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTE
Sbjct: 541 PILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTE 600
Query: 2386 VGVIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAK 2210
VGVIRDIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ EE GWHDLVAK
Sbjct: 601 VGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAK 660
Query: 2209 GFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPD 2030
GFIEYVD +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPD
Sbjct: 661 GFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPD 720
Query: 2029 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 1850
HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG
Sbjct: 721 HNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAG 780
Query: 1849 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRE 1670
INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+RE
Sbjct: 781 INAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRE 840
Query: 1669 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSL 1490
NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD++ QGQ+SRYTRRDHSTSL
Sbjct: 841 NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDS-QGQSSRYTRRDHSTSL 899
Query: 1489 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1310
RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
Sbjct: 900 RHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 959
Query: 1309 TLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHR 1130
T+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+
Sbjct: 960 TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1019
Query: 1129 CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 950
CGYQMRGFETMYNGHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
Sbjct: 1020 CGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1079
Query: 949 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 770
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC
Sbjct: 1080 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFEC 1139
Query: 769 RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKP KDQKKKGA
Sbjct: 1140 RGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPSKDQKKKGA 1189
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 2255 bits (5843), Expect = 0.0
Identities = 1123/1194 (94%), Positives = 1149/1194 (96%), Gaps = 8/1194 (0%)
Frame = -2
Query: 4177 MYGGEEYDPA------DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 4016
MYG +EYDP D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV
Sbjct: 1 MYGEDEYDPTVVEEEEDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 60
Query: 4015 DESADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 3836
DESADIEIRPESQHNPGRQSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN
Sbjct: 61 DESADIEIRPESQHNPGRQSDFLETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRN 120
Query: 3835 LTYSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 3656
LTYSAPLYVDVTKRIIKKGHD EEVTETQ+FTKVFIGKVPIMLRSSYCT+YQNSEKDLTE
Sbjct: 121 LTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTE 180
Query: 3655 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPP 3476
LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPP
Sbjct: 181 LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPP 240
Query: 3475 SSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD 3296
SSMFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD
Sbjct: 241 SSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSD 300
Query: 3295 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG 3116
TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG
Sbjct: 301 TQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG 360
Query: 3115 D-CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 2939
+ CETKKAYYFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD
Sbjct: 361 EYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRD 420
Query: 2938 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 2759
VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY
Sbjct: 421 VRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY 480
Query: 2758 ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG 2579
ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG
Sbjct: 481 ASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVG 540
Query: 2578 SAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVD 2399
SAA+PILEFLEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNPD VD
Sbjct: 541 SAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVD 600
Query: 2398 VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHD 2222
VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK+DI+ALQ RE+ E+ GWHD
Sbjct: 601 VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHD 660
Query: 2221 LVAKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASII 2042
LV+KGFIEYVD +DL++ARLNP++AYSETYTHCEIHPSLILGVCASII
Sbjct: 661 LVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASII 720
Query: 2041 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 1862
PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ
Sbjct: 721 PFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQ 780
Query: 1861 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 1682
LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR
Sbjct: 781 LPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGR 840
Query: 1681 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDH 1502
PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD++ QGQ SRYTRRDH
Sbjct: 841 PNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS-QGQASRYTRRDH 899
Query: 1501 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 1322
STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
Sbjct: 900 STSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQE 959
Query: 1321 DMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1142
DMPWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
Sbjct: 960 DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK 1019
Query: 1141 ALHRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 962
ALH+CGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
Sbjct: 1020 ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ 1079
Query: 961 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 782
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
Sbjct: 1080 PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN 1139
Query: 781 SFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
SFECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKEVKP KDQKKKGA
Sbjct: 1140 SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEVKPPKDQKKKGA 1193
>ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Elaeis guineensis]
Length = 1187
Score = 2229 bits (5775), Expect = 0.0
Identities = 1101/1177 (93%), Positives = 1134/1177 (96%), Gaps = 1/1177 (0%)
Frame = -2
Query: 4147 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3968
+EDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNP
Sbjct: 12 EEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNP 71
Query: 3967 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3788
GRQSDF ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++I
Sbjct: 72 GRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI 131
Query: 3787 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3608
KKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 132 KKGHDCEEVTETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 191
Query: 3607 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3428
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+Q+RP S+MFVRMLSR SAKGG
Sbjct: 192 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGG 251
Query: 3427 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3248
SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 252 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 311
Query: 3247 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3071
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 312 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 371
Query: 3070 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2891
RLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVN
Sbjct: 372 RLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVN 431
Query: 2890 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2711
LQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 432 LQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 491
Query: 2710 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2531
EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TE
Sbjct: 492 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTE 551
Query: 2530 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLKEL 2351
NFEEISPAVIPQA+KIFVNG WVGIHRNPD +DVNTEVGV+RDIRLKEL
Sbjct: 552 NFEEISPAVIPQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKEL 611
Query: 2350 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYVDXXXXXX 2171
RLYTDYGRCSRPLFIVE +RLLIKKKDIQALQQRE+ EEGWHDLVAKGFIEY+D
Sbjct: 612 RLYTDYGRCSRPLFIVENQRLLIKKKDIQALQQRESPEEGWHDLVAKGFIEYIDTEEEET 671
Query: 2170 XXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 1991
+DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 672 TMIAMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 731
Query: 1990 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 1811
GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY
Sbjct: 732 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 791
Query: 1810 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 1631
NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL
Sbjct: 792 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 851
Query: 1630 DDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLL 1451
DDDGLAPPGTRVSGEDVIIGKT+PI QD++ QGQ SRYTRRDHSTS+RHSESGMVDQVLL
Sbjct: 852 DDDGLAPPGTRVSGEDVIIGKTSPIPQDDS-QGQASRYTRRDHSTSVRHSESGMVDQVLL 910
Query: 1450 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNP 1271
TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNP
Sbjct: 911 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 970
Query: 1270 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYN 1091
HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYN
Sbjct: 971 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1030
