BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00006329
         (3647 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III s...  1788   0.0  
ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III s...  1783   0.0  
ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III s...  1778   0.0  
ref|XP_010905752.1| PREDICTED: DNA-directed RNA polymerase III s...  1759   0.0  
ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theob...  1753   0.0  
ref|XP_009758465.1| PREDICTED: DNA-directed RNA polymerase III s...  1751   0.0  
ref|XP_009385728.1| PREDICTED: DNA-directed RNA polymerase III s...  1751   0.0  
ref|XP_009604369.1| PREDICTED: DNA-directed RNA polymerase III s...  1749   0.0  
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1745   0.0  
ref|XP_010312066.1| PREDICTED: DNA-directed RNA polymerase III s...  1740   0.0  
ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theob...  1740   0.0  
ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III s...  1739   0.0  
ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III s...  1735   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1735   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1732   0.0  
ref|XP_004141655.2| PREDICTED: DNA-directed RNA polymerase III s...  1731   0.0  
ref|XP_008462447.1| PREDICTED: DNA-directed RNA polymerase III s...  1727   0.0  
ref|XP_012459628.1| PREDICTED: DNA-directed RNA polymerase III s...  1724   0.0  
gb|KJB75029.1| hypothetical protein B456_012G019600 [Gossypium r...  1718   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1711   0.0  

>ref|XP_010242622.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2
            [Nelumbo nucifera]
          Length = 1140

 Score = 1788 bits (4631), Expect = 0.0
 Identities = 888/1133 (78%), Positives = 994/1133 (87%), Gaps = 11/1133 (0%)
 Frame = -2

Query: 3472 LAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINPKI 3293
            +A+PVKSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N RI +  +P  
Sbjct: 14   IASPVKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVEA--NNRITASSDPNF 71

Query: 3292 YLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRG--NPIQTEIKKG 3119
            YLK+ D+ + +PS+  D++ + L P  CRLSD+TYAAP+ V+IEY +   + I  E K+ 
Sbjct: 72   YLKYTDVKIGTPSITADNVTDTLTPHICRLSDMTYAAPIMVNIEYVKKFCDQITIEKKEN 131

Query: 3118 HVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNRII 2939
             VIG MPIMLRS  CVLY  D+ ELARLGECPLDPGGYF+VKGTEKV++IQEQLSKNRII
Sbjct: 132  VVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRII 191

Query: 2938 IDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESDQE 2759
            IDTDKKG ++ASVTSST   KSKT+I+M+K +IYL+LN F K IPIMV+MKAMGMESDQE
Sbjct: 192  IDTDKKGCLNASVTSSTEATKSKTIILMDKGKIYLRLNAFVKDIPIMVVMKAMGMESDQE 251

Query: 2758 VVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFTNQKVSP----MTI 2591
            VVQMVGRDP+Y  LLLPSIQECA   IYTQ QALEFLEKKV K  F+N  +      M  
Sbjct: 252  VVQMVGRDPKYGALLLPSIQECAGHGIYTQQQALEFLEKKVKKFSFSNPALEKEGRAMDT 311

Query: 2590 LDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLISL 2411
            L +VF+ANVPV Q +F PKCIYV VM+RRM+EA LN D +DDKDYVGNKRLELSGQLISL
Sbjct: 312  LRNVFIANVPVRQNNFRPKCIYVAVMMRRMMEAFLNKDAMDDKDYVGNKRLELSGQLISL 371

Query: 2410 LFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDVKRFK 2231
            LFEDLFKTM+S A+KS+D  L K +RS  +DI+ ++ KD IT+GLERAISTGNWD+KRF+
Sbjct: 372  LFEDLFKTMNSEARKSVDLQLAKVNRSVPVDIARYIVKDSITYGLERAISTGNWDLKRFR 431

Query: 2230 MNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 2051
            M+RKGMTQV++RLSFIA LGHMT+I PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC
Sbjct: 432  MHRKGMTQVLARLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 491

Query: 2050 GLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILGKHR 1871
            GLVKNLALMTHVTTD+EE PLI+LC+SLGVED+ LLSAEE+H+ NSYLV+FNGLILGKHR
Sbjct: 492  GLVKNLALMTHVTTDDEEGPLISLCHSLGVEDLELLSAEEIHTPNSYLVIFNGLILGKHR 551

Query: 1870 QPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIKEHH 1691
            QP++FAN +RKLRR+GKIGEFVSV+VNE+QRCVY+ASDGGRVCRPLVIADKGVSRIKEHH
Sbjct: 552  QPKQFANALRKLRRSGKIGEFVSVYVNERQRCVYIASDGGRVCRPLVIADKGVSRIKEHH 611

Query: 1690 MKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGVCAG 1511
            MKEL DG R F+DFLREGLIEYLDVNEENNALIALYEGEA+ +TTHIEIEPFTILGVCAG
Sbjct: 612  MKELMDGVRSFNDFLREGLIEYLDVNEENNALIALYEGEAEPETTHIEIEPFTILGVCAG 671

Query: 1510 LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIELVGY 1331
            LIPYPHHNQSPRNTYQCAMGKQAMGN+AYNQLCRMDTLLYLLVYPQRPLLTT++IELVGY
Sbjct: 672  LIPYPHHNQSPRNTYQCAMGKQAMGNVAYNQLCRMDTLLYLLVYPQRPLLTTRTIELVGY 731

Query: 1330 DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY-----DRI 1166
            DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK+SA+ Q Y     DRI
Sbjct: 732  DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKLSAINQRYPNDTSDRI 791

Query: 1165 IMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLPDSA 986
            I PQK           +ILD DGIA+PGEI+RP DI INK++   +RD+  S   LPDSA
Sbjct: 792  IRPQKVRSNA-----EKILDADGIAAPGEIIRPHDIYINKETPVNTRDKFTSPTGLPDSA 846

Query: 985  YKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKGVCG 806
            YK T   +KG +GET VVDRVAL +DKD N+ IKF+IRHTRRPEVGDKFSSRHGQKGVCG
Sbjct: 847  YKSTRQTYKGPQGETAVVDRVALCSDKDNNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCG 906

Query: 805  TIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFGEPS 626
            TI+QQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFH+GSAFGEPS
Sbjct: 907  TIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGEPS 966

Query: 625  GHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKMHAR 446
            GHAD+VE ISETLVRHGFSY+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DKMHAR
Sbjct: 967  GHADKVEAISETLVRHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHAR 1026

Query: 445  ARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVCRKC 266
            ARGPR+MLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLM+SSDPF+ QVCR C
Sbjct: 1027 ARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRVC 1086

Query: 265  GLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            GLLGYY+H LKTG CS CKSG+++S MKLPYACKLLFQELQ+MN+VPRL+LTE
Sbjct: 1087 GLLGYYNHKLKTGICSTCKSGDHISKMKLPYACKLLFQELQSMNVVPRLKLTE 1139


>ref|XP_010242621.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X1
            [Nelumbo nucifera]
          Length = 1142

 Score = 1783 bits (4618), Expect = 0.0
 Identities = 888/1135 (78%), Positives = 994/1135 (87%), Gaps = 13/1135 (1%)
 Frame = -2

Query: 3472 LAAPVKSAVDKYQLLPEFLK--VRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            +A+PVKSAVDK+QLLPEFLK  VRGLVKQHLDSFNYF+N  IKKI+ A  N RI +  +P
Sbjct: 14   IASPVKSAVDKFQLLPEFLKLQVRGLVKQHLDSFNYFVNIGIKKIVEA--NNRITASSDP 71

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRG--NPIQTEIK 3125
              YLK+ D+ + +PS+  D++ + L P  CRLSD+TYAAP+ V+IEY +   + I  E K
Sbjct: 72   NFYLKYTDVKIGTPSITADNVTDTLTPHICRLSDMTYAAPIMVNIEYVKKFCDQITIEKK 131

Query: 3124 KGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
            +  VIG MPIMLRS  CVLY  D+ ELARLGECPLDPGGYF+VKGTEKV++IQEQLSKNR
Sbjct: 132  ENVVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNR 191

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIIDTDKKG ++ASVTSST   KSKT+I+M+K +IYL+LN F K IPIMV+MKAMGMESD
Sbjct: 192  IIIDTDKKGCLNASVTSSTEATKSKTIILMDKGKIYLRLNAFVKDIPIMVVMKAMGMESD 251

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFTNQKVSP----M 2597
            QEVVQMVGRDP+Y  LLLPSIQECA   IYTQ QALEFLEKKV K  F+N  +      M
Sbjct: 252  QEVVQMVGRDPKYGALLLPSIQECAGHGIYTQQQALEFLEKKVKKFSFSNPALEKEGRAM 311

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
              L +VF+ANVPV Q +F PKCIYV VM+RRM+EA LN D +DDKDYVGNKRLELSGQLI
Sbjct: 312  DTLRNVFIANVPVRQNNFRPKCIYVAVMMRRMMEAFLNKDAMDDKDYVGNKRLELSGQLI 371

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDVKR 2237
            SLLFEDLFKTM+S A+KS+D  L K +RS  +DI+ ++ KD IT+GLERAISTGNWD+KR
Sbjct: 372  SLLFEDLFKTMNSEARKSVDLQLAKVNRSVPVDIARYIVKDSITYGLERAISTGNWDLKR 431

Query: 2236 FKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 2057
            F+M+RKGMTQV++RLSFIA LGHMT+I PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 432  FRMHRKGMTQVLARLSFIATLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 491

Query: 2056 ACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILGK 1877
            ACGLVKNLALMTHVTTD+EE PLI+LC+SLGVED+ LLSAEE+H+ NSYLV+FNGLILGK
Sbjct: 492  ACGLVKNLALMTHVTTDDEEGPLISLCHSLGVEDLELLSAEEIHTPNSYLVIFNGLILGK 551

