BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00007392
         (3964 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polyme...  1556   0.0  
ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polyme...  1499   0.0  
ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polyme...  1492   0.0  
ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1489   0.0  
ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1489   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...  1484   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1483   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1480   0.0  
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1477   0.0  
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1476   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1475   0.0  
ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1474   0.0  
ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1472   0.0  
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme...  1470   0.0  
gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gos...  1468   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1466   0.0  
ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [G...  1464   0.0  
ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabi...  1436   0.0  
ref|XP_010917517.1| PREDICTED: probable RNA-dependent RNA polyme...  1436   0.0  
ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme...  1435   0.0  

>ref|XP_010275353.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962527|ref|XP_010275424.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962530|ref|XP_010275500.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962533|ref|XP_010275583.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962536|ref|XP_010275643.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
            gi|719962539|ref|XP_010275710.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nelumbo nucifera]
          Length = 1136

 Score = 1556 bits (4030), Expect = 0.0
 Identities = 780/1138 (68%), Positives = 922/1138 (81%), Gaps = 6/1138 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI + GFPA V+A+ VK  LE + G+ GTV ALKVR  KN G    AFVIVQFTTS  A
Sbjct: 3    KTIHLSGFPANVTAEAVKELLERYTGD-GTVYALKVRHHKNKGHARFAFVIVQFTTSGSA 61

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            + ITS   ++L YYG  YL V+D ERDI+ KPR +LL+LEHT LH GCQVS +KFS LW 
Sbjct: 62   DVITSLVNRRL-YYGTHYLKVRDVERDIVAKPRMSLLSLEHTTLHFGCQVSPEKFSVLWK 120

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
             ADV V F FGLR+L FFLS   ++YKL L YE+IWQIQLR PR ++KKFLLIQ+   PR
Sbjct: 121  GADVAVRFEFGLRRLHFFLSQFPIDYKLGLSYENIWQIQLRHPRGQNKKFLLIQMFGVPR 180

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            I+KK   S  N+F+ P LNYFR+  DDQW R  DFTPLCCIGQSS LCL++PY   LP+I
Sbjct: 181  IFKKVKISLENMFEDPILNYFREP-DDQWDRTTDFTPLCCIGQSSALCLELPYSYVLPNI 239

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RE F YYKE+EG F+LE G++F R L LVPIV P Q   +PY+ILFKV SLVQNG + GP
Sbjct: 240  REYFAYYKEDEGPFVLESGATFSRSLSLVPIVGPSQGSDIPYEILFKVCSLVQNGCLSGP 299

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
            TLD  FF LV+P  I  DYIE+ALE L +LKE C+EP  WL +QY  Y    R P+L +I
Sbjct: 300  TLDAAFFRLVDPNFISIDYIENALEKLYHLKECCYEPVNWLTKQYRAYCTLKRPPKLPSI 359

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLVY+ R+Q+TP K+YFCGPEV VSNRVLRE+S  I+NFIRISFVDE+ DK+ S D
Sbjct: 360  SLDDGLVYVRRIQITPCKVYFCGPEVIVSNRVLREYSRYIDNFIRISFVDEDLDKIHSTD 419

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            + PR   ++ + HT IY RILSTL+ GIVIG+KKF+FLAFSSSQLR+NSAWMFAS +  T
Sbjct: 420  ISPRTSFANEKGHTEIYDRILSTLKNGIVIGDKKFDFLAFSSSQLRDNSAWMFASSNGYT 479

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQ--KYNFS 2005
            AA IR+WMGDFS+I+NVAKYAARLGQSF SS+ETL V +HE + I DI+ E +  +Y FS
Sbjct: 480  AASIRQWMGDFSKIRNVAKYAARLGQSFSSSRETLNVYEHETEIIDDIKVEWRGIEYIFS 539

Query: 2004 DGIGKISANFARRVALKCDLS-STPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA+FA++VA KC    S PSAFQIRYGGYKGVVA+DP S  KLSLR+SM KY+S
Sbjct: 540  DGIGKISADFAKQVAKKCGFKGSFPSAFQIRYGGYKGVVAVDPTSTKKLSLRRSMSKYES 599

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
             N KLDVLSWSKYQPC+LNRQ+ITLLSTLGV+D+ FE+KQ+EA+DQLD +LTDS++AQEA
Sbjct: 600  RNTKLDVLSWSKYQPCFLNRQIITLLSTLGVRDSIFEKKQKEAMDQLDAILTDSLKAQEA 659

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGY+P+AEPFLSM LQTFRASKL ELRTKTRIF+P GRS++G
Sbjct: 660  LEIMSPGENTNILKEMLLCGYEPNAEPFLSMMLQTFRASKLLELRTKTRIFVPNGRSLLG 719

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLV-GKVFVAKNPCLHPG 1291
            CLDETRTL+YG+VFV +SS GR+QF +  L +F GN  ++   +V GK+ VAKNPCLHPG
Sbjct: 720  CLDETRTLKYGEVFVQVSSIGRRQFHESSLFVFSGNEPEQQKFIVEGKIIVAKNPCLHPG 779

Query: 1290 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1111
            DVR+LQAVNVPALHHMVDCV+FPQ+G+RPHPNECSGSDLDGD+YFV WDPDLIP RQ+ P
Sbjct: 780  DVRLLQAVNVPALHHMVDCVVFPQEGKRPHPNECSGSDLDGDVYFVCWDPDLIPPRQIQP 839

Query: 1110 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELA 931
            MEY+P  +  LDHDV IEE+EEYFTNY+VN+SLG+IANAHT FADKEP+ AESD C +LA
Sbjct: 840  MEYLPEPSVNLDHDVTIEEIEEYFTNYIVNESLGIIANAHTAFADKEPKKAESDACLQLA 899

Query: 930  KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 751
            KLFSIAVDFPKTGVPAEIP HL+VKE PDFMEK DKP Y S+RVIGKLFRA+KD+AP T 
Sbjct: 900  KLFSIAVDFPKTGVPAEIPQHLYVKEYPDFMEKLDKPTYVSERVIGKLFRAVKDIAPQTW 959

Query: 750  HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 571
             I+SFT+EVAR+SYDPDMEVDGFEDY+ DA ++K +YD KLGNLMDYYGIKTE E+LSG+
Sbjct: 960  SIRSFTQEVARRSYDPDMEVDGFEDYLSDAYYYKGEYDSKLGNLMDYYGIKTEAEILSGN 1019

Query: 570  ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 391
            I+K+SKSF+K+ DAEAISLAVRSL+KE R WFNEK S   P+  DD YAKASAWYHVTYH
Sbjct: 1020 IMKLSKSFTKKRDAEAISLAVRSLRKEARAWFNEK-SGPGPEA-DDVYAKASAWYHVTYH 1077

Query: 390  PDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKK--MRMKKVAEMASLQYSFGRSLRL 223
            PDYWG YNEG+KR HFLSFPW VYDKLIHIK++K  +R  ++ + +SL   F RSLRL
Sbjct: 1078 PDYWGCYNEGLKRDHFLSFPWCVYDKLIHIKREKASIRRIRIIDESSLGLQFRRSLRL 1135


>ref|XP_010917515.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X1 [Elaeis
            guineensis] gi|743774329|ref|XP_010917516.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 isoform X1
            [Elaeis guineensis]
          Length = 1129

 Score = 1499 bits (3880), Expect = 0.0
 Identities = 758/1136 (66%), Positives = 896/1136 (78%), Gaps = 3/1136 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+T  I GFP T +A  VK FLE H GE GT+ ALK R PK V  +SRA+ IVQFTT+R 
Sbjct: 3    SKTTNIHGFPTTATAPSVKAFLEVHTGE-GTIFALKFRLPKYVTAKSRAYAIVQFTTNRH 61

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
            AE I   A + L++Y    L V+D ERDI+PKPR++L  LE+  LH G  VS +KFS LW
Sbjct: 62   AESI---AHKHLVWYDGFVLKVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVLW 118

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
            +A DV+VNFGF LRK+ FFLS  G  YK EL YESIW+IQL     +  +FLLIQV AAP
Sbjct: 119  SAMDVKVNFGFNLRKIYFFLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAAP 178

Query: 3081 RIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2902
            +IY+    +   + + P  NYF+D  DDQW+R  DF+PLC IGQSS LCLQ+ Y   LP+
Sbjct: 179  KIYELFPRNSGLLLEDPIYNYFKDPPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPN 238

Query: 2901 IRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2722
            IR+ F++YKE+EG F LE G S+   LDLVPIVEP  RI +PYKILFK+N +VQNG + G
Sbjct: 239  IRDYFVFYKESEGHFDLERGISYSCSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFG 298

Query: 2721 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
            PTLD++FF LV+P  +  DYIE A+E +   K + F PA WL  +Y+K+  S R P+  +
Sbjct: 299  PTLDEKFFRLVSPQYVRIDYIECAIEEMYFSKSSFFNPANWLTEKYSKFKRSTRLPKSPS 358

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            ISLDSGLVY++RVQVTP+K+YF GPEVNVSNRVLR FS+DIENFIR+SFVDE+W+KM S 
Sbjct: 359  ISLDSGLVYVYRVQVTPSKVYFYGPEVNVSNRVLRHFSEDIENFIRVSFVDEDWEKMHST 418

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            DL  R+ S+  EKHT +Y+R LS LR GI IG K F+FLAFSSSQLRENS+WMFAS   L
Sbjct: 419  DLSSRSGSAGNEKHTALYRRTLSVLRNGITIGGKNFKFLAFSSSQLRENSSWMFASNGRL 478

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQKYNFSD 2002
            TAA IR+WMGDF EI+NVAKYAARLGQSF SS ETLTV KH++D IPD+     KY FSD
Sbjct: 479  TAAAIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVDKHDVDDIPDV--RDGKYVFSD 536

Query: 2001 GIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKSE 1825
            GIGKISA F+RRVA+KC L SSTPSAFQIRYGGYKGVVA+DP S  KLSLR+SM KYKS+
Sbjct: 537  GIGKISAEFSRRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMRKYKSD 596

Query: 1824 NMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEAL 1645
            N KLDVL++SKYQPC+LNRQLITLLSTLGV D  FE KQ+EAV++LD MLTD  RA EA+
Sbjct: 597  NTKLDVLAYSKYQPCFLNRQLITLLSTLGVGDWIFEMKQEEAVNELDKMLTDPDRAWEAI 656

Query: 1644 EMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMGC 1465
            E+MSPGE   VLKE+LLCGYKPD+EPF+SM LQTFRA++L EL+ K+RIFI KGR+MMGC
Sbjct: 657  ELMSPGETTSVLKELLLCGYKPDSEPFISMLLQTFRAARLLELKNKSRIFIQKGRAMMGC 716

Query: 1464 LDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLD-ESVVLVGKVFVAKNPCLHPGD 1288
            LDETRTLEYGQVFV +S  GR QF ++GL M+ G+  D  + VL GKV +AKNPCLHPGD
Sbjct: 717  LDETRTLEYGQVFVQVSCTGRMQFHNNGLFMYGGSESDHHTAVLKGKVVIAKNPCLHPGD 776

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            +RVL AV+VP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFVSWD DLIP R V PM
Sbjct: 777  IRVLSAVDVPELHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDADLIPPRVVTPM 836

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y  A +EILDHDV IEEV EYFTNY+VNDSLG+IANAHTVFADK+P  AES+ CTELA+
Sbjct: 837  DYTSAPSEILDHDVTIEEVMEYFTNYIVNDSLGIIANAHTVFADKKPLKAESEECTELAR 896