Query: 1090 GHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 911
GHTGR+L+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1031 GHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1090
Query: 910 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 731
RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1091 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 1150
Query: 730 IPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
IPYACKLLFQELM+MAIAPRM TKE+KP KDQKKKGA
Sbjct: 1151 IPYACKLLFQELMAMAIAPRMFTKEMKPAKDQKKKGA 1187
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2223 bits (5761), Expect = 0.0
Identities = 1103/1186 (93%), Positives = 1137/1186 (95%), Gaps = 4/1186 (0%)
Frame = -2
Query: 4165 EEYDPA--DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 3992
EEYDP DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI
Sbjct: 7 EEYDPTMEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 66
Query: 3991 RPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3812
RPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 67 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 126
Query: 3811 VDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 3632
VDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
Sbjct: 127 VDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 186
Query: 3631 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRML 3452
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRML
Sbjct: 187 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRML 246
Query: 3451 SRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR 3272
SR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLR
Sbjct: 247 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLR 306
Query: 3271 PSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKA 3095
PSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKA
Sbjct: 307 PSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKA 366
Query: 3094 YYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 2915
YYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKC
Sbjct: 367 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKC 426
Query: 2914 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 2735
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR
Sbjct: 427 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 486
Query: 2734 RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILE 2555
RLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILE
Sbjct: 487 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 546
Query: 2554 FLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVI 2375
FLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+
Sbjct: 547 FLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVV 606
Query: 2374 RDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIE 2198
RDIRLKELR+YTDYGRCSRPLFIVEK+RLLIK+KDIQALQQRET E+ GWHDLVAKGFIE
Sbjct: 607 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIE 666
Query: 2197 YVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 2018
Y+D +DLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 667 YIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 726
Query: 2017 PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1838
PRNTYQSAMGKQAMGIYVTNYQ RMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 727 PRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 786
Query: 1837 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMG 1658
VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMG
Sbjct: 787 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMG 846
Query: 1657 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSE 1478
MRHGSYDKLDDDGLAPPGTRVSGEDV+IGKTTPI QDE QG +RYTRRDHSTSLRHSE
Sbjct: 847 MRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEA-QGPAARYTRRDHSTSLRHSE 905
Query: 1477 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEG 1298
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEG 965
Query: 1297 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQ 1118
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQ
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1025
Query: 1117 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 938
MRGFETMYNGHTGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 937 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 758
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 757 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTK+VK KD+KKK A
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQAKDKKKKQA 1191
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2222 bits (5758), Expect = 0.0
Identities = 1103/1184 (93%), Positives = 1136/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4165 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3986
E+Y+ DEDE ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 13 EDYEDEDEDE-ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 71
Query: 3985 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3806
ESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 72 ESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 131
Query: 3805 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3626
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG
Sbjct: 132 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 191
Query: 3625 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3446
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 192 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR 251
Query: 3445 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3266
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS
Sbjct: 252 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 311
Query: 3265 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3089
LEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKAYY
Sbjct: 312 LEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYY 371
Query: 3088 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2909
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVD
Sbjct: 372 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD 431
Query: 2908 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2729
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 432 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 491
Query: 2728 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2549
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 492 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 551
Query: 2548 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2369
EEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+RD
Sbjct: 552 EEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRD 611
Query: 2368 IRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2192
IRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ EE GWHDLVAKGFIEY+
Sbjct: 612 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYI 671
Query: 2191 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2012
D DLV AR+NP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 672 DTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 731
Query: 2011 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1832
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 732 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 791
Query: 1831 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1652
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMR
Sbjct: 792 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMR 851
Query: 1651 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1472
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE+G
Sbjct: 852 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETG 910
Query: 1471 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1292
+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 911 IVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 970
Query: 1291 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1112
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 971 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1030
Query: 1111 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 932
GFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1031 GFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1090
Query: 931 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 752
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1091 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1150
Query: 751 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VKP KDQKKKGA
Sbjct: 1151 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA 1194
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 2221 bits (5754), Expect = 0.0
Identities = 1101/1187 (92%), Positives = 1136/1187 (95%), Gaps = 1/1187 (0%)
Frame = -2
Query: 4177 MYGGEEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3998
M GGE+ D +EDEEITQEDAWAVISAYF+EKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 1 MSGGEDDDYVNEDEEITQEDAWAVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDESADI 60
Query: 3997 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3818
EIRPESQHNPGRQ+DF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 61 EIRPESQHNPGRQADFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 120
Query: 3817 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3638
LYVDVTKR+IKKGHD EE+ E Q+ TKVFIGKVPIMLRSSYCTL+QNSEKDLTELGECPY
Sbjct: 121 LYVDVTKRVIKKGHDHEELAEQQELTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPY 180
Query: 3637 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3458
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QN+PPSSMFVR
Sbjct: 181 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVR 240
Query: 3457 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3278
MLSR S+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL
Sbjct: 241 MLSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 300
Query: 3277 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3101
LRPSLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 301 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETK 360
Query: 3100 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2921
KAYYFGYIIHRLL+CA+GRRPEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDVR+YVQ