Query: 1876 HRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIKE 1697
            HRQP++FAN +RKLRR+GKIGEFVSV+VNE+QRCVY+ASDGGRVCRPLVIADKGVSRIKE
Sbjct: 552  HRQPKQFANALRKLRRSGKIGEFVSVYVNERQRCVYIASDGGRVCRPLVIADKGVSRIKE 611

Query: 1696 HHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGVC 1517
            HHMKEL DG R F+DFLREGLIEYLDVNEENNALIALYEGEA+ +TTHIEIEPFTILGVC
Sbjct: 612  HHMKELMDGVRSFNDFLREGLIEYLDVNEENNALIALYEGEAEPETTHIEIEPFTILGVC 671

Query: 1516 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIELV 1337
            AGLIPYPHHNQSPRNTYQCAMGKQAMGN+AYNQLCRMDTLLYLLVYPQRPLLTT++IELV
Sbjct: 672  AGLIPYPHHNQSPRNTYQCAMGKQAMGNVAYNQLCRMDTLLYLLVYPQRPLLTTRTIELV 731

Query: 1336 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY-----D 1172
            GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK+SA+ Q Y     D
Sbjct: 732  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKLSAINQRYPNDTSD 791

Query: 1171 RIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLPD 992
            RII PQK           +ILD DGIA+PGEI+RP DI INK++   +RD+  S   LPD
Sbjct: 792  RIIRPQKVRSNA-----EKILDADGIAAPGEIIRPHDIYINKETPVNTRDKFTSPTGLPD 846

Query: 991  SAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKGV 812
            SAYK T   +KG +GET VVDRVAL +DKD N+ IKF+IRHTRRPEVGDKFSSRHGQKGV
Sbjct: 847  SAYKSTRQTYKGPQGETAVVDRVALCSDKDNNLCIKFLIRHTRRPEVGDKFSSRHGQKGV 906

Query: 811  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFGE 632
            CGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFH+GSAFGE
Sbjct: 907  CGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHYGSAFGE 966

Query: 631  PSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKMH 452
            PSGHAD+VE ISETLVRHGFSY+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DKMH
Sbjct: 967  PSGHADKVEAISETLVRHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1026

Query: 451  ARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVCR 272
            ARARGPR+MLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLM+SSDPF+ QVCR
Sbjct: 1027 ARARGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCR 1086

Query: 271  KCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
             CGLLGYY+H LKTG CS CKSG+++S MKLPYACKLLFQELQ+MN+VPRL+LTE
Sbjct: 1087 VCGLLGYYNHKLKTGICSTCKSGDHISKMKLPYACKLLFQELQSMNVVPRLKLTE 1141


>ref|XP_010659064.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera] gi|731414225|ref|XP_010659065.1| PREDICTED:
            DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1157

 Score = 1778 bits (4606), Expect = 0.0
 Identities = 892/1158 (77%), Positives = 998/1158 (86%), Gaps = 13/1158 (1%)
 Frame = -2

Query: 3541 KTMAVPDEDDTSKRIPSRMSMKSL--AAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYF 3368
            K  +V ++ D  KR    MS+     A PVK AVDK+ LLPEFLKVRGLVKQHLDSFNYF
Sbjct: 4    KEESVEEKLDHIKRKQEEMSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYF 63

Query: 3367 INCEIKKIIHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTY 3188
            +  +IKKI+ A  N+RIVS ++P IYL+F D+ +  PS+  D I E L P  CRLSD+TY
Sbjct: 64   VKTDIKKIVRA--NDRIVSSVDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTY 121

Query: 3187 AAPVKVDIEYTRGNPIQ-TEIKKGHV-IGNMPIMLRSRRCVLYRLDDDELARLGECPLDP 3014
            AAP+ V+IEY  G+ +Q T ++K  V IG MPIMLRS  CVLY+ D+ ELARLGECPLDP
Sbjct: 122  AAPILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDP 181

Query: 3013 GGYFIVKGTEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYL 2834
            GGYF+VKGTEKV++IQEQLSKNRIIIDTDKKG ++ASVTSST   KSKTVIVMEKE+I+L
Sbjct: 182  GGYFVVKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWL 241

Query: 2833 QLNQFTKLIPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALE 2654
            QLNQFT  IPIM++MKAMGMESDQEVVQMVGR+PRYS LLLPS++ECAS  IYTQ QALE
Sbjct: 242  QLNQFTSKIPIMIVMKAMGMESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALE 301

Query: 2653 FLEKKVVKSRFTNQKVSP----MTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAIL 2486
            FLE+KV K  F N  +      M IL D F+ANVPV Q +F PKC+YV VMLRRM++AIL
Sbjct: 302  FLERKVKKLPFYNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAIL 361

Query: 2485 NADTIDDKDYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLH 2306
            N D +DDKDYVGNKRLELSGQLISLLFEDLFKTM S  KK+ID  L K SRSS  D S  
Sbjct: 362  NKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQF 421

Query: 2305 LKKDWITHGLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKV 2126
            + +D IT GLER +STGNWDVKRF+M+RKGM+QVV+RLS+I +LGHMT+I PQFEKSRKV
Sbjct: 422  IVRDSITVGLERTLSTGNWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKV 481

Query: 2125 SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSL 1946
            SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLI+LCYSLGVED+ L
Sbjct: 482  SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLEL 541

Query: 1945 LSAEELHSVNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYL 1766
            LS EELH+ NS+L++FNGLILGKHR+PQRFAN +RKLRRAGKIGEFVSVFVNEKQ CVY+
Sbjct: 542  LSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYI 601

Query: 1765 ASDGGRVCRPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIAL 1586
            ASDGGRVCRP+VIADKG SRIKEHHMKEL DG R FDDFLR+GLIEYLDVNEENNALIAL
Sbjct: 602  ASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIAL 661

Query: 1585 YEGEADSKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRM 1406
            YE +A  +TTHIEIEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCRM
Sbjct: 662  YEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRM 721

Query: 1405 DTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 1226
            D+LLYLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG
Sbjct: 722  DSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRG 781

Query: 1225 FGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLD 1061
            FGRCIVMKK SAV Q Y     DRI+ P K    G     MQILD DG+A+PGEI++P D
Sbjct: 782  FGRCIVMKKFSAVNQRYENNASDRIVRPLK---VGHDAERMQILDDDGLAAPGEIIKPND 838

Query: 1060 ILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKF 881
            I INK+S  +++  LIS   LPDSAYK +    KG EGE +VVDRVAL +DK+ N+ IKF
Sbjct: 839  IYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKF 898

Query: 880  MIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKM 701
            +IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKM
Sbjct: 899  LIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKM 958

Query: 700  IELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPL 521
            IELLGGKAGVSCGRFH+GSAFGEPSGHAD+VE IS+TLV+HGFSYSGKDFIYSGITGCPL
Sbjct: 959  IELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPL 1018

Query: 520  QAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAY 341
            QAYIFMGPIYYQKLKHMV+DKMHAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAY
Sbjct: 1019 QAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAY 1078

Query: 340  GASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKL 161
            GASMLIFERLM+SSDPF+ QVCR CGLLGYY+H LK G CS CK+G+N+STMKLPYACKL
Sbjct: 1079 GASMLIFERLMVSSDPFEVQVCRVCGLLGYYNHKLKIGICSTCKNGDNISTMKLPYACKL 1138

Query: 160  LFQELQAMNIVPRLQLTE 107
            LFQELQAMN+VPRL+LTE
Sbjct: 1139 LFQELQAMNVVPRLKLTE 1156


>ref|XP_010905752.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Elaeis
            guineensis]
          Length = 1149

 Score = 1759 bits (4555), Expect = 0.0
 Identities = 892/1162 (76%), Positives = 997/1162 (85%), Gaps = 24/1162 (2%)
 Frame = -2

Query: 3520 EDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKII 3341
            EDD S       S+K L APVKSAVDK+QLLP FLKVRGLVKQH+DSFNYFIN +IKKI+
Sbjct: 4    EDDPSA------SLKILTAPVKSAVDKFQLLPAFLKVRGLVKQHIDSFNYFINHDIKKIM 57

Query: 3340 HAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIE 3161
             A  N+R+V   +P +YL++ +IYVE PSV+ D   E L P  CRLSD TYAAP+KVDIE
Sbjct: 58   KA--NDRLVCRYDPDLYLRYTNIYVEEPSVDMDFSVEKLTPHLCRLSDRTYAAPIKVDIE 115

Query: 3160 YTRGNPI--QTEIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGT 2987
            YT+GN    + EIK+G VIG +PIMLRS RCVL   D+ ELA+LGECPLDPGGYFIVKGT
Sbjct: 116  YTKGNQANKKPEIKRGLVIGRLPIMLRSCRCVLSGKDEAELAKLGECPLDPGGYFIVKGT 175

Query: 2986 EKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLI 2807
            EKV++IQEQLSKNRIIIDTD KGRV+ASVTSSTHE KSKTV  MEK++IYLQLNQF K I
Sbjct: 176  EKVILIQEQLSKNRIIIDTDSKGRVTASVTSSTHETKSKTVFFMEKDKIYLQLNQFIKPI 235

Query: 2806 PIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKS 2627
            PIMVIM+AMGMESDQE+VQMVGRDPRY  LLLPS+QECASERIYTQ QALE+L+ KV  +
Sbjct: 236  PIMVIMRAMGMESDQEIVQMVGRDPRYGTLLLPSLQECASERIYTQQQALEYLDGKVGNA 295

Query: 2626 ---RFTNQKVS-PMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKD 2459
               R  N+K      IL DVFLANVPV+QG+F PKCIY  VMLRRM++AILN DT DDKD
Sbjct: 296  NSARSGNRKEGLAKAILLDVFLANVPVNQGNFKPKCIYASVMLRRMMDAILNTDTFDDKD 355