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP+HLHVKE PDFMEK DK  YESK VIGKL+RAIKD   T G 
Sbjct: 897  LFSIAVDFPKTGVPAEIPTHLHVKEYPDFMEKLDKVTYESKGVIGKLYRAIKD--HTWGQ 954

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I++FT+E+ARKSYDPDMEVDGFE+Y+++A  FK +YD KLGNL+++YGIKTE E+LSGSI
Sbjct: 955  IKAFTKEMARKSYDPDMEVDGFEEYLDEAFLFKGEYDFKLGNLLEHYGIKTEAEILSGSI 1014

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMSK+F+K  D EAI LAVRSL+KE R WFNEK  + D + +DD YAKASAWYHVTYHP
Sbjct: 1015 MKMSKNFTKYKDGEAIGLAVRSLRKEARAWFNEK--RIDCEDEDDVYAKASAWYHVTYHP 1072

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAE-MASLQYSFGRSLRL 223
            DYWG YNEG+ R HFLSFPW VYDKL  IK+K M M+K    + SLQ+    SLR+
Sbjct: 1073 DYWGCYNEGLNRPHFLSFPWCVYDKLTIIKKKTMSMRKAKTILFSLQHKMETSLRM 1128


>ref|XP_008812977.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Phoenix
            dactylifera] gi|672186025|ref|XP_008812978.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Phoenix
            dactylifera]
          Length = 1131

 Score = 1492 bits (3862), Expect = 0.0
 Identities = 749/1136 (65%), Positives = 899/1136 (79%), Gaps = 3/1136 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+TI I GFP T +A  VK FLE H G+ GT+ ALK R PK V  +SRA+ IVQF  ++ 
Sbjct: 3    SKTINIHGFPTTATAPSVKEFLEVHTGK-GTIYALKFRLPKYVTAKSRAYAIVQFIANKH 61

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
            AE I  K   +L++     L V+  ERDI+PKPR++L  LE+T +H G  VS +KFS LW
Sbjct: 62   AESIACK---RLVWVDGFVLKVRHMERDIVPKPRTSLFVLENTTVHFGSPVSQNKFSVLW 118

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
            +  DV VNFGF +RK+ FFL      YK EL YESIW+IQL     +  +FLLIQV AAP
Sbjct: 119  SPKDVRVNFGFSMRKIYFFLVQGSHSYKFELAYESIWEIQLHHSSTKYLQFLLIQVVAAP 178

Query: 3081 RIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2902
            ++Y+ +  +   + + P  NYF+D  DDQW+R  DF+PLC IGQSS LCLQ+ Y   LP+
Sbjct: 179  KVYELSLRNSGLLHEDPEYNYFKDLPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPN 238

Query: 2901 IRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2722
            IR+ F +YKE EG+F LE GSS+ R LDLVPIVEP  RI +PYKILFK+N +VQNG + G
Sbjct: 239  IRDYFPFYKEFEGRFDLERGSSYSRSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFG 298

Query: 2721 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
            PTLD +FF LV+P  I  DYIE A+E + + K + F+PA WL ++Y K   SLR P+  +
Sbjct: 299  PTLDGKFFGLVSPQFIRIDYIECAIEEMYHSKSSFFDPANWLTKKYLKLKRSLRLPKSPS 358

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            ISLD+GLVY++RVQVTP+K+YF GPEVNVSNRV+R FS+DIENF+R+SFVDE+W+KM S 
Sbjct: 359  ISLDAGLVYVYRVQVTPSKVYFYGPEVNVSNRVVRHFSEDIENFVRVSFVDEDWEKMHST 418

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            DL  R+ S+  E HT +Y+RILS LR GI IG+KKFEFLAFSSSQLRENSAWMFAS   L
Sbjct: 419  DLSSRSGSAGNEMHTALYRRILSVLRNGITIGDKKFEFLAFSSSQLRENSAWMFASNERL 478

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQKYNFSD 2002
            TAA IR+WMGDF EI+NVAKYAARLGQSF SS ETLTV KH++D IPD+     KY FSD
Sbjct: 479  TAAAIRKWMGDFHEIRNVAKYAARLGQSFSSSTETLTVDKHDVDDIPDV--RYGKYVFSD 536

Query: 2001 GIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKSE 1825
            GIGKISA FA+RVA+KC L SSTPSAFQIRYGGYKGVVA+DP S  KLSLR+SM KYKS+
Sbjct: 537  GIGKISAEFAKRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMRKYKSD 596

Query: 1824 NMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEAL 1645
            N KLDVL++SK+QPC+LNRQLITLLSTLGV+D  FE KQ+EAV+QLD +LTD +RAQEA+
Sbjct: 597  NTKLDVLAYSKHQPCFLNRQLITLLSTLGVRDWIFEMKQEEAVNQLDKILTDPVRAQEAI 656

Query: 1644 EMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMGC 1465
            E+M  GE   VLKE+LLCGYKPD+EPFLSM LQTFRAS+L EL+TK+RIFIPKGR+MMGC
Sbjct: 657  ELMPSGETTSVLKELLLCGYKPDSEPFLSMVLQTFRASRLLELKTKSRIFIPKGRAMMGC 716

Query: 1464 LDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLD-ESVVLVGKVFVAKNPCLHPGD 1288
            LDET+ LEYG+VFV +S  GR QF ++GL ++ G+  D  + VL GKV VAKNPCLHPGD
Sbjct: 717  LDETKILEYGEVFVQVSCTGRMQFHNNGLFVYGGSESDHHTAVLKGKVVVAKNPCLHPGD 776

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            +RVL AV+VP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFVSWD DLIP R+V PM
Sbjct: 777  IRVLSAVDVPDLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSWDADLIPPREVTPM 836

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y  A +EILDHDV IEEV EYFT+Y+VNDSLG+IANAHTVFADKEPR AES+ C ELA+
Sbjct: 837  DYTSAPSEILDHDVTIEEVMEYFTDYIVNDSLGIIANAHTVFADKEPRKAESESCIELAR 896

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP+HLHVKE PDFMEK DK  YESK VIGKLFRAIKD     G 
Sbjct: 897  LFSIAVDFPKTGVPAEIPTHLHVKEYPDFMEKLDKVTYESKGVIGKLFRAIKDHTSHLGQ 956

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I++FT+E+A KSYDPDMEVDGF++Y+++A WFK +YD KLGNL+++YGIKTE E+LSGSI
Sbjct: 957  IKAFTKEMAMKSYDPDMEVDGFKEYLDEAFWFKGEYDFKLGNLLEHYGIKTEAEILSGSI 1016

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMSK+F+K  D EAI LA+RSL+KE R WF+EK  + D + +DD YAKASAWYHVTYHP
Sbjct: 1017 MKMSKTFTKYKDGEAIGLALRSLRKEARAWFDEK--RIDCEDEDDVYAKASAWYHVTYHP 1074

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKV-AEMASLQYSFGRSLRL 223
            DYWG YNEG+ R HFLSFPW VYDKL  IK+KK+ M+K   E+ SL +   RSLR+
Sbjct: 1075 DYWGCYNEGLNRPHFLSFPWCVYDKLTLIKKKKISMRKYETELFSLHHQVKRSLRM 1130


>ref|XP_012072321.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596568|ref|XP_012072322.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596570|ref|XP_012072324.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas]
          Length = 1127

 Score = 1489 bits (3855), Expect = 0.0
 Identities = 738/1134 (65%), Positives = 888/1134 (78%), Gaps = 3/1134 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GFP+ V+ D+VK FLE+H GE GTV A+K+R  KN G R   + IVQF T+R A
Sbjct: 3    KTIQVYGFPSHVTVDEVKKFLESHSGE-GTVFAMKIRETKNRGRRK--YAIVQFQTARDA 59

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I S   ++L Y G +YL  +  + DI+PKPR+ L +++H  LH GCQ+S +KFS LW 
Sbjct: 60   ELIISLTNKRLRY-GTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWT 118

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
              +V VNFGFG+RKL FFLSH  + YKLEL YE++WQ++L CPR RS K+LLIQ+  APR
Sbjct: 119  GTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPR 178

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            I++K   ++N +F+ P  N  +DT D+QW+R +DFTP C IG SS LCL+ P    +P  
Sbjct: 179  IFEKEIATFN-VFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            +ENF YYKE+EG F+LE G++F R LDLVPIV P   + LP++ILF+VN LVQNG + G 
Sbjct: 238  QENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGS 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LD  F+ LV+P +++ D IEHAL+ L +LKE C++P+RWL  QY KY  S   PR  +I
Sbjct: 298  ALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SL SGLVY+ RVQ+TP K+YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE +K+ S D
Sbjct: 358  SLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTD 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            L PRA S +G++ T IYKRILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR  LT
Sbjct: 418  LCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 477

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETES--QKYNFS 2005
            AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V ++EI+ +PD+E E    KY FS
Sbjct: 478  AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTKYLFS 537

Query: 2004 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FARRVALKC      PSAFQIRYGGYKGVVA+DP S  KLSLR+SMCKY+S
Sbjct: 538  DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYES 597

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV D+ FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 598  ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQEA 657

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            L++MSPGE   +L EMLLCGY+PDAEPFLSM LQ FRASKL +LRTK+RIF+P GRSMMG
Sbjct: 658  LDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMMG 717

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETR LEYGQVFV  S +  KQ +D    M  G       V+ G V VAKNPCLHPGD
Sbjct: 718  CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MVGGIGSGNGFVIEGMVIVAKNPCLHPGD 776

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            +RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP +Q+PPM
Sbjct: 777  IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQLPPM 836

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y P  +  LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP  A S  C ELA 
Sbjct: 837  DYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLELAS 896

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
             FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T  
Sbjct: 897  KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 956

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+SFT EVAR+ YDPDMEVDGFEDYI+DA ++K  YD KLGN MDYYGI+TE E+L GSI
Sbjct: 957  IKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILGGSI 1016

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMSK+F+K+ DAEAI LAVRSL+KE R WF E+GS  D + +DD YAKASAW++VTYHP
Sbjct: 1017 MKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSE-EDDVYAKASAWHYVTYHP 1075

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLR 226
             YWG YNEGM R HFLSFPW VYDKLI IK+K    ++   ++SL+  FG  LR
Sbjct: 1076 SYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRK----RRCQHLSSLERQFGLRLR 1125


>ref|XP_012072320.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
            curcas]
          Length = 1144

 Score = 1489 bits (3855), Expect = 0.0
 Identities = 738/1134 (65%), Positives = 888/1134 (78%), Gaps = 3/1134 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GFP+ V+ D+VK FLE+H GE GTV A+K+R  KN G R   + IVQF T+R A
Sbjct: 20   KTIQVYGFPSHVTVDEVKKFLESHSGE-GTVFAMKIRETKNRGRRK--YAIVQFQTARDA 76

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I S   ++L Y G +YL  +  + DI+PKPR+ L +++H  LH GCQ+S +KFS LW 
Sbjct: 77   ELIISLTNKRLRY-GTSYLKARPLDNDIVPKPRTFLHSMDHITLHFGCQISKEKFSVLWT 135

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
              +V VNFGFG+RKL FFLSH  + YKLEL YE++WQ++L CPR RS K+LLIQ+  APR
Sbjct: 136  GTNVSVNFGFGMRKLQFFLSHGQMGYKLELSYENVWQMELHCPRGRSVKYLLIQLYGAPR 195