Sbjct: 361 KAYYFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQ 420
Query: 2920 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2741
KCVDNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSH
Sbjct: 421 KCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSH 480
Query: 2740 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2561
LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 481 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPI 540
Query: 2560 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2381
LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVG
Sbjct: 541 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVG 600
Query: 2380 VIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFI 2201
VIRDIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK DI+ALQQRE+ +EGWHDLVAKGFI
Sbjct: 601 VIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFI 660
Query: 2200 EYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 2021
EYVD SDLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 661 EYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 720
Query: 2020 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1841
SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 721 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 780
Query: 1840 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 1661
IVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM
Sbjct: 781 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 840
Query: 1660 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHS 1481
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRYTRRDHSTSLRHS
Sbjct: 841 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPITQEE-MQGQASRYTRRDHSTSLRHS 899
Query: 1480 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLE 1301
ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 900 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 959
Query: 1300 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGY 1121
GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGY
Sbjct: 960 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1019
Query: 1120 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 941
QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1020 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1079
Query: 940 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 761
DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGC
Sbjct: 1080 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGC 1139
Query: 760 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
KNKTDI+QVHIPYACKLLFQELM+MAIAPRM TKE K KD KKKGA
Sbjct: 1140 KNKTDIIQVHIPYACKLLFQELMAMAIAPRMFTKEEKKPKDHKKKGA 1186
>ref|XP_012091599.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha
curcas]
Length = 1193
Score = 2217 bits (5744), Expect = 0.0
Identities = 1098/1178 (93%), Positives = 1131/1178 (96%), Gaps = 2/1178 (0%)
Frame = -2
Query: 4147 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3968
D +EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP
Sbjct: 17 DGEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 76
Query: 3967 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3788
G Q DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKR+I
Sbjct: 77 GHQPDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVI 136
Query: 3787 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3608
KKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 137 KKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 196
Query: 3607 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3428
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLSR SAKGG
Sbjct: 197 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGG 256
Query: 3427 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3248
SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 257 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 316
Query: 3247 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3071
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 317 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIH 376
Query: 3070 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2891
RLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLT+DVR+YVQKCVDNGKDVN
Sbjct: 377 RLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRSYVQKCVDNGKDVN 436
Query: 2890 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2711
LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 437 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 496
Query: 2710 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2531
EGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLEEW TE
Sbjct: 497 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 556
Query: 2530 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLKEL 2351
NFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV+RDIRLKEL
Sbjct: 557 NFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKEL 616
Query: 2350 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVDXXXXX 2174
R+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ EE GWHDLVAKGFIEY+D
Sbjct: 617 RIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEE 676
Query: 2173 XXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 1994
DLV AR+NP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA
Sbjct: 677 TTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 736
Query: 1993 MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 1814
MGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG
Sbjct: 737 MGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSG 796
Query: 1813 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDK 1634
YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRHGSYDK
Sbjct: 797 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDK 856
Query: 1633 LDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVL 1454
LDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE+G+VDQVL
Sbjct: 857 LDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSETGIVDQVL 915
Query: 1453 LTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVN 1274
LTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVN
Sbjct: 916 LTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVN 975
Query: 1273 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMY 1094
PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMY
Sbjct: 976 PHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1035
Query: 1093 NGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 914
NGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM
Sbjct: 1036 NGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1095
Query: 913 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 734
ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV
Sbjct: 1096 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQV 1155
Query: 733 HIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
HIPYACKLLFQELM+MAIAPRMLTK++KP+KD KKKGA
Sbjct: 1156 HIPYACKLLFQELMAMAIAPRMLTKDIKPVKDHKKKGA 1193
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 2217 bits (5744), Expect = 0.0
Identities = 1105/1192 (92%), Positives = 1136/1192 (95%), Gaps = 6/1192 (0%)
Frame = -2
Query: 4177 MYGGEEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 4010
M EYDP ++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMDDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4009 SADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3830
SADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3829 YSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3650
YSAPLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3649 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSS 3470
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+
Sbjct: 181 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 240
Query: 3469 MFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 3290
MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 300
Query: 3289 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD- 3113
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGD
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDF 360
Query: 3112 CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2933
CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2932 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2753
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2752 TLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2573
TLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2572 AHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVN 2393
A+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN 600
Query: 2392 TEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLV 2216
TEVGV+RDIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ E+ GWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLV 660
Query: 2215 AKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPF 2036
AKGFIEY+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPF 720
Query: 2035 PDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1856
PDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1855 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPN 1676
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+
Sbjct: 781 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1675 RENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHST 1496
R NTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRY+RRDHS
Sbjct: 841 RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEA-QGQASRYSRRDHSI 899
Query: 1495 SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1316
SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1315 PWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1136
PWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL 1019
Query: 1135 HRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 956
H+CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 955 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 776
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 775 ECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
ECRGCKNKTDIVQV+IPYACKLLFQELM+MAIAPRMLTKE P KDQKKKGA
Sbjct: 1140 ECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKE--PPKDQKKKGA 1189