Query: 2458 YVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHG 2279
            YVGNKRLELSGQLISLLFEDLFK+M+S A + ++ A   ASRSS +D + ++K+D+IT+G
Sbjct: 356  YVGNKRLELSGQLISLLFEDLFKSMNSFALELLNRAYEHASRSSPLDFAHYIKQDYITNG 415

Query: 2278 LERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPS 2099
            LE++I+TGNWDVKRFKM+RKG++QV+SRLSFI ALG MTRI PQFEK+RKVSGPRALQPS
Sbjct: 416  LEKSIATGNWDVKRFKMHRKGVSQVLSRLSFIGALGSMTRISPQFEKTRKVSGPRALQPS 475

Query: 2098 QWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSV 1919
            QWGMLCPCDTPEGEACGL KNLALMTHVTTDEEE PLI+LC+SLGVED++ LSAEELH+ 
Sbjct: 476  QWGMLCPCDTPEGEACGLTKNLALMTHVTTDEEEGPLISLCHSLGVEDLAFLSAEELHAP 535

Query: 1918 NSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCR 1739
             S+LV+FNGLILGKHRQPQRFAN MRKLRR+GKIGEFVS+FVNEKQRCVY+ASDGGRVCR
Sbjct: 536  GSFLVIFNGLILGKHRQPQRFANAMRKLRRSGKIGEFVSIFVNEKQRCVYVASDGGRVCR 595

Query: 1738 PLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEAD--- 1568
            PLVIADKG+SRIKEHHMKELRDG R FDDFLR+GL+EYLDVNEENNALIALYE E D   
Sbjct: 596  PLVIADKGISRIKEHHMKELRDGVRSFDDFLRDGLVEYLDVNEENNALIALYEYENDKDD 655

Query: 1567 ----------SKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ 1418
                      S  THIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNI YNQ
Sbjct: 656  SEKDNDDVKRSSITHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIGYNQ 715

Query: 1417 LCRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 1238
            L R DTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS
Sbjct: 716  LSRADTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSS 775

Query: 1237 LDRGFGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIV 1073
            LDRGFGRC+ MKK + VK+ Y     D II P +      + S+MQILD DGIA+PGEIV
Sbjct: 776  LDRGFGRCVAMKKYTVVKETYNNGTSDAIIGPNREK----VGSNMQILDDDGIAAPGEIV 831

Query: 1072 RPLDILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNM 893
            R  D+L+NK +   +RD     +   D  YK  P K+KG EGETTV+DRV L +D +  +
Sbjct: 832  RNHDVLVNKFTPRNTRD-----RGSRDIDYKEAPSKYKGPEGETTVIDRVILSSDTNDKL 886

Query: 892  VIKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 713
             IKF++RHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT
Sbjct: 887  SIKFIVRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 946

Query: 712  IGKMIELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGIT 533
            +GKMIELLGGKAGVSCGRFH+GSAFGEPSGHAD+VE IS TLV+HGFSYSGKDFIYSGIT
Sbjct: 947  VGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVEDISYTLVKHGFSYSGKDFIYSGIT 1006

Query: 532  GCPLQAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDC 353
            G PLQAYIFMGPIYYQKLKHMV+DKMHARA+GPR+MLTRQPTEGRSRDGGLRLGEMERDC
Sbjct: 1007 GYPLQAYIFMGPIYYQKLKHMVLDKMHARAKGPRVMLTRQPTEGRSRDGGLRLGEMERDC 1066

Query: 352  LIAYGASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPY 173
            LIAYGASM+IFERLM+SSDP+Q QVCR+CGLLGYY+H LK  FCSMCK+G+N+STMKLPY
Sbjct: 1067 LIAYGASMMIFERLMLSSDPYQVQVCRQCGLLGYYNHKLKAAFCSMCKNGDNISTMKLPY 1126

Query: 172  ACKLLFQELQAMNIVPRLQLTE 107
            ACKLLFQELQ+MN+VPRLQLTE
Sbjct: 1127 ACKLLFQELQSMNVVPRLQLTE 1148


>ref|XP_007010799.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508727712|gb|EOY19609.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1753 bits (4539), Expect = 0.0
 Identities = 877/1136 (77%), Positives = 987/1136 (86%), Gaps = 12/1136 (1%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + LAAP+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N+RIVS ++P
Sbjct: 27   QKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRA--NDRIVSGVDP 84

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ-TEIKK 3122
             IYL+F D+ +  PS+  + + E + P  CRLSD+TYAAP+ V+IEY +G+  Q T ++K
Sbjct: 85   SIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEK 144

Query: 3121 GH-VIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
               VIG MPIMLRS  CVLY  D+ ELARLGECPLDPGGYF++KG EKV++IQEQLSKNR
Sbjct: 145  NDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNR 204

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIID DKKG ++ASVTSS+   KSKTVI MEKE+IYL LNQF K IPIMV+MKAMGMESD
Sbjct: 205  IIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESD 264

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFTN----QKVSPM 2597
            QEVVQMVGRDP Y+ +LLPSI+ECA   IYTQ QALE+LE KV +  +T     ++   +
Sbjct: 265  QEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRAL 324

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
            +IL DVFLANVPV   +F PKC+YV VMLRRM+EAILN D +DDKDYVGNKRLELSGQLI
Sbjct: 325  SILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLI 384

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLK-KDWITHGLERAISTGNWDVK 2240
            SLLFEDLFKT  S  +K ID  L+K SRSS++D S  L+ ++ IT GLER +STGN+D+K
Sbjct: 385  SLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIK 444

Query: 2239 RFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2060
            RFKM+RKGMTQV++RLSFI  LG+MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 445  RFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 504

Query: 2059 EACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILG 1880
            EACGLVKNLALMTHVTTDE+E PLI+LCY LGVED+ LLS EELH+ NS+LV+ NGLILG
Sbjct: 505  EACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILG 564

Query: 1879 KHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIK 1700
            KHR+PQ FA  MRKLRRAGK+GEFVSVFVNEKQRCVY+ASDGGRVCRPLVIADKGVSRIK
Sbjct: 565  KHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK 624

Query: 1699 EHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGV 1520
            EHHMKEL DG R FDDFLR+GLIEYLDVNEENNALIALYEGEA  +TTHIEIEPFTILGV
Sbjct: 625  EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGV 684

Query: 1519 CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIEL 1340
            CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT++IEL
Sbjct: 685  CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIEL 744

Query: 1339 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY----- 1175
            VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SAV Q Y     
Sbjct: 745  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGAS 804

Query: 1174 DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLP 995
            DRI+ PQ++   G     MQILD DGIA+PGEI+RP DI INK+S+  +R   +S + LP
Sbjct: 805  DRILRPQRT---GPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLP 861

Query: 994  DSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKG 815
            DSAY+     +KG EGE+ VVDRVAL TD++ N+ IKF+IRHTRRPEVGDKFSSRHGQKG
Sbjct: 862  DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKG 921

Query: 814  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFG 635
            VCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFG
Sbjct: 922  VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 981

Query: 634  EPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKM 455
            EPSGHADRVE ISETL++HGFSY+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DKM
Sbjct: 982  EPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1041

Query: 454  HARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVC 275
            HAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLMISSDPF+ QVC
Sbjct: 1042 HARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVC 1101

Query: 274  RKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            RKCGLLGYY H LKTG CS CK+G+NVSTMKLPYACKLL QELQ+MNIVPRL+L+E
Sbjct: 1102 RKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1157


>ref|XP_009758465.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
            sylvestris] gi|698523320|ref|XP_009758466.1| PREDICTED:
            DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
            sylvestris]
          Length = 1155

 Score = 1751 bits (4535), Expect = 0.0
 Identities = 869/1161 (74%), Positives = 992/1161 (85%), Gaps = 13/1161 (1%)
 Frame = -2

Query: 3550 GANKTMAVPDEDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNY 3371
            G + TM+ P  D     +   +  + LA+P+K+ VDKYQL+PEFLKVRGLVKQHLDSFNY
Sbjct: 4    GDDSTMSNPTND-----LSHGIDKQYLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNY 58

Query: 3370 FINCEIKKIIHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVT 3191
            F+  EIKKI+ A  N+ I S ++P IYLK+ D+++  PS+  D + E L PQ+CRL D+T
Sbjct: 59   FVKTEIKKIVQA--NKEIRSILDPNIYLKYNDVHIGEPSIMVDGVTEKLNPQKCRLCDIT 116

Query: 3190 YAAPVKVDIEYTRGN--PIQTEIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLD 3017
            YAAP+ VDIEYT G+   I  + KK   IG MP+MLRS  CVLY  D++ELA+LGECPLD
Sbjct: 117  YAAPIYVDIEYTTGSHGQISVQTKKNVTIGRMPVMLRSCCCVLYGKDEEELAKLGECPLD 176

Query: 3016 PGGYFIVKGTEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIY 2837
            PGGYF++KGTEKV++IQEQLSKNRIIIDTDKKG V ASVTSST + KSKT++ MEKE++Y
Sbjct: 177  PGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVTSSTEKTKSKTIVKMEKEKVY 236

Query: 2836 LQLNQFTKLIPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQAL 2657
            L+LN F   +PIM++MKAMGMESDQEVVQM+GRDPR+S LLLPSI+ECA  ++YTQ QAL
Sbjct: 237  LELNMFKTKVPIMIVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKVYTQQQAL 296

Query: 2656 EFLEKKVVKSRFT------NQKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLE 2495
            EFLE   +   F+       +    ++IL D+FLANVPVH+ +F  KCIYV VM+RRM+E
Sbjct: 297  EFLESDKMLKMFSYSAGPVEKGARALSILRDIFLANVPVHKHNFRKKCIYVAVMMRRMME 356

Query: 2494 AILNADTIDDKDYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDI 2315
            AILN D +DDKDYVGNKRLELSGQL+SLLFEDLFKTM+  A+K++D  L + SRSS +DI
Sbjct: 357  AILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARKTVDALLARPSRSSRLDI 416