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            I++K   ++N +F+ P  N  +DT D+QW+R +DFTP C IG SS LCL+ P    +P  
Sbjct: 196  IFEKEIATFN-VFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 254

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            +ENF YYKE+EG F+LE G++F R LDLVPIV P   + LP++ILF+VN LVQNG + G 
Sbjct: 255  QENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFEILFRVNLLVQNGCLPGS 314

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LD  F+ LV+P +++ D IEHAL+ L +LKE C++P+RWL  QY KY  S   PR  +I
Sbjct: 315  ALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYDPSRWLDEQYRKYLKSKCHPRSPSI 374

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SL SGLVY+ RVQ+TP K+YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE +K+ S D
Sbjct: 375  SLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNFLRVSFVDEELEKIYSTD 434

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            L PRA S +G++ T IYKRILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR  LT
Sbjct: 435  LCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 494

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETES--QKYNFS 2005
            AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V ++EI+ +PD+E E    KY FS
Sbjct: 495  AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVSRNEIEILPDVEVERGRTKYLFS 554

Query: 2004 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FARRVALKC      PSAFQIRYGGYKGVVA+DP S  KLSLR+SMCKY+S
Sbjct: 555  DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMCKYES 614

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV D+ FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 615  ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVADHIFEKKQREAVDQLDAILTNSLRAQEA 674

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            L++MSPGE   +L EMLLCGY+PDAEPFLSM LQ FRASKL +LRTK+RIF+P GRSMMG
Sbjct: 675  LDLMSPGETTNILNEMLLCGYQPDAEPFLSMMLQMFRASKLLDLRTKSRIFVPNGRSMMG 734

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETR LEYGQVFV  S +  KQ +D    M  G       V+ G V VAKNPCLHPGD
Sbjct: 735  CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MVGGIGSGNGFVIEGMVIVAKNPCLHPGD 793

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            +RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP +Q+PPM
Sbjct: 794  IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRQQLPPM 853

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y P  +  LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP  A S  C ELA 
Sbjct: 854  DYTPQPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPEKAMSKPCLELAS 913

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
             FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T  
Sbjct: 914  KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 973

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+SFT EVAR+ YDPDMEVDGFEDYI+DA ++K  YD KLGN MDYYGI+TE E+L GSI
Sbjct: 974  IKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRTEAEILGGSI 1033

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMSK+F+K+ DAEAI LAVRSL+KE R WF E+GS  D + +DD YAKASAW++VTYHP
Sbjct: 1034 MKMSKAFTKKRDAEAIGLAVRSLRKEARSWFKERGSGLDSE-EDDVYAKASAWHYVTYHP 1092

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLR 226
             YWG YNEGM R HFLSFPW VYDKLI IK+K    ++   ++SL+  FG  LR
Sbjct: 1093 SYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRK----RRCQHLSSLERQFGLRLR 1142


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score = 1484 bits (3842), Expect = 0.0
 Identities = 745/1135 (65%), Positives = 883/1135 (77%), Gaps = 3/1135 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++  FP+ V A++VK FLE + G+E TV ALK+R  KN G   RA+ IVQFT S  A
Sbjct: 3    KTIQVSRFPSNVHAEEVKTFLELYTGKE-TVYALKIRQQKNGG---RAYAIVQFTKSTDA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I     Q+L YYG +YL  ++ E DI+PKPR+ L  +E   LH GCQVS++KF  LW 
Sbjct: 59   ELIIRLTNQRL-YYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
              DV VNFG G+RKL F LSH  +EY+L+LFYE+IWQI+L  PR ++ K+LLIQ+  APR
Sbjct: 118  EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IY+K   S   +F++P LNYF D  DDQW+R  DFT   CIGQSS LCL++PY+ +LP+ 
Sbjct: 178  IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF YYKE+EG+F+LE GSS+ R L+LVPIV P   I LPY+ILFK+N LVQNG I GP
Sbjct: 238  RENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGP 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LD  F+ LVNPC ID  YI+HALE L  LKE CFEP++WL  QY  Y  S + P    I
Sbjct: 298  ALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLV + RVQ+TP+++YFCGPE+NVSNRVLR F DDI+NF+RI+FVDEE +K+ S D
Sbjct: 358  SLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTD 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            L+ R R ++      IY RILSTL+ GIVIG+K+FEFLAFSSSQLRENSAWMFASR  LT
Sbjct: 418  LLTRNRITE------IYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLT 471

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQ--KYNFS 2005
            AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI+ I D+E +     Y FS
Sbjct: 472  AADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFS 531

Query: 2004 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FA++VA KC L+  TPSAFQIR GG+KGVVA+DP S  KLSLR SM KY+S
Sbjct: 532  DGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYES 591

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D+AFE KQ+E VDQL+ +LTD ++AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEA 651

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTK+RIF+  GRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMG 711

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETRTL+YGQVFV +S                G+R ++  ++ GKV VAKNPCLHPGD
Sbjct: 712  CLDETRTLDYGQVFVQVS----------------GSRSEQRFIVQGKVVVAKNPCLHPGD 755

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIPS+Q+PPM
Sbjct: 756  VRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPM 815

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA  + L+H+V IEEVEEYFTNY+VNDSLG+IANAHTVFAD+EPR A S  C  LAK
Sbjct: 816  DYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAK 875

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP  L VKE PDFMEKPDKP Y+S  VIGKLFR +KD+AP    
Sbjct: 876  LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECF 935

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+S TRE   + YDPDMEVDG+EDY++DA + K  YD KLGNLM+YYGIKTE E+LSG I
Sbjct: 936  IRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGI 995

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMS+SF+K+ DAEAI +AVRSL+KE R WFNEKG+  D +  DD YAKASAWYHVTYHP
Sbjct: 996  MKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEA-DDLYAKASAWYHVTYHP 1054

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             YWG YNEGM R HFLSFPW VYDKLI IK KK+  ++ + ++SL+  F R LRL
Sbjct: 1055 SYWGLYNEGMNRNHFLSFPWCVYDKLILIK-KKVTSRRNSRLSSLESLFARGLRL 1108


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1483 bits (3839), Expect = 0.0
 Identities = 741/1137 (65%), Positives = 885/1137 (77%), Gaps = 4/1137 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+T+K+ GFP++ +A  V+ FLE+H G  GTV ALK+R  +  G  +R + IVQFTT+R 
Sbjct: 2    SKTVKVSGFPSSTTAGAVQVFLESHTGG-GTVEALKIREIRTGG--ARKYAIVQFTTTRA 58

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
            AE+I S A  +L +YG +YL  +  +RDIIP+PRS L  +E   LH G Q S +KFS +W
Sbjct: 59   AEQIISLANPRL-WYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVW 117

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
            +  +V VNFG G+RKL FFLSH   EYKL L +E+IWQI+L  PR ++ K+LLIQ+  AP
Sbjct: 118  SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177

Query: 3081 RIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2902
            RIY++  PS +N+F+ P LNYFRD  D+QW+R  DFTP C IG SS+LCL++P H +LP+
Sbjct: 178  RIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPN 237

Query: 2901 IRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2722
              ENF YYKENEG F+LE G +F R  DLVPIV P   + LPY ILF+VN LVQNG + G
Sbjct: 238  FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 2721 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
              LDD F+ LV+P  +    IE+ALE L +LKE C+EP++W   QY KY  S   PR   
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            +SLD+GLVY+++VQ+TP K++FCGPEVNVSNRVLR++ +DI+NF+R+SFVDEE +K+ S 
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            D+ PR  S +  + T IY RILSTL+ GIVIG+KKFEFLAFSSSQLRENS WMFASR  L
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQKYNF 2008
            TAADIR WMG F +I+NVA+YAARLGQSFGSS ETL+V  HEI+ IPDIE      +Y F
Sbjct: 478  TAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLF 537

Query: 2007 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1831
            SDGIGKISA FAR+VA+KC     TPSAFQIRY GYKGVVA+DP S  KLSLR+SM KY+
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYE 597

Query: 1830 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQE 1651
            SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV D+ FERKQ+EAVDQLD MLTD +RAQE
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQE 657

Query: 1650 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1471
            ALE+MSPGEN  +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GRSMM
Sbjct: 658  ALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 717

Query: 1470 GCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1291
            GCLDETRTLE+GQVFV  S +  +  +D   DMF      +  ++ G V VAKNPCLHPG
Sbjct: 718  GCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSVVVAKNPCLHPG 776

Query: 1290 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1111
            D+R+L+AV+VPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777  DLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISP 836

Query: 1110 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELA 931
            M+Y P     LDHDV IEEVEEYFTNY+VNDSLGVIANAHT  ADKE   A S+ C ELA
Sbjct: 837  MDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELA 896

Query: 930  KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 751
            + FSIAVDFPKTGVPAEIPS+L  +E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T 
Sbjct: 897  RKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956

Query: 750  HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 571
             I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K  YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957  SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016

Query: 570  ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 391
             +KMSKSF+K+ DAEAI +AVRSLKKE R WFNEKGS  D    DD  AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075

Query: 390  PDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQK-KMRMKKVAEMASLQYSFGRSLRL 223
             +YWG YNEGM R HFLSFPW VYDKLI IK++   R+++   + S++  F R L L
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1480 bits (3832), Expect = 0.0
 Identities = 737/1139 (64%), Positives = 890/1139 (78%), Gaps = 7/1139 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKN-VGPRSRAFVIVQFTTSRF 3442
            +TI++ GFPA V+A+ VK FLE+  G  GTV ALK+R PK  VG   R + IVQFTT   
Sbjct: 3    KTIQVFGFPAGVTAEAVKDFLESKTGG-GTVYALKLRTPKKGVG---RLYAIVQFTTKEA 58

Query: 3441 AEEITSKA-EQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTL 3265
            A+ I S A   + L+YG +YL  +  E+D +P+PR+ +  +EH  LH GC++S++KF+ L
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 3264 WNAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAA 3085
            W   +V VNFGFG+RK++F LSH G EY+LEL YE+IW+I+L CPR +  K+LLIQ+  A
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178

Query: 3084 PRIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLP 2905
            PRI++K   S + +++SP  N+F++  DDQW+R  DFTP   IGQS+ LC+++PY  +LP
Sbjct: 179  PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238

Query: 2904 DIRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIM 2725
            D +ENF YYKE+E +F+LE GS++ R LDLVPIV P   I LPY+ILFK+N LVQNG + 
Sbjct: 239  DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 298

Query: 2724 GPTLDDEFFNLVNP--CSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPR 2551
            GP LD  F+ LV+P    +    IEHAL+ L +LKE C+EP+RWL  QY KY  S  +P 
Sbjct: 299  GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPS 358

Query: 2550 LSTISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKM 2371
               ISLD GLVY+HRVQVTP+++YFCGPE+NVSNRVLR F  DI+NF+RISF+DE+ DK+
Sbjct: 359  SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 418

Query: 2370 RSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASR 2191
             S DL PR  S+     T IY RILSTLR GI+IG++KFEFLAFSSSQLRE+SAWMFASR
Sbjct: 419  HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 478

Query: 2190 SELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQK 2017
              LTAA+IR WMG+F EI+NVAKYAARLGQSF SSKETL+V   EI+ IPD++ E    K
Sbjct: 479  YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 538

Query: 2016 YNFSDGIGKISANFARRVALKCDLSSTP-SAFQIRYGGYKGVVAIDPESRFKLSLRKSMC 1840
            Y FSDGIGK+SA FAR+VA KC L   P SAFQIRYGGYKGVVA DP S  KLSLR SM 
Sbjct: 539  YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 598