>ref|XP_010108197.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
gi|587931023|gb|EXC18122.1| DNA-directed RNA polymerase
II subunit [Morus notabilis]
Length = 1193
Score = 2216 bits (5743), Expect = 0.0
Identities = 1097/1187 (92%), Positives = 1130/1187 (95%), Gaps = 2/1187 (0%)
Frame = -2
Query: 4174 YGGEEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 3995
Y + D D+DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE
Sbjct: 7 YDQQYNDDDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIE 66
Query: 3994 IRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 3815
IRPESQHNPG QSDF ETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL
Sbjct: 67 IRPESQHNPGHQSDFVETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPL 126
Query: 3814 YVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 3635
YVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD
Sbjct: 127 YVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYD 186
Query: 3634 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRM 3455
QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRM
Sbjct: 187 QGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRM 246
Query: 3454 LSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 3275
LSR S+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL
Sbjct: 247 LSRTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELL 306
Query: 3274 RPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKK 3098
RPSLEEAFVIQNQQVALDYIGKRG+TVGVT+EKRIKYAKEILQKEMLPHVG G+ CETKK
Sbjct: 307 RPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGTGEFCETKK 366
Query: 3097 AYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQK 2918
AYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQK
Sbjct: 367 AYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQK 426
Query: 2917 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 2738
CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
Sbjct: 427 CVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 486
Query: 2737 RRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPIL 2558
RRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PIL
Sbjct: 487 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 546
Query: 2557 EFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGV 2378
EFLEEW TENFEEISPAVIPQATKIFVNGCWVGIHR+PD VDVNTEVGV
Sbjct: 547 EFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGV 606
Query: 2377 IRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFI 2201
+RDIRLKELR+YTDYGRCSRPLFIVEK+RLLIKK+DI+ALQQRET EE GWHDLV+ GFI
Sbjct: 607 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIRALQQRETPEEAGWHDLVSNGFI 666
Query: 2200 EYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 2021
EY+D +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQ
Sbjct: 667 EYIDTEEEETTMISMTINDLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 726
Query: 2020 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 1841
SPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 786
Query: 1840 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTM 1661
IVAIACYSGYNQEDSVIMNQS+IDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTM
Sbjct: 787 IVAIACYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTM 846
Query: 1660 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHS 1481
GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE Q SRYTRRDHS SLRHS
Sbjct: 847 GMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAASRYTRRDHSISLRHS 906
Query: 1480 ESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLE 1301
E+G+VDQVLLTTNADGLRFVKVR+RS+RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+E
Sbjct: 907 ENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 966
Query: 1300 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGY 1121
GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGY
Sbjct: 967 GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGY 1026
Query: 1120 QMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 941
QMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR
Sbjct: 1027 QMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSR 1086
Query: 940 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 761
DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC
Sbjct: 1087 DGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGC 1146
Query: 760 KNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
KNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VKPL DQKKKGA
Sbjct: 1147 KNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPLNDQKKKGA 1193
>ref|XP_008801262.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Phoenix
dactylifera]
Length = 1187
Score = 2216 bits (5743), Expect = 0.0
Identities = 1094/1177 (92%), Positives = 1131/1177 (96%), Gaps = 1/1177 (0%)
Frame = -2
Query: 4147 DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 3968
++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESA+IEIRPESQHNP
Sbjct: 12 EDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESANIEIRPESQHNP 71
Query: 3967 GRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRII 3788
GRQSDF ETIYKISFGQIYLS+PMMTESDGETATLFPKAARLRNLTYSAPLYVDVTK++I
Sbjct: 72 GRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKVI 131
Query: 3787 KKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 3608
KKGHDCEEVTETQ+F KVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING
Sbjct: 132 KKGHDCEEVTETQEFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIING 191
Query: 3607 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRASAKGG 3428
SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+Q+RP S+MFVRMLSR SAKGG
Sbjct: 192 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLSRTSAKGG 251
Query: 3427 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 3248
SSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV
Sbjct: 252 SSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV 311
Query: 3247 IQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYFGYIIH 3071
IQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAYYFGYIIH
Sbjct: 312 IQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIH 371
Query: 3070 RLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN 2891
RLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCVDNGKDVN
Sbjct: 372 RLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVN 431
Query: 2890 LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 2711
LQFAIKAKTITSGLKYSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGR
Sbjct: 432 LQFAIKAKTITSGLKYSLATGNWGQANQAGARAGVSQVLNRLTYASTLSHLRRLNSPIGR 491
Query: 2710 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTE 2531
EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEW TE
Sbjct: 492 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWGTE 551
Query: 2530 NFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDIRLKEL 2351
NFEEISPAVIPQA+KIFVNG WVGIHRNPD +DVNTEVGV+RDIRLKEL
Sbjct: 552 NFEEISPAVIPQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVRDIRLKEL 611
Query: 2350 RLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYVDXXXXXX 2171
RLYTDYGRCSRPLFIVE +RLLIKK+ IQALQQRE+ EEGWHDLVAKGFIEY+D
Sbjct: 612 RLYTDYGRCSRPLFIVENQRLLIKKRHIQALQQRESPEEGWHDLVAKGFIEYIDTEEEET 671
Query: 2170 XXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 1991
+DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM
Sbjct: 672 TMIAMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 731
Query: 1990 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 1811
GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY
Sbjct: 732 GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGY 791
Query: 1810 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 1631
NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL
Sbjct: 792 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKL 851
Query: 1630 DDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGMVDQVLL 1451
DDDGLAPPGTRVSGEDVIIGKT+PI QD++ QGQ SRYTRRDHSTS+RHSESGMVDQVLL
Sbjct: 852 DDDGLAPPGTRVSGEDVIIGKTSPIPQDDS-QGQASRYTRRDHSTSVRHSESGMVDQVLL 910
Query: 1450 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNP 1271
TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITPDIIVNP
Sbjct: 911 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 970
Query: 1270 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRGFETMYN 1091
HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRGFETMYN
Sbjct: 971 HAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYN 1030
Query: 1090 GHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 911
GHTGR+L+AMIF+GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME
Sbjct: 1031 GHTGRKLTAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 1090
Query: 910 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 731
RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH
Sbjct: 1091 RDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVH 1150
Query: 730 IPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
IPYACKLLFQELM+MAIAPRM +KEVK KDQKK+GA
Sbjct: 1151 IPYACKLLFQELMAMAIAPRMFSKEVKAAKDQKKRGA 1187
>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
polymerase II subunit RPB2 [Gossypium arboreum]
gi|763801668|gb|KJB68623.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
gi|763801669|gb|KJB68624.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
Length = 1189
Score = 2215 bits (5739), Expect = 0.0
Identities = 1103/1192 (92%), Positives = 1135/1192 (95%), Gaps = 6/1192 (0%)
Frame = -2
Query: 4177 MYGGEEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 4010
M EYDP ++DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
Sbjct: 1 MEDDSEYDPQLMEDEDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE 60
Query: 4009 SADIEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 3830
SADIEIRPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT
Sbjct: 61 SADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLT 120
Query: 3829 YSAPLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 3650
YSAPLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
Sbjct: 121 YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG 180
Query: 3649 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSS 3470
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+
Sbjct: 181 ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST 240