Query: 2314 SLHLKKDWITHGLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKS 2135
            S ++ KD IT G+ER +STGNWDVKRF+M+RKGMTQVV+RLS+I +LGHMT+I PQFEKS
Sbjct: 417  SPYIAKDSITVGMERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKS 476

Query: 2134 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVED 1955
            RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+I+LCY LGVED
Sbjct: 477  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEQPIISLCYCLGVED 536

Query: 1954 MSLLSAEELHSVNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRC 1775
            +  LSAEELH  +SYL++ NGLILGKHR PQRFAN MRKLRRAGKIGEF+S+FVNEKQR 
Sbjct: 537  LEQLSAEELHMPSSYLIILNGLILGKHRSPQRFANAMRKLRRAGKIGEFISIFVNEKQRS 596

Query: 1774 VYLASDGGRVCRPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNAL 1595
            VY+ASDGGRVCRPLVIADKGVSRIKE HMKELRDG R FD FLR+GLIEYLDVNEENN+L
Sbjct: 597  VYIASDGGRVCRPLVIADKGVSRIKEQHMKELRDGVRNFDSFLRDGLIEYLDVNEENNSL 656

Query: 1594 IALYEGEADSKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1415
            IALYE EA  +TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 657  IALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 716

Query: 1414 CRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1235
             RMDTL+YLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL
Sbjct: 717  SRMDTLIYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 776

Query: 1234 DRGFGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVR 1070
            DRGFGRCIVMKK SA    Y     DRII PQ+   +G     MQILD DG+ASPGEI+R
Sbjct: 777  DRGFGRCIVMKKYSATCLKYENNTSDRIIKPQR---QGYEAERMQILDEDGLASPGEIIR 833

Query: 1069 PLDILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMV 890
            P DI INK+S TV+R  + S   LPDSAYK +   +KG EGET VVDRVAL +DK+ N+ 
Sbjct: 834  PHDIYINKESPTVTRTPVSSPMSLPDSAYKPSRQTYKGPEGETPVVDRVALHSDKNNNLC 893

Query: 889  IKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTI 710
            IKFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+
Sbjct: 894  IKFMIRHTRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 953

Query: 709  GKMIELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITG 530
            GKMIELLG KAGVSCGRFH+GSAFGEPSGHAD V+ ISETLV+HGFSY+GKDFIYSGITG
Sbjct: 954  GKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDTISETLVKHGFSYNGKDFIYSGITG 1013

Query: 529  CPLQAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCL 350
             PLQAYIFMGPIYYQKLKHMV+DKMHAR  GPR+M+TRQPTEGRSR+GGLR+GEMERDCL
Sbjct: 1014 MPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCL 1073

Query: 349  IAYGASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYA 170
            IAYGASMLI+ERLMISSDPF+ QVCRKCGLLGYY++ LKTG CSMCK+GEN+STMKLPYA
Sbjct: 1074 IAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYA 1133

Query: 169  CKLLFQELQAMNIVPRLQLTE 107
            CKLL QELQ+MNIVPRL+L+E
Sbjct: 1134 CKLLIQELQSMNIVPRLKLSE 1154


>ref|XP_009385728.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Musa
            acuminata subsp. malaccensis]
          Length = 1152

 Score = 1751 bits (4534), Expect = 0.0
 Identities = 884/1147 (77%), Positives = 990/1147 (86%), Gaps = 21/1147 (1%)
 Frame = -2

Query: 3484 SMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDI 3305
            S KSLAAPVKSAVDK+QLLP FL+VRGLVKQH+DSFNYFIN +IKKI+ A  N+ +V   
Sbjct: 11   STKSLAAPVKSAVDKFQLLPAFLRVRGLVKQHIDSFNYFINHDIKKIMKA--NDLLVCRH 68

Query: 3304 NPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGN-PIQT-E 3131
            +P  YL++ +I V  PSV+ D   E L P  CRLSD TYAAP+KVDIEYT+GN P +T E
Sbjct: 69   DPTFYLRYTNIEVGEPSVDVDFSIEKLTPHLCRLSDRTYAAPIKVDIEYTKGNQPNKTPE 128

Query: 3130 IKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSK 2951
            +K+G VIG MPIMLRS RC L   D+ EL++LGECPLDPGGYF+VKGTEKV++IQEQLSK
Sbjct: 129  VKRGLVIGRMPIMLRSCRCALSGKDEAELSKLGECPLDPGGYFVVKGTEKVILIQEQLSK 188

Query: 2950 NRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGME 2771
            NRIIIDTD KGRV+ASVTSSTHE KSKTV  M+K++IYLQLNQF+K IPIMVIMKAMGME
Sbjct: 189  NRIIIDTDSKGRVTASVTSSTHETKSKTVFFMDKDKIYLQLNQFSKPIPIMVIMKAMGME 248

Query: 2770 SDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKS---RFTNQKVS- 2603
            SDQE+VQMVGRDPRY GLLLPSIQECASERIYTQ QAL++L+ KV  S   R  N+K   
Sbjct: 249  SDQEIVQMVGRDPRYGGLLLPSIQECASERIYTQQQALDYLDGKVGSSNSARAGNRKEGL 308

Query: 2602 PMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQ 2423
               IL DVFLANVPV +G+F P+CIY  VMLRRML+AILN DT DDKDYVGNKRLELSGQ
Sbjct: 309  AKAILLDVFLANVPVFRGNFRPRCIYAAVMLRRMLDAILNTDTFDDKDYVGNKRLELSGQ 368

Query: 2422 LISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDV 2243
            L+SLLFEDLFK+M++ A + ++ A   ASRSS +D   ++K+D+ITHGLE+AISTGNWD+
Sbjct: 369  LVSLLFEDLFKSMNAFALELVNRAYEHASRSSPLDFIHYIKQDFITHGLEKAISTGNWDL 428

Query: 2242 KRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 2063
            KRFKM+RKG++QVVSRLS+IAALGHMTRI PQFEK+RKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 429  KRFKMHRKGVSQVVSRLSYIAALGHMTRISPQFEKTRKVSGPRALQPSQWGMLCPCDTPE 488

Query: 2062 GEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLIL 1883
            GE CGL KNLALMTHVTTDEEE PLI+LC+SLGVED+ L S EELH++ S+LV+FNGLIL
Sbjct: 489  GEGCGLTKNLALMTHVTTDEEEGPLISLCHSLGVEDLGLQSGEELHALRSFLVIFNGLIL 548

Query: 1882 GKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRI 1703
            GKHRQPQRFA+ MRKLRR GKIGEFVS+FVNEKQ CVY+ASDGGRVCRPLVIADKG+SRI
Sbjct: 549  GKHRQPQRFASAMRKLRRCGKIGEFVSIFVNEKQHCVYVASDGGRVCRPLVIADKGISRI 608

Query: 1702 KEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYE-------GEADSKT---TH 1553
            KEHHMKELRDG R FDDFLR+GL+EYLDVNEENNALIALYE        E D K    TH
Sbjct: 609  KEHHMKELRDGVRTFDDFLRDGLVEYLDVNEENNALIALYECVNDMDDSEDDIKKSCITH 668

Query: 1552 IEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQ 1373
            IEIEP T+LGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQLCR DTLLYLLVYPQ
Sbjct: 669  IEIEPLTLLGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRADTLLYLLVYPQ 728

Query: 1372 RPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVS 1193
            RPLLTTK+IEL+GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI MKK S
Sbjct: 729  RPLLTTKTIELIGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYS 788

Query: 1192 AVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVS 1028
             +K+ Y     DRI+ P+K       +  MQILD DGIA+PGEI+R  DI +NK++   +
Sbjct: 789  VLKEIYGNGTSDRIVRPRKDKD----NQRMQILDGDGIAAPGEIIRNNDIYVNKETPINT 844

Query: 1027 RDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVG 848
            RD+      L D  YK TP  +KG EGETTV+DRV L +D +  + IKF+IRHTRRPEVG
Sbjct: 845  RDKTGGPMGLKDEDYKRTPAVYKGPEGETTVIDRVILCSDTNDKLCIKFIIRHTRRPEVG 904

Query: 847  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVS 668
            DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVS
Sbjct: 905  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVS 964

Query: 667  CGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYY 488
            CGRFH+GSAFGEPSG+AD+VE IS TLV+HGFSYSGKDFIYSGITG PLQAYIFMGPIYY
Sbjct: 965  CGRFHYGSAFGEPSGNADKVEDISYTLVKHGFSYSGKDFIYSGITGYPLQAYIFMGPIYY 1024

Query: 487  QKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLM 308
            QKLKHMV+DKMHARA GPR+MLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLM
Sbjct: 1025 QKLKHMVLDKMHARASGPRVMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLM 1084

Query: 307  ISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIV 128
            +SSDP+Q QVCRKCGLLGYY++ LKT FCSMCK+GEN+STMKLPYACKLLFQELQ+MN+V
Sbjct: 1085 LSSDPYQVQVCRKCGLLGYYNYKLKTAFCSMCKNGENISTMKLPYACKLLFQELQSMNVV 1144

Query: 127  PRLQLTE 107
            PRL+L E
Sbjct: 1145 PRLKLVE 1151


>ref|XP_009604369.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Nicotiana
            tomentosiformis]
          Length = 1155

 Score = 1749 bits (4529), Expect = 0.0
 Identities = 871/1161 (75%), Positives = 993/1161 (85%), Gaps = 13/1161 (1%)
 Frame = -2

Query: 3550 GANKTMAVPDEDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNY 3371
            G + TM+ P  D     +   +  + LA+P+K+ VDKYQL+PEFLKVRGLVKQHLDSFNY
Sbjct: 4    GDDSTMSNPTND-----LSHGIDKQYLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNY 58