Query: 1839 KYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIR 1660
            KY+SE  KLDVL+WSKYQPC+LNRQLI+LLSTLG+ D  FE+KQ+EAV QLD +LTD ++
Sbjct: 599  KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 658

Query: 1659 AQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGR 1480
            AQEALE+MSPGEN  +LKE+L+CGYKPDAEPFLSM LQTFRASKL ELRTKTRIFIP GR
Sbjct: 659  AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 718

Query: 1479 SMMGCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCL 1300
            SMMGCLDETRTL YGQVFV IS AG +Q   +   +F  +R  +  ++ G V VAKNPCL
Sbjct: 719  SMMGCLDETRTLNYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLVVVAKNPCL 777

Query: 1299 HPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQ 1120
            HPGDVRVL+AVNVPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WD +LIP +Q
Sbjct: 778  HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 837

Query: 1119 VPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCT 940
             PPM+Y PA +  LDHDV+IE+VEEYFTNY+VNDSLG+IANAHTVFAD+EP  A S+ C 
Sbjct: 838  DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCL 897

Query: 939  ELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAP 760
            +LA+ FSIAVDFPKTGVPAEIP HL+VKE PDFMEKPDKP YES+ VIGKLFRA+KD+AP
Sbjct: 898  QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 957

Query: 759  TTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVL 580
             T  I+ FT+EVAR+SYDPDMEVDGFED+I+DA++ K  YD KLGNLMDYYGIKTE E+L
Sbjct: 958  HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 1017

Query: 579  SGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHV 400
            +GSI+KMSKSF+KR DAEAI +AVR+L+KE R WF EK      D +DDAYAKASAWYHV
Sbjct: 1018 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGS---DTEDDAYAKASAWYHV 1074

Query: 399  TYHPDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
            TYHPDYWG YN GM R HFLSFPW VYD+L+ IK+ K  +       +L+  F + LR+
Sbjct: 1075 TYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA--FPALEQQFRQGLRM 1131


>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
            euphratica]
          Length = 1132

 Score = 1478 bits (3825), Expect = 0.0
 Identities = 734/1136 (64%), Positives = 884/1136 (77%), Gaps = 3/1136 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+T+++ GFP++ +A  V+ FLE++ G  GTV ALK+R  +  G  +R + IVQFTT+R 
Sbjct: 2    SKTVQVSGFPSSATAGAVQVFLESYTGG-GTVEALKIRETRTRG--ARKYAIVQFTTTRA 58

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
             E+I S A Q+L +YG +YL  +  +RDIIP+PRS+L  +E   LH G Q S +KFS +W
Sbjct: 59   TEQIISLANQRL-WYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVW 117

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
            +  +V VNFG G+RKL FFLSH   EYKL L +E+IWQI+L  PR ++ K+LLIQ+  AP
Sbjct: 118  SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177

Query: 3081 RIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2902
            RIY++  PS  N+F+ P LNYFRD  D+QW+R  DFTP C IG SS+LCL++P H +LP+
Sbjct: 178  RIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPN 237

Query: 2901 IRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2722
              ENF YYKENEG F+LE GS+F R  DLVPIV P   + LPY ILF+VN LVQNG + G
Sbjct: 238  FNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 2721 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
              LDD F+ LV+P  +    IEHALE L +LKE C+EP++W   QY KY  S   PR   
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            +SLD+GLVY+++VQ+TP K++FCGPEVN+SNRVLR++ ++I+NF+R+SFVDEE +K+ S 
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            D+ PR  S +  + T IY RILSTLR GIVIG+KKFEFLAFSSSQLRENS WMFASR  L
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQKYNF 2008
            TAADIRRWMG F +I+NVA+YAARLGQSF SS ETL+V +HEI+ I DIE      +Y F
Sbjct: 478  TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537

Query: 2007 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1831
            SDGIGKISA FAR+VA+KC     TPSAFQIRY GYKGVVA+DP S  KLSLR SM KY+
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597

Query: 1830 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQE 1651
            SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV D+ FERKQ+EAVDQLD +LTD +RAQE
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657

Query: 1650 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1471
            AL +MSPGEN  +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GR MM
Sbjct: 658  ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717

Query: 1470 GCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1291
            GCLDETRTLE+GQVFV  S +  +  +D   D+F      +  ++ G V VAKNPCLHPG
Sbjct: 718  GCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAKNPCLHPG 776

Query: 1290 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1111
            DVR+L+AV+VPALHHMVDCV+FPQKG RPHPN+CSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777  DVRILKAVDVPALHHMVDCVVFPQKGPRPHPNQCSGSDLDGDIYFVCWDPELIPSQQISP 836

Query: 1110 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELA 931
            M+Y P     LDHDV IEEVEEYFTNY+VNDSLG+IANAHT FADKE   A S+ C ELA
Sbjct: 837  MDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELA 896

Query: 930  KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 751
            + FSIAVDFPKTGVPAEIPS+L V+E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T 
Sbjct: 897  RKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956

Query: 750  HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 571
             I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K  YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957  SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016

Query: 570  ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 391
             +KMSKSF+K+ DAEAI +AVRSL+KE R WFNEKGS  D    DD  AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075

Query: 390  PDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             +YWG YNEGM R HFLSFPW +YDKLI IK+   R+++   + S++  F R L L
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSRGLHL 1131


>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
            euphratica]
          Length = 1132

 Score = 1476 bits (3822), Expect = 0.0
 Identities = 734/1136 (64%), Positives = 883/1136 (77%), Gaps = 3/1136 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+T+++ GFP++ +A  V+ FLE++ G  GTV ALK+R  +  G  +R + IVQFTT+R 
Sbjct: 2    SKTVQVSGFPSSATAGAVQVFLESYTGG-GTVEALKIRETRTRG--ARKYAIVQFTTTRA 58

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
             E+I S A Q+L +YG +YL  +  +RDIIP+PRS+L  +E   LH G Q S +KFS +W
Sbjct: 59   TEQIISLANQRL-WYGRSYLNARPMDRDIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVW 117

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
            +  +V VNFG G+RKL FFLSH   EYKL L +E+IWQI+L  PR ++ K+LLIQ+  AP
Sbjct: 118  SGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAP 177

Query: 3081 RIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPD 2902
            RIY++  PS  N+F+ P LNYFRD  D+QW+R  DFTP C IG SS+LCL++P H +LP+
Sbjct: 178  RIYEREVPSSLNLFEDPLLNYFRDIPDEQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPN 237

Query: 2901 IRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMG 2722
              ENF YYKENEG F+LE GS+F R  DLVPIV P   + LPY ILF+VN LVQNG + G
Sbjct: 238  FNENFFYYKENEGTFVLESGSTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 2721 PTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
              LDD F+ LV+P  +    IEHALE L +LKE C+EP++W   QY KY  S   PR   
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEHALEKLYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPV 357

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            +SLD+GLVY+++VQ+TP K++FCGPEVN+SNRVLR++ ++I+NF+R+SFVDEE +K+ S 
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNISNRVLRQYLEEIDNFLRVSFVDEELEKIHST 417

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            D+ PR  S +  + T IY RILSTLR GIVIG+KKFEFLAFSSSQLRENS WMFASR  L
Sbjct: 418  DVSPRTSSRNELRRTAIYNRILSTLRNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGL 477

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQKYNF 2008
            TAADIRRWMG F +I+NVA+YAARLGQSF SS ETL+V +HEI+ I DIE      +Y F
Sbjct: 478  TAADIRRWMGSFHQIRNVARYAARLGQSFSSSTETLSVSRHEIEIISDIEVSRGGTRYLF 537

Query: 2007 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1831
            SDGIGKISA FAR+VA+KC     TPSAFQIRY GYKGVVA+DP S  KLSLR SM KY+
Sbjct: 538  SDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYE 597

Query: 1830 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQE 1651
            SEN KLDVL+ SKYQPC+LNRQLITLLSTLGV D+ FERKQ+EAVDQLD +LTD +RAQE
Sbjct: 598  SENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAILTDPLRAQE 657

Query: 1650 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1471
            AL +MSPGEN  +LKEMLLCGY+PDAEPFLSM LQTFRASKL ELRTKTRIFIP GR MM
Sbjct: 658  ALVLMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRLMM 717

Query: 1470 GCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1291
            GCLDETRTLE+GQVFV  S +  +  +D   D+F      +  ++ G V VAKNPCLHPG
Sbjct: 718  GCLDETRTLEHGQVFVQFSGSRFRNLYDSS-DVFSERGRGQCYLIEGSVVVAKNPCLHPG 776

Query: 1290 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1111
            DVR+L+AV+VPALHHMVDCV+FPQKG RPHP ECSGSDLDGDIYFV WDP+LIPS+Q+ P
Sbjct: 777  DVRILKAVDVPALHHMVDCVVFPQKGPRPHPKECSGSDLDGDIYFVCWDPELIPSQQISP 836

Query: 1110 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELA 931
            M+Y P     LDHDV IEEVEEYFTNY+VNDSLG+IANAHT FADKE   A S+ C ELA
Sbjct: 837  MDYTPEPTLQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTAFADKESLKAMSEPCLELA 896

Query: 930  KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 751
            + FSIAVDFPKTGVPAEIPS+L V+E PDFMEKPDKP+YES+ VIGKLFR +KD+AP T 
Sbjct: 897  RKFSIAVDFPKTGVPAEIPSNLRVREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTS 956

Query: 750  HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 571
             I+SFT +VAR+ YDPDMEVDGFEDYI+DA ++K  YD KLGNLM+YYGIKTE E+LSGS
Sbjct: 957  SIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGS 1016

Query: 570  ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 391
             +KMSKSF+K+ DAEAI +AVRSL+KE R WFNEKGS  D    DD  AKASAWYHVTYH
Sbjct: 1017 FMKMSKSFTKKRDAEAIGMAVRSLRKEARSWFNEKGSGLDSQA-DDVDAKASAWYHVTYH 1075

Query: 390  PDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             +YWG YNEGM R HFLSFPW +YDKLI IK+   R+++   + S++  F R L L
Sbjct: 1076 HNYWGCYNEGMNRDHFLSFPWCLYDKLIQIKKNSARIRRSRILHSVERQFSRGLHL 1131


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1475 bits (3818), Expect = 0.0
 Identities = 740/1135 (65%), Positives = 883/1135 (77%), Gaps = 3/1135 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GF + VSA +VK FLE + G E TV ALK+R  K  G   RAF IVQFT S  A
Sbjct: 3    KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAFAIVQFTRSSDA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
              I   A Q+L YYG +YL  ++ E DI+PKPR  L  +E   ++ GCQVS++KF  LW 
Sbjct: 59   GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
            A +V +NFG G+RKL F LS+   +YKLELFYE+IWQI+LRCP  ++ K LLIQ+  APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IY+K  P+   +FD P LNYF+D  DDQW+R  DFT   CIGQSS L L++P++ +LP+ 
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF YYKENEG+ +LE GSS+   L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LDD F+ LV+PC +   YI+HALE L  L+E C+EP+RWL  +Y  ++ S +     TI
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            +  R R       TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR  LT
Sbjct: 418  VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIET--ESQKYNFS 2005
            AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI+ IPDIE   +  KY FS
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531

Query: 2004 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FA++VA KC L   TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532  DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEA 651