Query: 3469 MFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 3290
MFVRMLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ
Sbjct: 241 MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQ 300
Query: 3289 MMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD- 3113
MMELLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+
Sbjct: 301 MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEF 360
Query: 3112 CETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 2933
CETKKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
Sbjct: 361 CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR 420
Query: 2932 AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 2753
+YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
Sbjct: 421 SYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS 480
Query: 2752 TLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSA 2573
TLSHLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSA
Sbjct: 481 TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA 540
Query: 2572 AHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVN 2393
A+PILEFLEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVN
Sbjct: 541 AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVN 600
Query: 2392 TEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLV 2216
TEVGV+RDIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRET E+ GWHDLV
Sbjct: 601 TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLV 660
Query: 2215 AKGFIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPF 2036
AKGFIEY+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPF
Sbjct: 661 AKGFIEYIDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPF 720
Query: 2035 PDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 1856
PDHNQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
Sbjct: 721 PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP 780
Query: 1855 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPN 1676
AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+
Sbjct: 781 AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD 840
Query: 1675 RENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHST 1496
R TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ SRY++RDHS
Sbjct: 841 RATTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEA-QGQASRYSKRDHSI 899
Query: 1495 SLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 1316
SLRHSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
Sbjct: 900 SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 1315 PWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1136
PWT+EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNIS+AL
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL 1019
Query: 1135 HRCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 956
H+CGYQMRGFETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 955 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 776
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 775 ECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
ECRGCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTKE P KDQKKKGA
Sbjct: 1140 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKE--PPKDQKKKGA 1189
>ref|XP_009605280.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana tomentosiformis]
Length = 1191
Score = 2213 bits (5735), Expect = 0.0
Identities = 1097/1184 (92%), Positives = 1135/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4165 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3986
++Y+ D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 9 QQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 68
Query: 3985 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3806
ESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 69 ESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 128
Query: 3805 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3626
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGG
Sbjct: 129 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGG 188
Query: 3625 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3446
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 189 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR 248
Query: 3445 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3266
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 249 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPS 308
Query: 3265 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3089
LEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+G+ CETKKAYY
Sbjct: 309 LEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYY 368
Query: 3088 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2909
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD
Sbjct: 369 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 428
Query: 2908 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2729
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 429 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 488
Query: 2728 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2549
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 548
Query: 2548 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2369
EEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+RD
Sbjct: 549 EEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRD 608
Query: 2368 IRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2192
IRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDIQ LQQRE+ EE GWHDLVAKG+IEY+
Sbjct: 609 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYI 668
Query: 2191 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2012
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 669 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 728
Query: 2011 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1832
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 729 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 788
Query: 1831 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1652
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMR
Sbjct: 789 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMR 848
Query: 1651 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1472
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRHSE+G
Sbjct: 849 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRHSETG 907
Query: 1471 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1292
MVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 908 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 967
Query: 1291 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1112
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 968 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1027
Query: 1111 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 932
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1028 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1087
Query: 931 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 752
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1088 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1147
Query: 751 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1148 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA 1191
>ref|XP_011027835.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus
euphratica]
Length = 1198
Score = 2212 bits (5732), Expect = 0.0
Identities = 1099/1186 (92%), Positives = 1133/1186 (95%), Gaps = 4/1186 (0%)
Frame = -2
Query: 4165 EEYDPADED--EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 3992
E+ +P DED EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI
Sbjct: 14 EDMEPEDEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEI 73
Query: 3991 RPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 3812
RPESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY
Sbjct: 74 RPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLY 133
Query: 3811 VDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 3632
VDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ
Sbjct: 134 VDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQ 193
Query: 3631 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRML 3452
GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPS+MFVRML
Sbjct: 194 GGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRML 253
Query: 3451 SRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLR 3272
SR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLR
Sbjct: 254 SRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLR 313
Query: 3271 PSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKA 3095
PSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKA
Sbjct: 314 PSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKA 373
Query: 3094 YYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKC 2915
YYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKC
Sbjct: 374 YYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKC 433
Query: 2914 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 2735
VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR
Sbjct: 434 VDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 493
Query: 2734 RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILE 2555
RLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILE
Sbjct: 494 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 553
Query: 2554 FLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVI 2375
FLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+
Sbjct: 554 FLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVV 613
Query: 2374 RDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIE 2198
RDIRLKELR+YTDYGRCSRPLFIVEK++LLI+KKDI ALQQRET +E GWHDLV+KGFIE
Sbjct: 614 RDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGFIE 673
Query: 2197 YVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 2018
Y+D DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQS
Sbjct: 674 YIDTEEEETTMISMTIHDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQS 733
Query: 2017 PRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 1838
PRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI
Sbjct: 734 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 793