Query: 3370 FINCEIKKIIHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVT 3191
            F+  EIKKI+ A  N+ I S ++P IYLK+ D+++  PS+  D + E L PQ+CRL D+T
Sbjct: 59   FVKTEIKKIVQA--NKEIRSILDPNIYLKYNDVHIGEPSIMVDGVTEKLNPQKCRLCDLT 116

Query: 3190 YAAPVKVDIEYTRGN--PIQTEIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLD 3017
            YAAP+ VDIEYT G+   I  + KK   IG MP+MLRS  CVLY  D++ELA+LGECPLD
Sbjct: 117  YAAPIYVDIEYTTGSHGQISVQTKKNVTIGRMPVMLRSCCCVLYGKDEEELAKLGECPLD 176

Query: 3016 PGGYFIVKGTEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIY 2837
            PGGYF++KGTEKV++IQEQLSKNRIIIDTDKKG V ASVTSST + KSKT++ MEKE++Y
Sbjct: 177  PGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGCVQASVTSSTEKTKSKTIVKMEKEKVY 236

Query: 2836 LQLNQFTKLIPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQAL 2657
            L+LN F   +PIM++MKAMGMESDQEVVQM+GRDPR+S LLLPSI+ECA  ++YTQ+QAL
Sbjct: 237  LELNMFKTKVPIMIVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKVYTQHQAL 296

Query: 2656 EFLE--KKVVKSRFTNQKVSP----MTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLE 2495
            EFLE  K +  S ++   V      ++IL D+FLANVPVHQ +F  KCIYV VM+RRM+E
Sbjct: 297  EFLESDKMLKMSSYSAGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMME 356

Query: 2494 AILNADTIDDKDYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDI 2315
            AILN D +DDKDYVGNKRLELSGQL+SLLFEDLFKTM+  A+K++D  L + SRSS +DI
Sbjct: 357  AILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARKTVDALLARPSRSSRLDI 416

Query: 2314 SLHLKKDWITHGLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKS 2135
            S  + KD IT G+ER +STGNWDVKRF+M+RKGMTQVV+RLS+I +LGHMT+I PQFEKS
Sbjct: 417  SPFIAKDSITVGMERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKS 476

Query: 2134 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVED 1955
            RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+I+LCY LGVED
Sbjct: 477  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEDEHPIISLCYCLGVED 536

Query: 1954 MSLLSAEELHSVNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRC 1775
            +  LSAEELH  +SYL++ NGLILGKHR PQRFAN MRKLRRAGKIGEF+S+FVNEKQR 
Sbjct: 537  LEQLSAEELHMPSSYLIILNGLILGKHRSPQRFANAMRKLRRAGKIGEFISIFVNEKQRS 596

Query: 1774 VYLASDGGRVCRPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNAL 1595
            VY+ASDGGRVCRPLVIADKGVSRIKE HMKELRDG R FD FL++GLIEYLDVNEENN+L
Sbjct: 597  VYIASDGGRVCRPLVIADKGVSRIKEQHMKELRDGVRNFDSFLKDGLIEYLDVNEENNSL 656

Query: 1594 IALYEGEADSKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1415
            IALYE EA  +TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 657  IALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 716

Query: 1414 CRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1235
             RMDTL+YLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL
Sbjct: 717  SRMDTLIYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 776

Query: 1234 DRGFGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVR 1070
            DRGFGRCIVMKK SA    Y     DRII PQ+   +G     MQILD DG+ASPGEI+R
Sbjct: 777  DRGFGRCIVMKKYSATCLKYENNTSDRIIKPQR---QGYEAERMQILDEDGLASPGEIIR 833

Query: 1069 PLDILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMV 890
            P DI INK+S TV+R  + S   LPDSAYK +   +KG EGET VVDRVAL +DK+ N+ 
Sbjct: 834  PHDIYINKESPTVTRTPVSSPMSLPDSAYKPSRQTYKGPEGETPVVDRVALHSDKNNNLC 893

Query: 889  IKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTI 710
            IKFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+
Sbjct: 894  IKFMIRHTRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 953

Query: 709  GKMIELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITG 530
            GKMIELLG KAGVSCGRFH+GSAFGEPSGHAD V+ ISETLV+HGFSY+GKDFIYSGITG
Sbjct: 954  GKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDTISETLVKHGFSYNGKDFIYSGITG 1013

Query: 529  CPLQAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCL 350
             PLQAYIFMGPIYYQKLKHMV+DKMHAR  GPR+M+TRQPTEGRSR+GGLR+GEMERDCL
Sbjct: 1014 MPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMITRQPTEGRSRNGGLRVGEMERDCL 1073

Query: 349  IAYGASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYA 170
            IAYGASMLI+ERLMISSDPF+ QVCRKCGLLGYY++ LKTG CSMCK+GEN+STMKLPYA
Sbjct: 1074 IAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYA 1133

Query: 169  CKLLFQELQAMNIVPRLQLTE 107
            CKLL QELQ+MNIVPRL+L E
Sbjct: 1134 CKLLIQELQSMNIVPRLKLAE 1154


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1745 bits (4519), Expect = 0.0
 Identities = 871/1161 (75%), Positives = 992/1161 (85%), Gaps = 13/1161 (1%)
 Frame = -2

Query: 3550 GANKTMAVPDEDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNY 3371
            G + TM+   ED         +  + LA+P+K+ VDKYQL+PEFLKVRGLVKQHLDSFNY
Sbjct: 2    GYDSTMSNTTEDSNQG-----IDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNY 56

Query: 3370 FINCEIKKIIHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVT 3191
            F+  EIKKI+ A  N+ I S ++P IYL++ D+++  PS+  D + E L PQ+CRLSD T
Sbjct: 57   FVRTEIKKIVRA--NQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRT 114

Query: 3190 YAAPVKVDIEYTRGNPIQTEI--KKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLD 3017
            YAAP+ V IEYT G+  QT +  KK  +IG MPIMLRS  CVLY  D+DELARLGECPLD
Sbjct: 115  YAAPIYVTIEYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLD 174

Query: 3016 PGGYFIVKGTEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIY 2837
            PGGYF++KGTEKV++IQEQLSKNRIIIDTDKKG V ASVTSST + KSKT+I MEKE++Y
Sbjct: 175  PGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVY 234

Query: 2836 LQLNQFTKLIPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQAL 2657
            L+LN F   +PIMV+MKAMGMESDQEVVQM+GRDPR+S LLLPSI+ECA  ++YTQ+QAL
Sbjct: 235  LELNMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQAL 294

Query: 2656 EFLEK-KVVKSRF-----TNQKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLE 2495
            EFLE  K++K          +    ++IL D+FLANVPVHQ +F  KCIYV VM+RRM+E
Sbjct: 295  EFLESDKMLKMPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMME 354

Query: 2494 AILNADTIDDKDYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDI 2315
            AILN D +DDKDYVGNKRLELSGQL+SLLFEDLFKTM+  A+++ID  L + SRSS +DI
Sbjct: 355  AILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDI 414

Query: 2314 SLHLKKDWITHGLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKS 2135
            S ++ KD IT GLER +STGNWDVKRF+M+RKGMTQVV+RLS+I +LGHMT+I PQFEKS
Sbjct: 415  SQYIVKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKS 474

Query: 2134 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVED 1955
            RKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+++LCY LGVED
Sbjct: 475  RKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVED 534

Query: 1954 MSLLSAEELHSVNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRC 1775
            +  LS EELH   SYL+  NGLILGKH+ PQRFAN MR+LRRAGKIGEFVS+FVNEKQRC
Sbjct: 535  LEQLSPEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRC 594

Query: 1774 VYLASDGGRVCRPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNAL 1595
            VY+ASDGGRVCRPLVIADKGVSRIKEHHM+ELRDG R FD FL++GLIEYLDVNEENN L
Sbjct: 595  VYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTL 654

Query: 1594 IALYEGEADSKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1415
            IALYE EA  +TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 655  IALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 714

Query: 1414 CRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1235
             RMD LLYLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL
Sbjct: 715  NRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 774

Query: 1234 DRGFGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVR 1070
            DRGFGRCIVMKK SA+ Q Y     DRII PQ+   +G     MQILD DG+A+PGE +R
Sbjct: 775  DRGFGRCIVMKKYSAICQKYENGTSDRIIKPQR---QGFEADKMQILDDDGMAAPGETIR 831

Query: 1069 PLDILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMV 890
              DI INK+S TV+R  + S   LPDSAYK +   +KG EGET VVDRVAL++D++ N+ 
Sbjct: 832  NHDIYINKESPTVTRTPITSPMGLPDSAYKTSRQTYKGPEGETAVVDRVALYSDRNNNLS 891

Query: 889  IKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTI 710
            IKFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+
Sbjct: 892  IKFMIRHTRRPEIGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 951

Query: 709  GKMIELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITG 530
            GKMIELLG KAGVSCGRFH+GSAFGEPSGHAD V+ ISETLV+HGFSY+GKDFIYSGITG
Sbjct: 952  GKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDSISETLVKHGFSYNGKDFIYSGITG 1011

Query: 529  CPLQAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCL 350
             PLQAYIFMGPIYYQKLKHMV+DKMHAR  GPR+M+TRQPTEGRSR+GGLR+GEMERDCL
Sbjct: 1012 MPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCL 1071

Query: 349  IAYGASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYA 170
            IAYGASMLI+ERLMISSDPF+ QVCRKCGLLGYY++ LKTG CSMCK+GEN+STMKLPYA
Sbjct: 1072 IAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYA 1131

Query: 169  CKLLFQELQAMNIVPRLQLTE 107
            CKLLFQELQ+MNIVPRL+L E
Sbjct: 1132 CKLLFQELQSMNIVPRLKLAE 1152


>ref|XP_010312066.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Solanum
            lycopersicum] gi|723738099|ref|XP_010312067.1| PREDICTED:
            DNA-directed RNA polymerase III subunit RPC2 [Solanum
            lycopersicum]
          Length = 1153