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETRTL YGQVFV                 F G+R +   ++ GKV VAKNPCLHPGD
Sbjct: 712  CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756  VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA+   LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP  A S  C ELAK
Sbjct: 816  DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAK 875

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP  L VKE PDFMEKPDKP+Y+S  VIGKLFR +K++AP    
Sbjct: 876  LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+  TRE  ++ YDPDMEV+GFEDYI+DA + K +YD KLGNLMDYYG+KTE E+L G I
Sbjct: 936  IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGI 995

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMS+SF+K+ DAEAIS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYHP
Sbjct: 996  MKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHP 1054

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             YWG YNEGM R HFLSFPW VYDKLI IK++K  +++  +++SL++ F R L L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>ref|XP_012072326.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha
            curcas]
          Length = 1150

 Score = 1474 bits (3816), Expect = 0.0
 Identities = 737/1150 (64%), Positives = 885/1150 (76%), Gaps = 3/1150 (0%)
 Frame = -2

Query: 3669 SSYQFV*IYSGSMAGRSRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVG 3490
            SSY+ +      +A   +TI + GFP  V+ D+VK  LE+H G+ GTV A+K+R  KN G
Sbjct: 10   SSYRVIFGSLWGIALMGKTIHVYGFPPDVTVDEVKKCLESHSGD-GTVFAMKIRETKNGG 68

Query: 3489 PRSRAFVIVQFTTSRFAEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTV 3310
             R   + IVQF T+R AE I S    K + YG +YL  +   +DI+P PR+ L +++H  
Sbjct: 69   QRK--YAIVQFQTARDAELIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHIT 124

Query: 3309 LHIGCQVSDDKFSTLWNAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCP 3130
            LH GC++S +KFS LW   +V VNFGFGLRKL FFLSH+ ++YKL+L YE++WQI+L CP
Sbjct: 125  LHFGCRISKEKFSVLWTGTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCP 184

Query: 3129 RKRSKKFLLIQVQAAPRIYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQ 2950
            R RS K+LLIQ+  APRI++K   S +N+F+SP  NYF+DT D+QW+R +DFTP C IG 
Sbjct: 185  RGRSVKYLLIQLYGAPRIFEKEIAS-SNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGH 243

Query: 2949 SSTLCLQVPYHQKLPDIRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYK 2770
            SS LCL+ P    +P  +ENF YYKE+E  F+LE G++F   LDLVPIV P   + LP++
Sbjct: 244  SSGLCLEFPSSINVPKFQENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFE 303

Query: 2769 ILFKVNSLVQNGIIMGPTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRR 2590
            ILF+VN LVQ+G + G  LD  F+ LV+P  ++ D IEHALE L +LKE C+EP+ WL  
Sbjct: 304  ILFRVNLLVQHGCLPGSALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNE 363

Query: 2589 QYNKYAMSLRRPRLSTISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENF 2410
            QY KY  S   PR  +ISLD+GL Y+ R Q+TP K YFCGPEVNVSNRV+R +S DI NF
Sbjct: 364  QYRKYLTSKYLPRSPSISLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNF 423

Query: 2409 IRISFVDEEWDKMRSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSS 2230
            +R+SFVDEE  K+ S DL PRA S +G++ T IY RILSTL+ GIVIG K+FEFLAFSSS
Sbjct: 424  LRVSFVDEELGKIHSTDLSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSS 483

Query: 2229 QLRENSAWMFASRSELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEID 2050
            QLRENS WMFASR  LTAADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V++++I+
Sbjct: 484  QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIE 543

Query: 2049 FIPDIETES--QKYNFSDGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDP 1879
             +PDIE E    KY FSDGIGKISA FARRVALKC      PSAFQIRYGGYKGVVA+DP
Sbjct: 544  ILPDIEAERGRTKYLFSDGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDP 603

Query: 1878 ESRFKLSLRKSMCKYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEA 1699
             S  KLSLRKSMCKY+SEN KLDVL +SKYQPC+LNRQ+ITLLSTLGV D+ FE+KQ+EA
Sbjct: 604  TSSKKLSLRKSMCKYESENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREA 663

Query: 1698 VDQLDMMLTDSIRAQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFE 1519
            VDQLD +LT+S+RAQEAL++MSPGE   +L EMLLCGY+PDAEPFL+M LQ FRASKL +
Sbjct: 664  VDQLDAILTNSLRAQEALDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLD 723

Query: 1518 LRTKTRIFIPKGRSMMGCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVV 1339
            +RTK+RIF+P GRSMMGCLDETR LEYGQVFV  S +  KQ +D    MF G       V
Sbjct: 724  VRTKSRIFVPNGRSMMGCLDETRNLEYGQVFVQFSGSKHKQVYDSST-MFGGIGSGNRFV 782

Query: 1338 LVGKVFVAKNPCLHPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIY 1159
            + G+V VAKNPCLHPGD+RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIY
Sbjct: 783  IEGQVIVAKNPCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIY 842

Query: 1158 FVSWDPDLIPSRQVPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFA 979
            FV WDPDLIP  Q+PPM+Y P  +  LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFA
Sbjct: 843  FVCWDPDLIPRLQIPPMDYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFA 902

Query: 978  DKEPRMAESDYCTELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRV 799
            D+EP  A S  C ELA  FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ V
Sbjct: 903  DREPAKAMSKPCLELASKFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNV 962

Query: 798  IGKLFRAIKDMAPTTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNL 619
            IGKLFRA++D+AP T  I+SFT EVAR+ YDPDMEVDGF+DYI+DA  +K  YD KLGN 
Sbjct: 963  IGKLFRAVRDIAPHTSSIKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNH 1022

Query: 618  MDYYGIKTEPEVLSGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDID 439
            MDYYGI+TE E+L GSI+KMSK+F+K+ DAEAI LAV SL KE R WFNE GS  D + +
Sbjct: 1023 MDYYGIRTEAEILGGSIMKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSE-E 1081

Query: 438  DDAYAKASAWYHVTYHPDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMA 259
            DD YAKASAWY+VTYHP YWG YNEGM R HFLSFPW VYDKLI IK+K    ++   ++
Sbjct: 1082 DDVYAKASAWYYVTYHPTYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRK----RRCQPLS 1137

Query: 258  SLQYSFGRSL 229
            SL+  FG  L
Sbjct: 1138 SLERQFGLGL 1147


>ref|XP_012072327.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas] gi|802596581|ref|XP_012072328.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Jatropha
            curcas]
          Length = 1126

 Score = 1472 bits (3812), Expect = 0.0
 Identities = 733/1133 (64%), Positives = 878/1133 (77%), Gaps = 3/1133 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI + GFP  V+ D+VK  LE+H G+ GTV A+K+R  KN G R   + IVQF T+R A
Sbjct: 3    KTIHVYGFPPDVTVDEVKKCLESHSGD-GTVFAMKIRETKNGGQRK--YAIVQFQTARDA 59

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I S    K + YG +YL  +   +DI+P PR+ L +++H  LH GC++S +KFS LW 
Sbjct: 60   ELIISL--NKRIRYGTSYLKARTLAKDIVPNPRTFLHSMDHITLHFGCRISKEKFSVLWT 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
              +V VNFGFGLRKL FFLSH+ ++YKL+L YE++WQI+L CPR RS K+LLIQ+  APR
Sbjct: 118  GTNVSVNFGFGLRKLQFFLSHEQMDYKLDLSYENVWQIELHCPRGRSVKYLLIQLYGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            I++K   S +N+F+SP  NYF+DT D+QW+R +DFTP C IG SS LCL+ P    +P  
Sbjct: 178  IFEKEIAS-SNVFESPLFNYFKDTPDEQWVRTIDFTPFCLIGHSSGLCLEFPSSINVPKF 236

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            +ENF YYKE+E  F+LE G++F   LDLVPIV P   + LP++ILF+VN LVQ+G + G 
Sbjct: 237  QENFSYYKESEAIFVLENGNAFSCNLDLVPIVGPPSGVDLPFEILFRVNLLVQHGCLPGS 296

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LD  F+ LV+P  ++ D IEHALE L +LKE C+EP+ WL  QY KY  S   PR  +I
Sbjct: 297  ALDSSFYKLVDPSRMNIDCIEHALEKLFHLKECCYEPSMWLNEQYRKYLTSKYLPRSPSI 356

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD+GL Y+ R Q+TP K YFCGPEVNVSNRV+R +S DI NF+R+SFVDEE  K+ S D
Sbjct: 357  SLDTGLEYVRRGQITPCKAYFCGPEVNVSNRVIRRYSKDINNFLRVSFVDEELGKIHSTD 416

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            L PRA S +G++ T IY RILSTL+ GIVIG K+FEFLAFSSSQLRENS WMFASR  LT
Sbjct: 417  LSPRASSGNGDRRTAIYNRILSTLQNGIVIGNKRFEFLAFSSSQLRENSCWMFASRDGLT 476

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETES--QKYNFS 2005
            AADIR WMG+F +I+NVAKYAARLGQSFGSS ETL+V++++I+ +PDIE E    KY FS
Sbjct: 477  AADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVRRNQIEILPDIEAERGRTKYLFS 536

Query: 2004 DGIGKISANFARRVALKCDLSST-PSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FARRVALKC      PSAFQIRYGGYKGVVA+DP S  KLSLRKSMCKY+S
Sbjct: 537  DGIGKISAEFARRVALKCGHQGFYPSAFQIRYGGYKGVVAVDPTSSKKLSLRKSMCKYES 596

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL +SKYQPC+LNRQ+ITLLSTLGV D+ FE+KQ+EAVDQLD +LT+S+RAQEA
Sbjct: 597  ENTKLDVLGYSKYQPCFLNRQMITLLSTLGVPDHIFEKKQREAVDQLDAILTNSLRAQEA 656

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            L++MSPGE   +L EMLLCGY+PDAEPFL+M LQ FRASKL ++RTK+RIF+P GRSMMG
Sbjct: 657  LDLMSPGETTNILNEMLLCGYQPDAEPFLAMMLQMFRASKLLDVRTKSRIFVPNGRSMMG 716

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETR LEYGQVFV  S +  KQ +D    MF G       V+ G+V VAKNPCLHPGD
Sbjct: 717  CLDETRNLEYGQVFVQFSGSKHKQVYDSST-MFGGIGSGNRFVIEGQVIVAKNPCLHPGD 775

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            +RVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDPDLIP  Q+PPM
Sbjct: 776  IRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPRLQIPPM 835

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y P  +  LDHDV I+EV EYFTNY++NDSLG+I+NAHTVFAD+EP  A S  C ELA 
Sbjct: 836  DYTPEPSLQLDHDVTIQEVAEYFTNYILNDSLGIISNAHTVFADREPAKAMSKPCLELAS 895

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
             FSIAVDFPKTGVPAEI SHL VKE PDFMEKPDKP YES+ VIGKLFRA++D+AP T  
Sbjct: 896  KFSIAVDFPKTGVPAEIHSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAVRDIAPHTSS 955

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+SFT EVAR+ YDPDMEVDGF+DYI+DA  +K  YD KLGN MDYYGI+TE E+L GSI
Sbjct: 956  IKSFTLEVARQCYDPDMEVDGFKDYIDDAFDYKSNYDYKLGNHMDYYGIRTEAEILGGSI 1015

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMSK+F+K+ DAEAI LAV SL KE R WFNE GS  D + +DD YAKASAWY+VTYHP
Sbjct: 1016 MKMSKAFTKKRDAEAIGLAVSSLIKEARSWFNENGSGLDSE-EDDVYAKASAWYYVTYHP 1074