Query: 1837 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMG 1658
VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMG
Sbjct: 794 VAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMG 853
Query: 1657 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSE 1478
MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI Q+E QGQ++RYTRRDHS SLRHSE
Sbjct: 854 MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEA-QGQSARYTRRDHSISLRHSE 912
Query: 1477 SGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEG 1298
+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EG
Sbjct: 913 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 972
Query: 1297 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQ 1118
ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQ
Sbjct: 973 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ 1032
Query: 1117 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 938
MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1033 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1092
Query: 937 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 758
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK
Sbjct: 1093 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1152
Query: 757 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
NKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK++K K QKKKGA
Sbjct: 1153 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKGA 1198
>ref|XP_009765275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1
[Nicotiana sylvestris]
Length = 1191
Score = 2211 bits (5730), Expect = 0.0
Identities = 1096/1184 (92%), Positives = 1135/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4165 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3986
++Y+ D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 9 QQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 68
Query: 3985 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3806
ESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 69 ESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 128
Query: 3805 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3626
VTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP DQGG
Sbjct: 129 VTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGG 188
Query: 3625 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3446
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 189 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR 248
Query: 3445 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3266
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 249 TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPS 308
Query: 3265 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3089
LEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVG+G+ CETKKAYY
Sbjct: 309 LEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYY 368
Query: 3088 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2909
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD
Sbjct: 369 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 428
Query: 2908 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2729
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 429 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 488
Query: 2728 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2549
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 548
Query: 2548 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2369
EEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVGV+RD
Sbjct: 549 EEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRD 608
Query: 2368 IRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2192
IRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDIQ LQQRE+ EE GWHDLVAKG+IEY+
Sbjct: 609 IRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYI 668
Query: 2191 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2012
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 669 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 728
Query: 2011 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1832
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 729 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 788
Query: 1831 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1652
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +TMGMR
Sbjct: 789 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMR 848
Query: 1651 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1472
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRHSE+G
Sbjct: 849 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRHSETG 907
Query: 1471 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1292
MVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 908 MVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 967
Query: 1291 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1112
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 968 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1027
Query: 1111 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 932
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1028 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1087
Query: 931 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 752
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKK+SFECRGCKNK
Sbjct: 1088 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNK 1147
Query: 751 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
TDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1148 TDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA 1191
>ref|XP_011096303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sesamum
indicum]
Length = 1193
Score = 2208 bits (5722), Expect = 0.0
Identities = 1095/1189 (92%), Positives = 1134/1189 (95%), Gaps = 4/1189 (0%)
Frame = -2
Query: 4174 YGGEEY--DPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESAD 4001
Y ++Y + DEDEEITQEDAW VISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE+AD
Sbjct: 6 YYDQDYNEEEEDEDEEITQEDAWPVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAAD 65
Query: 4000 IEIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSA 3821
IEIRPESQHNPG Q +FAETIYKISFGQIYLSKPMMTESDGETATLFP+AARLRNLTYSA
Sbjct: 66 IEIRPESQHNPGHQPEFAETIYKISFGQIYLSKPMMTESDGETATLFPRAARLRNLTYSA 125
Query: 3820 PLYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 3641
PLYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 126 PLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP 185
Query: 3640 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFV 3461
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E QNRPPS+MFV
Sbjct: 186 YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFV 245
Query: 3460 RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMME 3281
RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICY+FSDTQMME
Sbjct: 246 RMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYNFSDTQMME 305
Query: 3280 LLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CET 3104
LLRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CET
Sbjct: 306 LLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCET 365
Query: 3103 KKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYV 2924
KKAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YV
Sbjct: 366 KKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYV 425
Query: 2923 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 2744
QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS
Sbjct: 426 QKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 485
Query: 2743 HLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHP 2564
HLRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+P
Sbjct: 486 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 545
Query: 2563 ILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEV 2384
ILEFLEEW TENF+EISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEV
Sbjct: 546 ILEFLEEWGTENFKEISPAVIPQATKIFVNGCWVGIHRNPDMLVSTLRRLRRRVDVNTEV 605
Query: 2383 GVIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKG 2207
GV+RDIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ E+ GWHDLVAKG
Sbjct: 606 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKG 665
Query: 2206 FIEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDH 2027
FIEY+D DLVNARLNP +AYS+TYTHCEIHPSLILGVCASIIPFPDH
Sbjct: 666 FIEYIDTEEEETTMISMTIGDLVNARLNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDH 725
Query: 2026 NQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 1847
NQSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI
Sbjct: 726 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 785
Query: 1846 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNREN 1667
NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R N
Sbjct: 786 NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAN 845
Query: 1666 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLR 1487
TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI D+ QGQ +RYT+RDHSTSLR
Sbjct: 846 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISPDDA-QGQAARYTKRDHSTSLR 904
Query: 1486 HSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 1307
HSE+G+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT
Sbjct: 905 HSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT 964
Query: 1306 LEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRC 1127
LEGITPDIIVNPHAIPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALH+C
Sbjct: 965 LEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKC 1024
Query: 1126 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 947
GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR
Sbjct: 1025 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 1084
Query: 946 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECR 767
SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE+CGLIAIANLKKNSFECR
Sbjct: 1085 SRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECR 1144
Query: 766 GCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
GCKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK++K K+ KKKGA
Sbjct: 1145 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQSKELKKKGA 1193
>gb|AES59623.2| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1195
Score = 2208 bits (5722), Expect = 0.0