 Score = 1740 bits (4507), Expect = 0.0
 Identities = 869/1161 (74%), Positives = 991/1161 (85%), Gaps = 13/1161 (1%)
 Frame = -2

Query: 3550 GANKTMAVPDEDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNY 3371
            G + TM+   ED         +  + LA+ +K+ VDKYQL+PEFLKVRGLVKQHLDSFNY
Sbjct: 2    GYDSTMSNTTEDSNQG-----IDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNY 56

Query: 3370 FINCEIKKIIHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVT 3191
            F+  EIKKI+ A  N+ I S ++P IYL++ D+++  PS+  D + E L PQ+CRLSD T
Sbjct: 57   FVRTEIKKIVRA--NQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRT 114

Query: 3190 YAAPVKVDIEYTRGNPIQTEI--KKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLD 3017
            YAAP+ V I+YT G+  QT +  KK  +IG MPIMLRS  CVLY  D+DELARLGECPLD
Sbjct: 115  YAAPIYVTIDYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLD 174

Query: 3016 PGGYFIVKGTEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIY 2837
            PGGYF++KGTEKV++IQEQLSKNRIIIDTDKKG V ASVTSST + KSKT+I MEKE++Y
Sbjct: 175  PGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVY 234

Query: 2836 LQLNQFTKLIPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQAL 2657
            L+LN F   +PIMV+MKAMGMESDQEVVQM+GRDPR+S LLLPSI+ECA  ++YTQ QAL
Sbjct: 235  LELNMFKTKVPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQAL 294

Query: 2656 EFLEK-KVVKSRFTN-----QKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLE 2495
            EFLE  K++K    +     +    ++IL D+FLANVPVHQ +F  KCIYV VM+RRM+E
Sbjct: 295  EFLESDKMLKMPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMME 354

Query: 2494 AILNADTIDDKDYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDI 2315
            AILN D +DDKDYVGNKRLELSGQL+SLLFEDLFKTM+  A+++ID  L + SRSS +DI
Sbjct: 355  AILNKDAMDDKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDI 414

Query: 2314 SLHLKKDWITHGLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKS 2135
            S ++ KD IT GLER +STGNWDVKRF+M+RKGMTQVV+RLS+I +LGHMT+I PQFEKS
Sbjct: 415  SQYIIKDSITMGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKS 474

Query: 2134 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVED 1955
            RKVSGPRALQPSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E P+++LCY LGVED
Sbjct: 475  RKVSGPRALQPSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVED 534

Query: 1954 MSLLSAEELHSVNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRC 1775
            +  LS EELH   SYL+  NGLILGKH+ PQRFAN MR+LRRAGK+GEFVS+FVNEKQRC
Sbjct: 535  LEQLSPEELHMPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKVGEFVSIFVNEKQRC 594

Query: 1774 VYLASDGGRVCRPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNAL 1595
            VY+ASDGGRVCRPLVIADKGVSRIKEHHM+ELRDG R FD FL++GLIEYLDVNEENN L
Sbjct: 595  VYIASDGGRVCRPLVIADKGVSRIKEHHMRELRDGLRDFDSFLKDGLIEYLDVNEENNTL 654

Query: 1594 IALYEGEADSKTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 1415
            IALYE EA  +TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL
Sbjct: 655  IALYEKEATPETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL 714

Query: 1414 CRMDTLLYLLVYPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 1235
             RMD LLYLLVYPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL
Sbjct: 715  NRMDGLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 774

Query: 1234 DRGFGRCIVMKKVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVR 1070
            DRGFGRCIVMKK SA+ Q Y     DRII PQ+   +G     MQILD DG+A+PGE +R
Sbjct: 775  DRGFGRCIVMKKYSAICQKYENGTSDRIIKPQR---QGPEADRMQILDDDGMAAPGETIR 831

Query: 1069 PLDILINKQSATVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMV 890
              DI INK+S TV+R  + S   LPDSAYK +   +KG EGET VVDRVAL++D++ N+ 
Sbjct: 832  NHDIYINKESPTVTRTPVTSPMGLPDSAYKSSKQTYKGPEGETAVVDRVALYSDRNNNLS 891

Query: 889  IKFMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTI 710
            IKFMIRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+
Sbjct: 892  IKFMIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 951

Query: 709  GKMIELLGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITG 530
            GKMIELLG KAGVSCGRFH+GSAFGEPSGHAD V+ ISETLV+HGFSY+GKDFIYSGITG
Sbjct: 952  GKMIELLGSKAGVSCGRFHYGSAFGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITG 1011

Query: 529  CPLQAYIFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCL 350
             PLQAYIFMGPIYYQKLKHMVVDKMHAR  GPR+M+TRQPTEGRSR+GGLR+GEMERDCL
Sbjct: 1012 MPLQAYIFMGPIYYQKLKHMVVDKMHARGSGPRVMMTRQPTEGRSRNGGLRVGEMERDCL 1071

Query: 349  IAYGASMLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYA 170
            IAYGASMLI+ERLMISSDPF+ QVCRKCGLLGYY++ LKTG CSMCK+GEN+STMKLPYA
Sbjct: 1072 IAYGASMLIYERLMISSDPFEVQVCRKCGLLGYYNYKLKTGICSMCKNGENISTMKLPYA 1131

Query: 169  CKLLFQELQAMNIVPRLQLTE 107
            CKLLFQELQ+MNIVPRL+L E
Sbjct: 1132 CKLLFQELQSMNIVPRLKLAE 1152


>ref|XP_007010801.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508727714|gb|EOY19611.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1740 bits (4506), Expect = 0.0
 Identities = 874/1136 (76%), Positives = 982/1136 (86%), Gaps = 12/1136 (1%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + LAAP+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N+RIVS ++P
Sbjct: 27   QKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRA--NDRIVSGVDP 84

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ-TEIKK 3122
             IYL+F D+ +  PS+  + + E + P  CRLSD+TYAAP+ V+IEY +G+  Q T ++K
Sbjct: 85   SIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGSHGQKTRLEK 144

Query: 3121 GH-VIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
               VIG MPIMLRS  CVLY  D+ ELARLGECPLDPGGYF++KG EK     EQLSKNR
Sbjct: 145  NDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK-----EQLSKNR 199

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIID DKKG ++ASVTSS+   KSKTVI MEKE+IYL LNQF K IPIMV+MKAMGMESD
Sbjct: 200  IIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESD 259

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFTN----QKVSPM 2597
            QEVVQMVGRDP Y+ +LLPSI+ECA   IYTQ QALE+LE KV +  +T     ++   +
Sbjct: 260  QEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGPASEKEGRAL 319

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
            +IL DVFLANVPV   +F PKC+YV VMLRRM+EAILN D +DDKDYVGNKRLELSGQLI
Sbjct: 320  SILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNKRLELSGQLI 379

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLK-KDWITHGLERAISTGNWDVK 2240
            SLLFEDLFKT  S  +K ID  L+K SRSS++D S  L+ ++ IT GLER +STGN+D+K
Sbjct: 380  SLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERTLSTGNFDIK 439

Query: 2239 RFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2060
            RFKM+RKGMTQV++RLSFI  LG+MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 440  RFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 499

Query: 2059 EACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILG 1880
            EACGLVKNLALMTHVTTDE+E PLI+LCY LGVED+ LLS EELH+ NS+LV+ NGLILG
Sbjct: 500  EACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFLVILNGLILG 559

Query: 1879 KHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIK 1700
            KHR+PQ FA  MRKLRRAGK+GEFVSVFVNEKQRCVY+ASDGGRVCRPLVIADKGVSRIK
Sbjct: 560  KHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIK 619

Query: 1699 EHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGV 1520
            EHHMKEL DG R FDDFLR+GLIEYLDVNEENNALIALYEGEA  +TTHIEIEPFTILGV
Sbjct: 620  EHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGV 679

Query: 1519 CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIEL 1340
            CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT++IEL
Sbjct: 680  CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIEL 739

Query: 1339 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY----- 1175
            VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SAV Q Y     
Sbjct: 740  VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAVNQKYETGAS 799

Query: 1174 DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLP 995
            DRI+ PQ++   G     MQILD DGIA+PGEI+RP DI INK+S+  +R   +S + LP
Sbjct: 800  DRILRPQRT---GPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRVSSESLP 856

Query: 994  DSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKG 815
            DSAY+     +KG EGE+ VVDRVAL TD++ N+ IKF+IRHTRRPEVGDKFSSRHGQKG
Sbjct: 857  DSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSSRHGQKG 916

Query: 814  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFG 635
            VCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFG
Sbjct: 917  VCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 976

Query: 634  EPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKM 455
            EPSGHADRVE ISETL++HGFSY+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DKM
Sbjct: 977  EPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1036

Query: 454  HARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVC 275
            HAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLMISSDPF+ QVC
Sbjct: 1037 HARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVC 1096

Query: 274  RKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            RKCGLLGYY H LKTG CS CK+G+NVSTMKLPYACKLL QELQ+MNIVPRL+L+E
Sbjct: 1097 RKCGLLGYYSHKLKTGICSSCKNGDNVSTMKLPYACKLLIQELQSMNIVPRLKLSE 1152


>ref|XP_011085923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Sesamum
            indicum]
          Length = 1152

 Score = 1739 bits (4505), Expect = 0.0
 Identities = 864/1134 (76%), Positives = 984/1134 (86%), Gaps = 10/1134 (0%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            ++LAAPVK+AVDK+QLLPEFLKVRGLVKQHLDSFNYF+  +IKKI+ A  N+ I S I+P
Sbjct: 23   QALAAPVKNAVDKFQLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQA--NDLITSKIDP 80