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSL 229
             YWG YNEGM R HFLSFPW VYDKLI IK+K    ++   ++SL+  FG  L
Sbjct: 1075 TYWGRYNEGMNRDHFLSFPWCVYDKLIQIKRK----RRCQPLSSLERQFGLGL 1123


>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1470 bits (3806), Expect = 0.0
 Identities = 744/1139 (65%), Positives = 891/1139 (78%), Gaps = 6/1139 (0%)
 Frame = -2

Query: 3621 SRTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRF 3442
            S+TI++ GFP+ VSAD++K FLE + GE GT+ AL+++ P++    + A V  QFT+   
Sbjct: 2    SKTIQVYGFPSIVSADEIKEFLEKYTGE-GTIEALEIKQPRSGASMTHAKV--QFTSFEL 58

Query: 3441 AEEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLW 3262
            AE I +  ++K+ +YG  YL  ++ + DIIPKPR+ L +++   LH GCQ+SD++F  LW
Sbjct: 59   AEFIITLCKKKV-WYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLW 117

Query: 3261 NAADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAP 3082
             A +V V FG GLRK  FFLSH   EYKLEL YE+IWQIQL+ PR +  KFLLIQ+  AP
Sbjct: 118  KAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAP 177

Query: 3081 RIYKKAAPSYNNIFDSPFLNY-FRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLP 2905
            +IY+K         D P L+Y F++  DDQW+R +DFTP C IGQS  LCL++PY  +LP
Sbjct: 178  QIYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP 228

Query: 2904 DIRENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIM 2725
            + RENF YYKEN+G+FILE GSS+   L LVPI+ P Q   LP++ILFK+N+LVQNG + 
Sbjct: 229  NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288

Query: 2724 GPTLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLS 2545
            GPTLD  FF LV+P      +IEHALE L +LKE C+EP RWL  QY  Y   +++P   
Sbjct: 289  GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY---VKKPVAG 345

Query: 2544 T--ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKM 2371
            +  ISLD+GLVY+ RVQ+TP K+YFCGPEVNVSNRVLR + +DI+NF+R+SF+DE  +K+
Sbjct: 346  SPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKI 405

Query: 2370 RSMDLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASR 2191
             S  + PR  S +G + TG+Y+RILS L+ GIVIG+KKF+FLAFSSSQLR+NSAWMFASR
Sbjct: 406  HSTVISPRM-SKEGRR-TGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASR 463

Query: 2190 SELTAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQK-- 2017
              LTAA+IR WMGDFS+I+NVAKYAARLGQSF SSKETL V K EI+ IPDIE    +  
Sbjct: 464  PGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTT 523

Query: 2016 YNFSDGIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMC 1840
            Y FSDGIGKIS   A RVA+KC   SSTPSAFQIRYGGYKGVVA+DP S  KLSLRKSM 
Sbjct: 524  YVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMF 583

Query: 1839 KYKSENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIR 1660
            KY+S+N  LDVL+WSKYQP +LNRQLITLLSTLGVKD+ FE+KQ+ AVDQLD +L D + 
Sbjct: 584  KYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVA 643

Query: 1659 AQEALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGR 1480
            AQEALE+MSPGEN  VLKEML+CGYKPDAEPFLSM LQTFRA+KL ELRTKTRIF+P GR
Sbjct: 644  AQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGR 703

Query: 1479 SMMGCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCL 1300
            SMMGCLDETRTLEYG+VFV IS  G +Q F D L         ++ +L GK+ VAKNPCL
Sbjct: 704  SMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCL 763

Query: 1299 HPGDVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQ 1120
            HPGDVRVL AVNVP LHHMVDCV+FPQKG+RPHPNECSGSDLDGDIYFV WD DLIP +Q
Sbjct: 764  HPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQ 823

Query: 1119 VPPMEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCT 940
            + PM+Y PA  ++LDHDV IEEVEEYFTNY+VNDSLG+IANAHTVFADKE   A  D CT
Sbjct: 824  INPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCT 883

Query: 939  ELAKLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAP 760
            ELAKLFSIAVDFPKTGVPAEIP +L VKE PDFMEK DKP YES+ VIGKLFR +KD+AP
Sbjct: 884  ELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAP 943

Query: 759  TTGHIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVL 580
               +I+SFTR+VAR+SYDPDMEV GFEDY+ DA ++K +YD KLGNLMDYYGIKTE E+L
Sbjct: 944  HNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEIL 1003

Query: 579  SGSILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHV 400
            SGSI++MSKSF +R DAEAI LAV+SL+KE R WFN+ GS+TD +  DD YAKASAWYHV
Sbjct: 1004 SGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEA-DDVYAKASAWYHV 1062

Query: 399  TYHPDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
            TYHPDYWG YNEGM R HFLSFPW VYDKLIH K+KKM  + +  ++SL+    + LRL
Sbjct: 1063 TYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSL-HLSSLERRLSQGLRL 1120


>gb|KHG26498.1| RNA-dependent RNA polymerase 1 -like protein [Gossypium arboreum]
            gi|728850182|gb|KHG29625.1| RNA-dependent RNA polymerase
            1 -like protein [Gossypium arboreum]
          Length = 1110

 Score = 1468 bits (3801), Expect = 0.0
 Identities = 736/1135 (64%), Positives = 881/1135 (77%), Gaps = 3/1135 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GF + VSA +VK FLE + G E TV ALK+R  K  G   RA+ IVQFT S  A
Sbjct: 3    KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAYAIVQFTRSSDA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
              I   A Q+L YYG +YL  ++ E DI+PKPR  L  +E   ++ GCQVS++KF  LW 
Sbjct: 59   GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
            A +V +NFG G+RKL F LS+   +YKLELFYE+IWQI+LRCP  ++ K LLIQ+  APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IY+    +   +FD P LNYF+D  DDQW+R  DFT   CIGQSS LCL++P++ +LP+ 
Sbjct: 178  IYETEVRASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF YYKENEG+ +LE GSS+   L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LDD F+ LV+PC +   YI+HALE L  L+E C+EP+RWL  +Y  ++ S +     TI
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            +  R R       TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR  LT
Sbjct: 418  VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIET--ESQKYNFS 2005
            AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI+ IPDIE   +  KY FS
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531

Query: 2004 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FA++VA KC L   TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532  DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETRTL YGQVFV                 F G+R +   ++ GKV VAKNPCLHPGD
Sbjct: 712  CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756  VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA+   LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP  A S  C ELAK
Sbjct: 816  DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP  L VKE PDFMEKPDKP+Y+S  VIGKLFR +K++AP    
Sbjct: 876  LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+  TRE  ++ YDPDMEV+GFEDYI+DA ++K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936  IKLLTREKMKRFYDPDMEVEGFEDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMS+SF+K+ DAE IS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYH 
Sbjct: 996  MKMSRSFTKKRDAEVISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHH 1054

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             YWG YNEGM R HFLSFPW VYDKLI IK++K  +++  +++SL++ F R   L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHCFQRGFHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1466 bits (3796), Expect = 0.0
 Identities = 735/1135 (64%), Positives = 880/1135 (77%), Gaps = 3/1135 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GF + VSA +VK FLE + G E TV ALK+R  K  G   RAF IVQFT S  A
Sbjct: 3    KTIQVYGFLSDVSAGEVKTFLEGYTGRE-TVYALKIRQHKKSG---RAFAIVQFTRSSDA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
              I   A Q+L YYG +YL  ++ E DI+PKPR  L  +E   ++  C VS++KF  LW 
Sbjct: 59   GLIIRLANQRL-YYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
            A +V +NFG G+RKL F LS+   +YKLELFYE+IWQI+LRCP  ++ K LLIQ+  APR
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IY+K  P+   +FD P LNYF+D  DDQW+R  DFT   CIGQSS LCL++P++ +LP+ 
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF YYKENEG+ +LE GSS+   L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238  RENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LDD F+ LV+PC +   YI+HALE L  L+E C+EP+RWL  +Y  ++ S +     TI
Sbjct: 298  ALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S +
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTN 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            +  R R       TGIYKRILSTLR GIVIG K+FEFLAFSSSQLRENSAWMFASR  LT
Sbjct: 418  VQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIET--ESQKYNFS 2005
            AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI+ IPDIE   +  KY F 
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFP 531

Query: 2004 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FA++VA KC L   TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532  DGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E VDQL+ +LTD + AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEA 651

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGYKPDAEPFLSM L+TFRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMG 711

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETRTL YGQVFV                 F G+R +   ++ GKV VAKNPCLHPGD
Sbjct: 712  CLDETRTLNYGQVFVQ----------------FSGSRSERRFIVQGKVIVAKNPCLHPGD 755

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGD+YFV WDP+LIP +Q+ PM
Sbjct: 756  VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPM 815

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA+   LDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP  A S  C ELAK
Sbjct: 816  DYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAK 875

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP  L VKE PDFMEKPDKP+Y+S  VIGKLFR +K++AP    
Sbjct: 876  LFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECS 935

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+  TRE  ++ YDPDMEV+GF DYI+DA ++K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936  IKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGI 995

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +KMS+SF+K+ DAE+IS+AVRSL+KE R WFNEKGS+ D +I DDAYAKASAWY+VTYH 
Sbjct: 996  MKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEI-DDAYAKASAWYYVTYHH 1054

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             YWG YNEGM R HFLSFPW VYDKLI IK++K  +++  +++SL++ F R   L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>ref|XP_012463738.1| PREDICTED: RNA-dependent RNA polymerase 1 [Gossypium raimondii]
            gi|763812161|gb|KJB79013.1| hypothetical protein
            B456_013G029000 [Gossypium raimondii]
          Length = 1110

 Score = 1464 bits (3790), Expect = 0.0
 Identities = 732/1135 (64%), Positives = 883/1135 (77%), Gaps = 3/1135 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GF + VSA +VK FLE + G E TV ALK+R  K  G   RA+ IVQFT S  A
Sbjct: 3    KTIQVYGFLSNVSAGEVKTFLEGYTGRE-TVYALKIRQHKKGG---RAYAIVQFTRSSAA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I   A Q+L YYG +YL  ++ E DI+PKPR+ L  +E   ++ GCQVS +KF  LW 
Sbjct: 59   ELIIRLANQRL-YYGRSYLKAREMETDIVPKPRAFLHTMERVTVNFGCQVSVEKFYVLWK 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
            A +V +NFG G+RKL F +S+   +YKLELFYE+IWQI+LRCP  ++ K LLIQ+  APR
Sbjct: 118  AENVTLNFGTGMRKLEFLVSYCRSKYKLELFYENIWQIELRCPDSQTSKHLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IY+K   +   +FD P LNYF+D  DDQW+R  DFT   CIGQSS LCL++P++ +LP+ 
Sbjct: 178  IYEKEVRASELVFDDPLLNYFKDVPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLRLPNF 237

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF YYKENE + +LE GSS+   L LVPIV P + I LP++ILFKVN LVQNG I GP
Sbjct: 238  RENFAYYKENESRLVLESGSSYSCNLSLVPIVCPLRVIDLPFEILFKVNLLVQNGCIPGP 297

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LDD F+ LV+PC +D  YI+HALE L  L+E C+EP+RWL  +Y  ++ S +      I
Sbjct: 298  ALDDTFYRLVDPCRMDKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPAI 357