Identities = 1091/1184 (92%), Positives = 1136/1184 (95%), Gaps = 2/1184 (0%)
Frame = -2
Query: 4165 EEYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 3986
++ + D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP
Sbjct: 13 QQMEEEDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRP 72
Query: 3985 ESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 3806
ESQHNPG QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD
Sbjct: 73 ESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVD 132
Query: 3805 VTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 3626
V+KR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG
Sbjct: 133 VSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGG 192
Query: 3625 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSR 3446
YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 YFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSR 252
Query: 3445 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPS 3266
ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRPS
Sbjct: 253 ASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPS 312
Query: 3265 LEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYY 3089
LEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAK+ILQKEMLPHVGVG+ CETKKAYY
Sbjct: 313 LEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYY 372
Query: 3088 FGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVD 2909
FGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVD
Sbjct: 373 FGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD 432
Query: 2908 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 2729
NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL
Sbjct: 433 NGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL 492
Query: 2728 NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFL 2549
NSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFL
Sbjct: 493 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 552
Query: 2548 EEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRD 2369
EEW TENFEEISPAVIPQATKIFVNGCW+GIHR+PD VDVNTEVGV+RD
Sbjct: 553 EEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRD 612
Query: 2368 IRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYV 2192
IRLKELR+YTDYGRCSRPLFIV+K+RLLIKKKDI +LQQRE+ E+ GWHDLV+KGFIEY+
Sbjct: 613 IRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYI 672
Query: 2191 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 2012
D +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 673 DTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 732
Query: 2011 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 1832
NTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 733 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 792
Query: 1831 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMR 1652
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMR
Sbjct: 793 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMR 852
Query: 1651 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESG 1472
HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP+ Q+E QQGQ +RY++RDHS SLRHSE+G
Sbjct: 853 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEE-QQGQAARYSKRDHSISLRHSETG 911
Query: 1471 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGIT 1292
+VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGIT
Sbjct: 912 IVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 971
Query: 1291 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMR 1112
PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMR
Sbjct: 972 PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMR 1031
Query: 1111 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 932
GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG
Sbjct: 1032 GFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1091
Query: 931 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 752
LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK
Sbjct: 1092 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNK 1151
Query: 751 TDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
TDIVQV+IPYACKLLFQELM+MAIAPRMLTKEVK +KDQKKKGA
Sbjct: 1152 TDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKKGA 1195
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2208 bits (5721), Expect = 0.0
Identities = 1097/1188 (92%), Positives = 1133/1188 (95%), Gaps = 6/1188 (0%)
Frame = -2
Query: 4165 EEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3998
+EY+P D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3997 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3818
EIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3817 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3638
LYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPL 184
Query: 3637 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3458
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM + QNRPPS+MFVR
Sbjct: 185 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVR 244
Query: 3457 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3278
MLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMEL
Sbjct: 245 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMEL 304
Query: 3277 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3101
LRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 305 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETK 364
Query: 3100 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2921
KAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424
Query: 2920 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2741
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484
Query: 2740 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2561
LRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 485 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544
Query: 2560 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2381
LEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVG
Sbjct: 545 LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604
Query: 2380 VIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGF 2204
V+RDIRLKELR+YTDYGRCSRPLFIVEK+RL+IKKKDIQ LQQRE+ +E GWHDLVAKG+
Sbjct: 605 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664
Query: 2203 IEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHN 2024
IEY+D +DLV ARLNP DAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665 IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724
Query: 2023 QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1844
QSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784
Query: 1843 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT 1664
AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R +T
Sbjct: 785 AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRAST 844
Query: 1663 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRH 1484
MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRH
Sbjct: 845 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRH 903
Query: 1483 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL 1304
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1303 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCG 1124
EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CG
Sbjct: 964 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 1123 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 944
YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 943 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 764
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 763 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKKGA
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191
>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
sinensis]
Length = 1195
Score = 2206 bits (5717), Expect = 0.0
Identities = 1097/1184 (92%), Positives = 1130/1184 (95%), Gaps = 3/1184 (0%)
Frame = -2
Query: 4162 EYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 3983
+ + DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 13 QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
Query: 3982 SQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 3803
SQHNPG+QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73 SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
Query: 3802 TKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 3623
TKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
Query: 3622 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRA 3443
FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
Query: 3442 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSL 3263
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSL
Sbjct: 253 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
Query: 3262 EEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYF 3086
EEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG GD CETKKAYYF
Sbjct: 313 EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Query: 3085 GYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 2906
GYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN
Sbjct: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
Query: 2905 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 2726
GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
Query: 2725 SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLE 2546
SPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLE
Sbjct: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
Query: 2545 EWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDI 2366
EW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+ VDVNTEVGV+RDI
Sbjct: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
Query: 2365 RLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVD 2189
RLKELR+YTDYGRCSRPLFIVEK+RLLIKK+DI ALQQRE+ E+ GWHDLVAKGFIEY+D
Sbjct: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
Query: 2188 XXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2009
+DLV ARL+P++AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
Query: 2008 TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 1829
TYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI
Sbjct: 733 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
Query: 1828 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRH 1649
ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRH
Sbjct: 793 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
Query: 1648 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGM 1469
GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE QGQ SRYTRRDHS SLRHSE+GM
Sbjct: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGM 911
Query: 1468 VDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITP 1289
VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITP
Sbjct: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
Query: 1288 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 1109
DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRG
Sbjct: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
Query: 1108 FETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 929
FETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
Query: 928 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKT 749
RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKT
Sbjct: 1092 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
Query: 748 DIVQVHIPYACKLLFQELMSMAIAPRMLTKE-VKPLKDQKKKGA 620
DIVQVHIPYACKLLFQELM+MAIAPRMLTKE K KD KKKGA
Sbjct: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 2205 bits (5714), Expect = 0.0
Identities = 1096/1188 (92%), Positives = 1132/1188 (95%), Gaps = 6/1188 (0%)
Frame = -2
Query: 4165 EEYDPA----DEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 3998
+EY+P D++EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI
Sbjct: 5 DEYEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI 64
Query: 3997 EIRPESQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 3818
EIRPESQHNPG QSDFAETIYKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP
Sbjct: 65 EIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAP 124
Query: 3817 LYVDVTKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPY 3638
LYVDVTKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECP
Sbjct: 125 LYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPL 184
Query: 3637 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVR 3458
DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEVRSM E+QNRPPS+MFVR
Sbjct: 185 DQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVR 244
Query: 3457 MLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMEL 3278
MLSR SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMEL
Sbjct: 245 MLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMEL 304
Query: 3277 LRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETK 3101
LRPSLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETK
Sbjct: 305 LRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETK 364
Query: 3100 KAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQ 2921
KAYYFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQ
Sbjct: 365 KAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQ 424
Query: 2920 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 2741
KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH
Sbjct: 425 KCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSH 484
Query: 2740 LRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPI 2561
LRRLNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PI
Sbjct: 485 LRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPI 544
Query: 2560 LEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVG 2381
LEFLEEW TENFEEISPAVIPQATKIFVNG WVGIHR+PD VDVNTEVG
Sbjct: 545 LEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVG 604
Query: 2380 VIRDIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGF 2204
V+RDIRLKELR+YTDYGRCSRPLFIVEK+RL+IKKKDIQ LQQRE+ +E GWHDLVAKG+
Sbjct: 605 VVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGY 664
Query: 2203 IEYVDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHN 2024
IEY+D +DLV ARLNP DAYS+TYTHCEIHPSLILGVCASIIPFPDHN
Sbjct: 665 IEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHN 724
Query: 2023 QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 1844
QSPRNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN
Sbjct: 725 QSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 784
Query: 1843 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENT 1664
AIVAI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R T
Sbjct: 785 AIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRATT 844
Query: 1663 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRH 1484
MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QD+ QGQ SRYTR+DHSTSLRH
Sbjct: 845 MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDA-QGQASRYTRKDHSTSLRH 903
Query: 1483 SESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTL 1304
SE+GMVDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+
Sbjct: 904 SETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTV 963
Query: 1303 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCG 1124
EGI+PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CG
Sbjct: 964 EGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCG 1023
Query: 1123 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 944
YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS
Sbjct: 1024 YQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 1083
Query: 943 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 764
RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG
Sbjct: 1084 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRG 1143
Query: 763 CKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKEVKPLKDQKKKGA 620
CKNKTDIVQVHIPYACKLLFQELM+MAIAPRMLTK+VK KDQKKK A
Sbjct: 1144 CKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKAA 1191
>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
gi|557525528|gb|ESR36834.1| hypothetical protein
CICLE_v10027701mg [Citrus clementina]
gi|641824899|gb|KDO44201.1| hypothetical protein
CISIN_1g000996mg [Citrus sinensis]
Length = 1195
Score = 2205 bits (5714), Expect = 0.0
Identities = 1096/1184 (92%), Positives = 1130/1184 (95%), Gaps = 3/1184 (0%)
Frame = -2
Query: 4162 EYDPADEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 3983
+ + DE+EEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE
Sbjct: 13 QQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPE 72
Query: 3982 SQHNPGRQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 3803
SQHNPG+QSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV
Sbjct: 73 SQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV 132
Query: 3802 TKRIIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 3623
TKR+IKKGHD EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY
Sbjct: 133 TKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGY 192
Query: 3622 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLSRA 3443
FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLSR
Sbjct: 193 FIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRT 252
Query: 3442 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSL 3263
SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRPSL
Sbjct: 253 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQDTQMMELLRPSL 312
Query: 3262 EEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAYYF 3086
EEAFVIQNQQVALDYIGKRG+TVGVTR+KRIKYAKEILQKEMLPHVG GD CETKKAYYF
Sbjct: 313 EEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGTGDFCETKKAYYF 372
Query: 3085 GYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 2906
GYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN
Sbjct: 373 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 432
Query: 2905 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 2726
GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN
Sbjct: 433 GKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLN 492
Query: 2725 SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLE 2546
SPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEFLE
Sbjct: 493 SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552
Query: 2545 EWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIRDI 2366
EW TENFEEISPAVIPQATKIFVNGCWVGIHR+P+ VDVNTEVGV+RDI
Sbjct: 553 EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVDVNTEVGVVRDI 612
Query: 2365 RLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEYVD 2189
RLKELR+YTDYGRCSRPLFIVEK+RLLIKK+DI ALQQRE+ E+ GWHDLVAKGFIEY+D
Sbjct: 613 RLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWHDLVAKGFIEYID 672
Query: 2188 XXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 2009
+DLV ARL+P++AY++TYTHCEIHPSLILGVCASIIPFPDHNQSPRN
Sbjct: 673 TEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732
Query: 2008 TYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 1829
TYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI
Sbjct: 733 TYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI 792
Query: 1828 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRH 1649
ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP+R NTMGMRH
Sbjct: 793 ACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRH 852
Query: 1648 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIGQDETQQGQTSRYTRRDHSTSLRHSESGM 1469
GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI QDE QGQ SRYTRRDHS SLRHSE+GM
Sbjct: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEA-QGQASRYTRRDHSISLRHSETGM 911
Query: 1468 VDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITP 1289
VDQVLLTTNADGLRFVKVR+RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGITP
Sbjct: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971
Query: 1288 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHRCGYQMRG 1109
DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH+CGYQMRG
Sbjct: 972 DIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRG 1031
Query: 1108 FETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 929
FETMYNGHTGRRL+AMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL
Sbjct: 1032 FETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 1091
Query: 928 RFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKT 749
RFGEMERDCMIAHGA+HFLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKT
Sbjct: 1092 RFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCKNKT 1151
Query: 748 DIVQVHIPYACKLLFQELMSMAIAPRMLTKE-VKPLKDQKKKGA 620
DIVQVHIPYACKLLFQELM+MAIAPRMLTKE K KD KKKGA
Sbjct: 1152 DIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA 1195