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGN--PIQTEIK 3125
             IYL++ D+ +  PSV  D + E L P +CRLSD+TYAAP+ V+IEY  G+     T++K
Sbjct: 81   SIYLRYKDVRIGEPSVIIDGVTEKLTPHKCRLSDITYAAPIYVNIEYITGSHGSKTTQMK 140

Query: 3124 KGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
            +  +IG MPIMLRS  C+LY  D++ELAR GECPLDPGGYF++KGTEKV++IQEQLSKNR
Sbjct: 141  RDVIIGRMPIMLRSCCCILYGKDEEELARYGECPLDPGGYFVIKGTEKVILIQEQLSKNR 200

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIIDTDKKG V ASVTSST   KSKTVI MEKE+IYL LNQFT  +PIMV++KAMGMESD
Sbjct: 201  IIIDTDKKGCVQASVTSSTEMTKSKTVIRMEKEKIYLYLNQFTSKVPIMVVLKAMGMESD 260

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFT---NQKVSPMT 2594
            QEVVQM+GRDPRYS LLLPSI++C  E ++TQ+QALEFLE+KV K  ++   +++   + 
Sbjct: 261  QEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQHQALEFLEQKVKKLPYSTPADKEGRALG 320

Query: 2593 ILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLIS 2414
            IL D+FLAN+PV Q +F PKCIYV VM+RR+LEAILN D +DDKDYVGNKRLELSGQL+S
Sbjct: 321  ILRDIFLANIPVRQNNFRPKCIYVAVMVRRILEAILNKDAMDDKDYVGNKRLELSGQLLS 380

Query: 2413 LLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDVKRF 2234
            LLFEDLFKTM+  A+K+ID  L K SRSS  DIS  + KD IT GLER +STGNWDVKRF
Sbjct: 381  LLFEDLFKTMNDEARKTIDTILAKPSRSSRFDISQFIVKDSITVGLERTLSTGNWDVKRF 440

Query: 2233 KMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 2054
            +M+RKGMTQVV+RLS+I  LGHMT+I PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA
Sbjct: 441  RMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 500

Query: 2053 CGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILGKH 1874
            CGLVKNLALMTHVTTD++E PLI+LCYSLGVED+ LLS EELH  NSYL++ NGLILGKH
Sbjct: 501  CGLVKNLALMTHVTTDDDEGPLISLCYSLGVEDLELLSGEELHMPNSYLIILNGLILGKH 560

Query: 1873 RQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIKEH 1694
            R+PQRFA  MRKLRR+GKIGEFVS+FVNEKQ  VY+ASDGGRVCRPLVIADKGVSRIKEH
Sbjct: 561  RRPQRFAKAMRKLRRSGKIGEFVSIFVNEKQHSVYIASDGGRVCRPLVIADKGVSRIKEH 620

Query: 1693 HMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGVCA 1514
            HMKEL+DG R FD FL+EGLIEYLDVNEENNALIALYE  A+ +TTHIEIEPFTILG+ A
Sbjct: 621  HMKELKDGVRNFDSFLKEGLIEYLDVNEENNALIALYEENANERTTHIEIEPFTILGIIA 680

Query: 1513 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIELVG 1334
            GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTL+YLLVYPQRPLLTT++IELV 
Sbjct: 681  GLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLIYLLVYPQRPLLTTRTIELVR 740

Query: 1333 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY-----DR 1169
            +DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK++AV Q Y     DR
Sbjct: 741  FDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKMTAVSQKYENGTSDR 800

Query: 1168 IIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLPDS 989
            I+ P +   +G     MQILD DG+A+PGEI+RP DI INK+S  V+R  + S   LPDS
Sbjct: 801  ILRPPR---EGYEAERMQILDDDGLAAPGEIIRPHDIYINKESPIVTRGPVTSPMGLPDS 857

Query: 988  AYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKGVC 809
            AYK +   +KG +GET VVDRVAL +D++ N+ IKFMIRHTRRPE+GDKFSSRHGQKGVC
Sbjct: 858  AYKPSRQTYKGPDGETPVVDRVALCSDRNNNLCIKFMIRHTRRPELGDKFSSRHGQKGVC 917

Query: 808  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFGEP 629
            G IVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFGEP
Sbjct: 918  GNIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 977

Query: 628  SGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKMHA 449
            SGHAD+VE ISETLV+HGFSY+GKDFIYSGITG PLQAYIFMGPIYYQKLKHMV+DKMHA
Sbjct: 978  SGHADKVEAISETLVKHGFSYNGKDFIYSGITGEPLQAYIFMGPIYYQKLKHMVLDKMHA 1037

Query: 448  RARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVCRK 269
            R  GPR+M+TRQPTEGRSR+GGLR+GEMERDCLIAYGASMLI+ERLMISSDPF+ QVCRK
Sbjct: 1038 RGSGPRVMITRQPTEGRSRNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRK 1097

Query: 268  CGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            CGLLGYY+  LKTG CS CK+GEN+STMKLPYACKLL QELQAMNI+PRL+LTE
Sbjct: 1098 CGLLGYYNFKLKTGICSTCKNGENISTMKLPYACKLLIQELQAMNIIPRLKLTE 1151


>ref|XP_010043725.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2 [Eucalyptus
            grandis]
          Length = 1152

 Score = 1735 bits (4494), Expect = 0.0
 Identities = 870/1155 (75%), Positives = 984/1155 (85%), Gaps = 18/1155 (1%)
 Frame = -2

Query: 3517 DDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIH 3338
            +D   R  + +  + LAAP+KSAVDK+QL+PEFLKVRGLVKQHLDSFNYF N EIKKI+ 
Sbjct: 2    EDLRNRSHADVDYRKLAAPIKSAVDKFQLVPEFLKVRGLVKQHLDSFNYFANTEIKKIVR 61

Query: 3337 AKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEY 3158
            A  N++IVS ++P +Y++F D+ + +P+   + I E L PQ+CRL+D TYAAPV VD+EY
Sbjct: 62   A--NDKIVSSVDPNLYVRFKDVRIGNPTEALEGIVEDLSPQKCRLTDKTYAAPVLVDVEY 119

Query: 3157 TRGNPIQTEI--KKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTE 2984
            T+G+     +  K    I  MPIMLRS  CVL+R D+DELARLGECPLDPGGYF++KGTE
Sbjct: 120  TKGSHGGYSLLEKNDVTIARMPIMLRSCCCVLFRKDEDELARLGECPLDPGGYFVIKGTE 179

Query: 2983 KVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIP 2804
            KV++IQEQLSKNRIIIDTDKKG ++ASVTSST   KSKTV+VMEK ++YLQLNQF K IP
Sbjct: 180  KVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVVVMEKGKMYLQLNQFAKNIP 239

Query: 2803 IMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSR 2624
            IM++MKAM MESDQEVVQM+GRDPRYS LLL SI+ECAS  I+TQ QALEFLE K+ K  
Sbjct: 240  IMIVMKAMRMESDQEVVQMIGRDPRYSALLLQSIEECASLSIFTQQQALEFLEGKLKKLP 299

Query: 2623 FTNQKVSP----MTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDY 2456
            + N         M+IL DVFLANV V + +F PKCIYV VMLRRM+EAILN D +DDKDY
Sbjct: 300  YANMSTGKEGRAMSILRDVFLANVRVIKNNFRPKCIYVAVMLRRMMEAILNKDAMDDKDY 359

Query: 2455 VGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGL 2276
            VGNKRLELSGQLISLLFEDLFKTM S  +K  D  L+K SRSS +D+S+ L KD IT GL
Sbjct: 360  VGNKRLELSGQLISLLFEDLFKTMISEVQKQADNVLSKRSRSSQLDLSMLLVKDIITQGL 419

Query: 2275 ERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQ 2096
            ERA+STGNWDVKRF+M+RKGMTQV++RLSFI  LGH+TRI PQFEKSRKVSGPRALQPSQ
Sbjct: 420  ERALSTGNWDVKRFRMHRKGMTQVLARLSFIGTLGHVTRISPQFEKSRKVSGPRALQPSQ 479

Query: 2095 WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVN 1916
            WGMLCPCDTPEGEACGLVKNLALMTHVTTD+EE PLI LCY LGVED+ LLS EELH+ N
Sbjct: 480  WGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLIALCYCLGVEDLELLSGEELHTPN 539

Query: 1915 SYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRP 1736
            S+L++FNGLILGKHR+PQRFAN MRKLRR G+IGEFVSVFVNEKQ CVY+ASDGGRVCRP
Sbjct: 540  SFLIIFNGLILGKHRRPQRFANTMRKLRRIGRIGEFVSVFVNEKQCCVYIASDGGRVCRP 599

Query: 1735 LVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTT 1556
            LVIADKG+SRIKEHHMK L DGAR FDDFLREGL+EYLDVNEENNALIALYE +A  +TT
Sbjct: 600  LVIADKGISRIKEHHMKGLLDGARTFDDFLREGLVEYLDVNEENNALIALYEQDATPETT 659

Query: 1555 HIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYP 1376
            HIEIEPFTILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYP
Sbjct: 660  HIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLLRMDTLLYLLVYP 719

Query: 1375 QRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKV 1196
            QRPLLTT++IEL GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK 
Sbjct: 720  QRPLLTTRTIELTGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKY 779

Query: 1195 SAVKQAY-----DRIIMP-----QKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINK 1046
            SAV Q Y     DRI+ P     +   G+      MQILD DGIA+PGEI+RP D+ INK
Sbjct: 780  SAVNQKYENGTSDRILRPPRKDDRNKKGENPDWERMQILDNDGIAAPGEIIRPNDVYINK 839

Query: 1045 QSATVSRDQLISHKV--LPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIR 872
            +S  +++    + K+  L DS YK +    KG EGE+ VVDRV L +DK+ N+ IKFMIR
Sbjct: 840  ESPIITKG---NPKLGGLKDSDYKPSRQTFKGAEGESCVVDRVTLSSDKNYNLSIKFMIR 896