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SLD GLVY+ RVQ+TP+++YFCGPE+NVSNRVLR+F +DI+NF+RISFVDEE +K+ S++
Sbjct: 358  SLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSIN 417

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            +  R R       T IY+RILSTLR G++IG+K+FEFLAFSSSQLRENSAWMFASR  LT
Sbjct: 418  VQARGR------RTSIYERILSTLRNGVLIGDKRFEFLAFSSSQLRENSAWMFASRKGLT 471

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIET--ESQKYNFS 2005
            AADIR WMG+FS+I+NVAKYAARLGQSF SS ETL+V K EI+ IPDIE   +  KY FS
Sbjct: 472  AADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFS 531

Query: 2004 DGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FA++VA KC L   TPSAFQIR GG+KGVVAIDP S +KLSLRKSM KY+S
Sbjct: 532  DGIGKISAKFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYES 591

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQLITLLSTLGV D AFE+KQ+E ++QL+ +LTD + AQEA
Sbjct: 592  ENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVIEQLNALLTDPLEAQEA 651

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            LE+MSPGEN  +LKEMLLCGYKPDAEPFLSM L+ FRASKL ELRTK RIF+ KGRSMMG
Sbjct: 652  LELMSPGENTNILKEMLLCGYKPDAEPFLSMMLEAFRASKLLELRTKARIFVQKGRSMMG 711

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDETRTL YGQVFV                 F G+R ++  ++ GKV VAKNPCLHPGD
Sbjct: 712  CLDETRTLNYGQVFVQ----------------FSGSRSEQRCIVQGKVIVAKNPCLHPGD 755

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL+AVNVP LHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WDP+LIP +Q+ PM
Sbjct: 756  VRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDIYFVCWDPELIPYKQMDPM 815

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA   ILDH+V IEE+EEYFTNY+VNDSLG+I+NAHT FAD+EP  A    C ELAK
Sbjct: 816  DYSPAPTTILDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMCHPCLELAK 875

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIP  L VKE PDFMEKPDKP+Y+S  VIGKLFR +K++AP    
Sbjct: 876  LFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECS 935

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
            I+  TRE  ++ YDPDMEV+GFEDYI+DA + K +YD KLGNLMDYYG+KTE E+LSG I
Sbjct: 936  IKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILSGGI 995

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            LKMS+SF+K+ DAEAIS+AVRSL+KE R WFNE+ S+ D +I DDAYAKASAWY+VTYHP
Sbjct: 996  LKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEERSELDEEI-DDAYAKASAWYYVTYHP 1054

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
             YWG YNEGM R HFLSFPW VYDKLI IK++K  +++  +++SL++ F R L L
Sbjct: 1055 SYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRRLHL 1109


>ref|XP_010093320.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
            gi|587864166|gb|EXB53859.1| RNA-dependent RNA polymerase
            1 [Morus notabilis]
          Length = 1133

 Score = 1436 bits (3717), Expect = 0.0
 Identities = 718/1136 (63%), Positives = 879/1136 (77%), Gaps = 4/1136 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GFP+ VSA+ VK FLE H G  GTV A+K+RP KN G  SR++ IVQF T   A
Sbjct: 3    KTIQLSGFPSHVSAESVKEFLEGHTGR-GTVYAIKIRPTKNGG--SRSYAIVQFMTVETA 59

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I   A  +L +YG +YL  +  ERDI+PKPR+TL +L++  LH GCQ+S +KFS LW 
Sbjct: 60   ELIIRLANPRL-WYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
              +V V+FG GLR+L+F+L++  +EY+L+L YE++WQI+L  PR ++ K+LLIQ+  APR
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            +Y+K      +I ++P  NYF+DT DDQW+RA DFT  CCIG SS L L++PY   LPD+
Sbjct: 179  VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            RENF+YYKE+E +FILE GSSF R LDLVPIV P   I LP++ +FK+N L+QNG + GP
Sbjct: 239  RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298

Query: 2718 TLDDEFFNLVNPCSIDN-DYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLST 2542
            TLD +F+ LV+P  I N D I +ALE L NLKE  +EPA WL  QY KY  + R P+   
Sbjct: 299  TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358

Query: 2541 ISLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSM 2362
            I+LDSGLVY+ RVQVTP+K+YFCGPE+NVSNRVLRE+ D I+ F+R+SFVDEE +K+ S 
Sbjct: 359  IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418

Query: 2361 DLIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSEL 2182
            DL PR  +++ ++ TGIY+RILS LR GI IG++KFEFLAFSSSQLR+NS WMFA+    
Sbjct: 419  DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478

Query: 2181 TAADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQKYNF 2008
            +A  IR+W+GDF  I+NVAKYAARLGQSFGSS ETLTV + E + I DIE E  + KY F
Sbjct: 479  SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538

Query: 2007 SDGIGKISANFARRVALKCDLSS-TPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYK 1831
            SDGIGKIS+ FA+RVA KC L    PSAFQIRY GYKGVVA+DP S  KLSLRKSM KY+
Sbjct: 539  SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598

Query: 1830 SENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQE 1651
            SE  KLDVL++SK Q CYLNRQLITLLSTLGV D  FE+KQ+EAV QL+ +L D +RA+E
Sbjct: 599  SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658

Query: 1650 ALEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMM 1471
            AL++MS GE   +LKE+L CGY+P+AEPFLSM LQ FRASKL ELRTKTRI IP GR+MM
Sbjct: 659  ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718

Query: 1470 GCLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPG 1291
            GCLDE RTLEYG+VFV  S    + FF+D   M  G    ++ ++VG+V VAKNPCLHPG
Sbjct: 719  GCLDEMRTLEYGEVFVQFSGITHRPFFEDSF-MLGGTGSGQNYIVVGRVVVAKNPCLHPG 777

Query: 1290 DVRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPP 1111
            DVRVL+AVNVPALHHMVDCV+FPQKG RPHPNECSGSDLDGDIYFV WD +LIP +Q  P
Sbjct: 778  DVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEP 837

Query: 1110 MEYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELA 931
            M+Y PA    LDHDVRIEEV+EYFTNY+VNDSLG+IANAHT FADKEP  A S  C ELA
Sbjct: 838  MDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELA 897

Query: 930  KLFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTG 751
            +LFSIAVDFPKTGVPA IP  L+VKE PDFMEK +KP YES+ VIGKLFR +KD+AP  G
Sbjct: 898  RLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVG 957

Query: 750  HIQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGS 571
             +  FT+EVA +SYDPDME DGFEDYI+DA ++K  YD KLGNL+DYYGIK+E E++ GS
Sbjct: 958  SLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGS 1017

Query: 570  ILKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYH 391
            I++MSKSF+KR DAE+I++AVR+L+KE R WFNEKGS  D    DD YAKASAWY+VTYH
Sbjct: 1018 IMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLD-SAADDVYAKASAWYYVTYH 1076

Query: 390  PDYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLRL 223
              YWG YNEGM R H+LSFPW VYDKL+ IK+ K  +++  +M+SL+ +F R L L
Sbjct: 1077 HSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>ref|XP_010917517.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2 [Elaeis
            guineensis] gi|743774333|ref|XP_010917518.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 isoform X2
            [Elaeis guineensis]
          Length = 1075

 Score = 1436 bits (3716), Expect = 0.0
 Identities = 717/1058 (67%), Positives = 847/1058 (80%), Gaps = 3/1058 (0%)
 Frame = -2

Query: 3387 YLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWNAADVEVNFGFGLRKLSF 3208
            +L V+D ERDI+PKPR++L  LE+  LH G  VS +KFS LW+A DV+VNFGF LRK+ F
Sbjct: 23   FLEVRDVERDIVPKPRTSLFILENATLHFGSPVSQNKFSVLWSAMDVKVNFGFNLRKIYF 82

Query: 3207 FLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPRIYKKAAPSYNNIFDSPF 3028
            FLS  G  YK EL YESIW+IQL     +  +FLLIQV AAP+IY+    +   + + P 
Sbjct: 83   FLSRGGHSYKFELAYESIWEIQLHRSSTQHLQFLLIQVVAAPKIYELFPRNSGLLLEDPI 142

Query: 3027 LNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDIRENFIYYKENEGQFILE 2848
             NYF+D  DDQW+R  DF+PLC IGQSS LCLQ+ Y   LP+IR+ F++YKE+EG F LE
Sbjct: 143  YNYFKDPPDDQWVRTTDFSPLCSIGQSSALCLQLSYDCDLPNIRDYFVFYKESEGHFDLE 202

Query: 2847 GGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGPTLDDEFFNLVNPCSIDN 2668
             G S+   LDLVPIVEP  RI +PYKILFK+N +VQNG + GPTLD++FF LV+P  +  
Sbjct: 203  RGISYSCSLDLVPIVEPRPRIEVPYKILFKINHMVQNGTLFGPTLDEKFFRLVSPQYVRI 262

Query: 2667 DYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTISLDSGLVYIHRVQVTPT 2488
            DYIE A+E +   K + F PA WL  +Y+K+  S R P+  +ISLDSGLVY++RVQVTP+
Sbjct: 263  DYIECAIEEMYFSKSSFFNPANWLTEKYSKFKRSTRLPKSPSISLDSGLVYVYRVQVTPS 322

Query: 2487 KIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMDLIPRARSSDGEKHTGIY 2308
            K+YF GPEVNVSNRVLR FS+DIENFIR+SFVDE+W+KM S DL  R+ S+  EKHT +Y
Sbjct: 323  KVYFYGPEVNVSNRVLRHFSEDIENFIRVSFVDEDWEKMHSTDLSSRSGSAGNEKHTALY 382

Query: 2307 KRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELTAADIRRWMGDFSEIKNV 2128
            +R LS LR GI IG K F+FLAFSSSQLRENS+WMFAS   LTAA IR+WMGDF EI+NV
Sbjct: 383  RRTLSVLRNGITIGGKNFKFLAFSSSQLRENSSWMFASNGRLTAAAIRKWMGDFHEIRNV 442

Query: 2127 AKYAARLGQSFGSSKETLTVKKHEIDFIPDIETESQKYNFSDGIGKISANFARRVALKCD 1948
            AKYAARLGQSF SS ETLTV KH++D IPD+     KY FSDGIGKISA F+RRVA+KC 
Sbjct: 443  AKYAARLGQSFSSSTETLTVDKHDVDDIPDV--RDGKYVFSDGIGKISAEFSRRVAIKCG 500

Query: 1947 L-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKSENMKLDVLSWSKYQPCYLN 1771
            L SSTPSAFQIRYGGYKGVVA+DP S  KLSLR+SM KYKS+N KLDVL++SKYQPC+LN
Sbjct: 501  LKSSTPSAFQIRYGGYKGVVAVDPTSSKKLSLRESMRKYKSDNTKLDVLAYSKYQPCFLN 560

Query: 1770 RQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEALEMMSPGENNRVLKEMLLC 1591
            RQLITLLSTLGV D  FE KQ+EAV++LD MLTD  RA EA+E+MSPGE   VLKE+LLC
Sbjct: 561  RQLITLLSTLGVGDWIFEMKQEEAVNELDKMLTDPDRAWEAIELMSPGETTSVLKELLLC 620

Query: 1590 GYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMGCLDETRTLEYGQVFVNISS 1411
            GYKPD+EPF+SM LQTFRA++L EL+ K+RIFI KGR+MMGCLDETRTLEYGQVFV +S 
Sbjct: 621  GYKPDSEPFISMLLQTFRAARLLELKNKSRIFIQKGRAMMGCLDETRTLEYGQVFVQVSC 680

Query: 1410 AGRKQFFDDGLDMFCGNRLD-ESVVLVGKVFVAKNPCLHPGDVRVLQAVNVPALHHMVDC 1234
             GR QF ++GL M+ G+  D  + VL GKV +AKNPCLHPGD+RVL AV+VP LHHMVDC
Sbjct: 681  TGRMQFHNNGLFMYGGSESDHHTAVLKGKVVIAKNPCLHPGDIRVLSAVDVPELHHMVDC 740

Query: 1233 VLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPMEYVPAAAEILDHDVRIEE 1054
            V+FPQKG+RPHPNECSGSDLDGDIYFVSWD DLIP R V PM+Y  A +EILDHDV IEE
Sbjct: 741  VVFPQKGKRPHPNECSGSDLDGDIYFVSWDADLIPPRVVTPMDYTSAPSEILDHDVTIEE 800

Query: 1053 VEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAKLFSIAVDFPKTGVPAEIP 874
            V EYFTNY+VNDSLG+IANAHTVFADK+P  AES+ CTELA+LFSIAVDFPKTGVPAEIP
Sbjct: 801  VMEYFTNYIVNDSLGIIANAHTVFADKKPLKAESEECTELARLFSIAVDFPKTGVPAEIP 860

Query: 873  SHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGHIQSFTREVARKSYDPDME 694
            +HLHVKE PDFMEK DK  YESK VIGKL+RAIKD   T G I++FT+E+ARKSYDPDME
Sbjct: 861  THLHVKEYPDFMEKLDKVTYESKGVIGKLYRAIKD--HTWGQIKAFTKEMARKSYDPDME 918

Query: 693  VDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSILKMSKSFSKRNDAEAISL 514
            VDGFE+Y+++A  FK +YD KLGNL+++YGIKTE E+LSGSI+KMSK+F+K  D EAI L
Sbjct: 919  VDGFEEYLDEAFLFKGEYDFKLGNLLEHYGIKTEAEILSGSIMKMSKNFTKYKDGEAIGL 978

Query: 513  AVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHPDYWGTYNEGMKRAHFLSF 334
            AVRSL+KE R WFNEK  + D + +DD YAKASAWYHVTYHPDYWG YNEG+ R HFLSF
Sbjct: 979  AVRSLRKEARAWFNEK--RIDCEDEDDVYAKASAWYHVTYHPDYWGCYNEGLNRPHFLSF 1036

Query: 333  PWIVYDKLIHIKQKKMRMKKVAE-MASLQYSFGRSLRL 223
            PW VYDKL  IK+K M M+K    + SLQ+    SLR+
Sbjct: 1037 PWCVYDKLTIIKKKTMSMRKAKTILFSLQHKMETSLRM 1074


>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058682|ref|XP_011075688.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058684|ref|XP_011075689.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
          Length = 1115

 Score = 1435 bits (3714), Expect = 0.0
 Identities = 726/1134 (64%), Positives = 871/1134 (76%), Gaps = 3/1134 (0%)
 Frame = -2

Query: 3618 RTIKILGFPATVSADDVKGFLENHIGEEGTVIALKVRPPKNVGPRSRAFVIVQFTTSRFA 3439
            +TI++ GFP  ++AD VK FLE   G+ GT++AL+V+P K  GPR  A+  VQFT SR+A
Sbjct: 3    KTIQVYGFPYLIAADVVKNFLEQQTGQ-GTIVALEVKPSKK-GPR--AYAKVQFTHSRYA 58

Query: 3438 EEITSKAEQKLLYYGFTYLTVKDGERDIIPKPRSTLLNLEHTVLHIGCQVSDDKFSTLWN 3259
            E I + A  +L YYG +YL V + + DI+  PR+ +  +E   L+ GCQ S +KFS LW 
Sbjct: 59   EMIQNLASTRL-YYGTSYLRVWESDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVLWK 117

Query: 3258 AADVEVNFGFGLRKLSFFLSHQGLEYKLELFYESIWQIQLRCPRKRSKKFLLIQVQAAPR 3079
             A V V FG G++K+ F L H  +EYKL+L YE+IWQI L  P  ++ K LLIQ+  APR
Sbjct: 118  VASVSVKFGTGMKKMHFLLCHNSVEYKLQLSYENIWQIVLYHPHGQTAKLLLIQLFGAPR 177

Query: 3078 IYKKAAPSYNNIFDSPFLNYFRDTQDDQWIRAVDFTPLCCIGQSSTLCLQVPYHQKLPDI 2899
            IYKK + S          +YF +TQDDQWIR  DFTP  CIGQ+S LCL++PY  +LP+ 
Sbjct: 178  IYKKVSES--------IYSYFSETQDDQWIRTTDFTP-SCIGQASGLCLELPYGMRLPNF 228

Query: 2898 RENFIYYKENEGQFILEGGSSFCRRLDLVPIVEPCQRIRLPYKILFKVNSLVQNGIIMGP 2719
            +++F+YY ++E  F LE G+ F   LDLVPI+ P +   LPY+ILFKV SLVQ G + GP
Sbjct: 229  QDHFVYYSKSENPFHLERGAPFSHNLDLVPILHPPRGFELPYRILFKVCSLVQTGCLPGP 288

Query: 2718 TLDDEFFNLVNPCSIDNDYIEHALEILSNLKETCFEPARWLRRQYNKYAMSLRRPRLSTI 2539
             LD  FF LVNP  I+  Y+EHALE L  LKE C++P  WL  QY KY  +  +P    I
Sbjct: 289  KLDARFFQLVNPQRINTKYVEHALEKLYYLKECCYDPTTWLMEQYEKYRTAKEQPTSPVI 348

Query: 2538 SLDSGLVYIHRVQVTPTKIYFCGPEVNVSNRVLREFSDDIENFIRISFVDEEWDKMRSMD 2359
            SL  GLVY+HRVQVTPTK+YF GPEVNVSNRVLR +SD I+NF+R+SFVDEEWDKM S D
Sbjct: 349  SLGDGLVYVHRVQVTPTKVYFSGPEVNVSNRVLRHYSDYIDNFLRVSFVDEEWDKMYSTD 408

Query: 2358 LIPRARSSDGEKHTGIYKRILSTLRTGIVIGEKKFEFLAFSSSQLRENSAWMFASRSELT 2179
            L PR  S+D    T +Y+RIL TLR GI IG K FEFLAFSSSQLR+NS WMFA  + L 
Sbjct: 409  LSPRVASADENGKTKLYERILKTLREGIRIGNKNFEFLAFSSSQLRDNSLWMFAPTNNLN 468

Query: 2178 AADIRRWMGDFSEIKNVAKYAARLGQSFGSSKETLTVKKHEIDFIPDIETE--SQKYNFS 2005
            A  IR+WMGDF  I+NVAKYAARLGQSFGSS ETL+V +HEI+ IPDIE      KY FS
Sbjct: 469  AHYIRQWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGQHEIERIPDIEAVRGGTKYIFS 528

Query: 2004 DGIGKISANFARRVALKCDL-SSTPSAFQIRYGGYKGVVAIDPESRFKLSLRKSMCKYKS 1828
            DGIGKISA FARRVA++C + +STPSAFQIRYGGYKGVVA+DP S  KLSLR SM KY+S
Sbjct: 529  DGIGKISAEFARRVAVRCGVKNSTPSAFQIRYGGYKGVVAVDPTSSVKLSLRSSMLKYQS 588

Query: 1827 ENMKLDVLSWSKYQPCYLNRQLITLLSTLGVKDNAFERKQQEAVDQLDMMLTDSIRAQEA 1648
            EN KLDVL+WSKYQPC+LNRQ+ITLLSTLGVKD+AFERKQ+EAV QLD +L D +RAQEA
Sbjct: 589  ENTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHAFERKQREAVAQLDDILVDPLRAQEA 648

Query: 1647 LEMMSPGENNRVLKEMLLCGYKPDAEPFLSMTLQTFRASKLFELRTKTRIFIPKGRSMMG 1468
            L++M+PGEN  +LKEML CGYKPD EPFLSM LQTFRASKL +LR K RIF+P+GR MMG
Sbjct: 649  LDLMAPGENTNILKEMLKCGYKPDGEPFLSMMLQTFRASKLLDLRLKARIFVPQGRQMMG 708

Query: 1467 CLDETRTLEYGQVFVNISSAGRKQFFDDGLDMFCGNRLDESVVLVGKVFVAKNPCLHPGD 1288
            CLDET TLEYG+VFV  S A R+QF ++ + MF     + + ++ GKV VAKNPCLHPGD
Sbjct: 709  CLDETGTLEYGEVFVQFSGALRRQFNEESI-MFNDYMSEYNYIVKGKVVVAKNPCLHPGD 767

Query: 1287 VRVLQAVNVPALHHMVDCVLFPQKGRRPHPNECSGSDLDGDIYFVSWDPDLIPSRQVPPM 1108
            VRVL+AV+V ALHHMVDCV+FP+KG RPHPNECSGSDLDGDIYFV WDPDLIP RQV PM
Sbjct: 768  VRVLKAVDVEALHHMVDCVVFPKKGMRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVSPM 827

Query: 1107 EYVPAAAEILDHDVRIEEVEEYFTNYMVNDSLGVIANAHTVFADKEPRMAESDYCTELAK 928
            +Y PA    LDHDV IEEVEEYFTNY+VNDSLG+I+NAHTVFADKE  MA S+ C ELA+
Sbjct: 828  DYDPAPTTGLDHDVTIEEVEEYFTNYIVNDSLGIISNAHTVFADKEESMALSESCLELAR 887

Query: 927  LFSIAVDFPKTGVPAEIPSHLHVKECPDFMEKPDKPNYESKRVIGKLFRAIKDMAPTTGH 748
            LFSIAVDFPKTGVPAEIPSHL VKE PDFM+KPDK  YESKRVIGKL+R +KD+AP T  
Sbjct: 888  LFSIAVDFPKTGVPAEIPSHLRVKEYPDFMDKPDKTAYESKRVIGKLYREVKDIAPHTTS 947

Query: 747  IQSFTREVARKSYDPDMEVDGFEDYIEDAVWFKDQYDLKLGNLMDYYGIKTEPEVLSGSI 568
             +SFT+EVAR+SYDPDMEVDGF+DYI++A  +K +YD KLGNLM+YYGIKTE E+LSG I
Sbjct: 948  SKSFTKEVARRSYDPDMEVDGFKDYIDEAFDYKTEYDYKLGNLMEYYGIKTEAEILSGGI 1007

Query: 567  LKMSKSFSKRNDAEAISLAVRSLKKEVRGWFNEKGSQTDPDIDDDAYAKASAWYHVTYHP 388
            +K SK+F +R DAEAI +AVRSL+ E R WF +KGS++     DD YAKASAWYHVTYHP
Sbjct: 1008 MKTSKTFDRRKDAEAIGVAVRSLRNEARSWF-KKGSES-----DDPYAKASAWYHVTYHP 1061

Query: 387  DYWGTYNEGMKRAHFLSFPWIVYDKLIHIKQKKMRMKKVAEMASLQYSFGRSLR 226
            D+WG+YNEG+KR H++SFPW VYDKLI IK+   R  +   ++SL++  G  LR
Sbjct: 1062 DFWGSYNEGLKRDHYISFPWCVYDKLIKIKEDNSR--RAPGISSLEWQLGNRLR 1113