Query: 871  HTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIEL 692
            HTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSE GICPDLIMNPHGFPSRMT+GKMIEL
Sbjct: 897  HTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSEHGICPDLIMNPHGFPSRMTVGKMIEL 956

Query: 691  LGGKAGVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAY 512
            LGGKAGVSCGRFH+GSAFGEPSGHADRVE ISETLV+HGFSY+GKDF+YSGITGCPLQAY
Sbjct: 957  LGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLVKHGFSYNGKDFLYSGITGCPLQAY 1016

Query: 511  IFMGPIYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGAS 332
            IFMGPIYYQKLKHMV+DKMHAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGAS
Sbjct: 1017 IFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGAS 1076

Query: 331  MLIFERLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQ 152
            MLI+ERLM+SSDPF+ QVCR CGLLGYY++ LKTG CS CK+G+N+STMKLPYACKLL Q
Sbjct: 1077 MLIYERLMLSSDPFEVQVCRACGLLGYYNYKLKTGICSSCKNGDNISTMKLPYACKLLIQ 1136

Query: 151  ELQAMNIVPRLQLTE 107
            ELQ+MNIVPRL+L +
Sbjct: 1137 ELQSMNIVPRLRLAD 1151


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1735 bits (4493), Expect = 0.0
 Identities = 868/1150 (75%), Positives = 985/1150 (85%), Gaps = 11/1150 (0%)
 Frame = -2

Query: 3523 DEDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKI 3344
            +E    +++P +   + LAAPVKS VDK+QLLPEFLKVRGLVKQHLDSFNYF+N  I+KI
Sbjct: 7    EESPKDEQLPDK---QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKI 63

Query: 3343 IHAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDI 3164
            + A  N+RIVS I+P I+L+F D+ +  PS+  D + E L P  CRLSD+TYAAP+ V+I
Sbjct: 64   VRA--NDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNI 121

Query: 3163 EYTRGNPIQ--TEIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKG 2990
            EY +G+  +  T  K   VIG +PIMLRS RCVLY  D+ ELARLGECPLDPGGYFI+KG
Sbjct: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181

Query: 2989 TEKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKL 2810
            TEKVL+IQEQLSKNR+IIDTDKKG ++ASVTSST   KSKTVI MEK ++YL LNQF K 
Sbjct: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241

Query: 2809 IPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVK 2630
            IPIMV+MKAMGMESDQEVVQMVGRDPRYS LLLPSI+ECA+  IYTQ +ALE+LE KV +
Sbjct: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301

Query: 2629 SRF----TNQKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDK 2462
            S F     +++    +IL DVFLANVPVH  +F PKC YV VMLRRM+EA+LN D +DDK
Sbjct: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361

Query: 2461 DYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITH 2282
            DYVGNKRLELSGQL+SLLFEDLFKTM S  +K++D  L+K SRSS  D+S  + +D IT 
Sbjct: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITV 421

Query: 2281 GLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQP 2102
            GLER +STGN+DVKRFKM+RKGMTQV++RLSFI  LGHMTR+ PQFEKSRKVSGPRALQP
Sbjct: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481

Query: 2101 SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHS 1922
            SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE PLI+LCY LGVED+ LLS EELH+
Sbjct: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541

Query: 1921 VNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVC 1742
             NS+LV+FNGLILGKHR+P+ FA+ MRKLRRAGKIGEFVSVFVNEKQRCVY+ASDGGRVC
Sbjct: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601

Query: 1741 RPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSK 1562
            RPLVIADKG+SRIKEHHMKEL DG R FDDFLREGLIEYLDVNEENNALIALYEG+A   
Sbjct: 602  RPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661

Query: 1561 TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLV 1382
            TTHIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLV
Sbjct: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721

Query: 1381 YPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK 1202
            YPQRPLLTT++IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+K
Sbjct: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781

Query: 1201 KVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSA 1037
            K +A+ Q Y     DRI+ P ++   G     MQILD DG+A+PGEI++P D+ INK+S 
Sbjct: 782  KYTAINQKYANSTSDRILRPDRT---GPGSERMQILDDDGLAAPGEIIKPNDVYINKESP 838

Query: 1036 TVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRP 857
              +R  ++S     DS Y+     +KG +GET VVDRVAL +DK+ ++ IKF+IRHTRRP
Sbjct: 839  LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRP 898

Query: 856  EVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA 677
            E+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKA
Sbjct: 899  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958

Query: 676  GVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGP 497
            GVSCGRFH+GSAFGEPSGHAD VE ISETLV+HGFSY+GKD IYSGITGCPLQAYIFMGP
Sbjct: 959  GVSCGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGP 1018

Query: 496  IYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFE 317
            IYYQKLKHMV+DKMHAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFE
Sbjct: 1019 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFE 1078

Query: 316  RLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAM 137
            RLM+SSDPF+ QVCR CGLLGYY+H LK G CS CK+G N+S+MKLPYACKLL QELQ+M
Sbjct: 1079 RLMVSSDPFEVQVCRVCGLLGYYNHKLKAGICSTCKNGNNISSMKLPYACKLLIQELQSM 1138

Query: 136  NIVPRLQLTE 107
            NIVPRL+L E
Sbjct: 1139 NIVPRLKLAE 1148


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1732 bits (4486), Expect = 0.0
 Identities = 866/1135 (76%), Positives = 980/1135 (86%), Gaps = 11/1135 (0%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + LAAPVKS VDK+QLLPEFLKVRGLVKQHLDSFNYF+N  I+KI+ A  N+RIVS I+P
Sbjct: 19   QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDP 76

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ--TEIK 3125
             I+L+F D+ +  PS+  D + E L P  CRLSD+TYAAP+ V+IEY +G+  +  T  K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 3124 KGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
               VIG +PIMLRS RCVLY  D+ ELARLGECPLDPGGYFI+KGTEKVL+IQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            +IIDTDKKG ++ASVTSST   KSKTVI MEK ++YL LNQF K IPIMV+MKAMG+ESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRF----TNQKVSPM 2597
            QEVVQMVGRDPRYS LLLPSI+ECA+  IYTQ +ALE+LE KV +S F     +++    
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
            +IL DVFLANVPVH  +F PKC YV VMLRRM+EA+LN D +DDKDYVGNKRLELSGQL+
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDVKR 2237
            SLLFEDLFKTM S  +K++D  L+K SRSS  D+S  + +D IT GLER +STGN+DVKR
Sbjct: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436

Query: 2236 FKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 2057
            FKM+RKGMTQV++RLSFI  LGHMTR+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496

Query: 2056 ACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILGK 1877
            ACGLVKNLALMTHVTTDEEE PLI+LCY LGVED+ LLS EELH+ NS+LV+FNGLILGK
Sbjct: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556

Query: 1876 HRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIKE 1697
            HR+P+ FA+ MRKLRRAGKIGEFVSVFVNEKQRCVY+ASDGGRVCRPLVIADKG+SRIKE
Sbjct: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616

Query: 1696 HHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGVC 1517
            HHMKEL DG R FDDFLREGLIEYLDVNEENNALIALYEG+A   TTHIEIEPFTILGV 
Sbjct: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676

Query: 1516 AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIELV 1337
            AGLIPYPHHNQSPRNTYQCAMGKQAMGNIA+NQLCRMD+LLYLLVYPQRPLLTT++IELV
Sbjct: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736

Query: 1336 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY-----D 1172
            GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK +A+ Q Y     D
Sbjct: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796

Query: 1171 RIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLPD 992
            RI+ P + +G G     MQILD DG+A+PGEI++P D+ INK+S   +R  ++S     D
Sbjct: 797  RILRPDR-TGPGA--ERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTD 853

Query: 991  SAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKGV 812
            S Y+     +KG +GET VVDRVAL +DK+ ++ IKF+IRHTRRPE+GDKFSSRHGQKGV
Sbjct: 854  SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913

Query: 811  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFGE 632
            CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFGE
Sbjct: 914  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973

Query: 631  PSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKMH 452
            PSGHAD VE ISETLV+HGFSY+GKD IYSGITGCPLQAYIFMGPIYYQKLKHMV+DKMH
Sbjct: 974  PSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMH 1033

Query: 451  ARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVCR 272
            AR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLM+SSDPF+ QVCR
Sbjct: 1034 ARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCR 1093

Query: 271  KCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
             CGLLGYY+H LK G CS CK+G+N+S+MKLPYACKLL QELQ+MNIVPRL+L E
Sbjct: 1094 VCGLLGYYNHKLKAGICSTCKNGDNISSMKLPYACKLLIQELQSMNIVPRLKLAE 1148


>ref|XP_004141655.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis
            sativus]
          Length = 1158

 Score = 1731 bits (4483), Expect = 0.0
 Identities = 870/1148 (75%), Positives = 983/1148 (85%), Gaps = 12/1148 (1%)
 Frame = -2

Query: 3514 DTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHA 3335
            D S  I S +  + +  P+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N EIKKI+ A
Sbjct: 17   DNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKA 76

Query: 3334 KDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYT 3155
              N+RI S  +P IYL+FLD+ +  PSV  + + E + P  CRLSD+TYAAP+ VDIEY 
Sbjct: 77   --NDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYI 134

Query: 3154 RGNPIQT--EIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEK 2981
              +  Q     KK  VIG MPIMLRSR CVL+  D+ ELARLGECPLDPGGYFI+KGTEK
Sbjct: 135  EESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEK 194

Query: 2980 VLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTK-LIP 2804
            V++IQEQLSKNRIIIDTDKKG ++ASVTSST   KSKTVI ME E+IYLQLN FT   IP
Sbjct: 195  VVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIP 254

Query: 2803 IMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSR 2624
            IMV++KAMGMES QEVVQMVGRDPRY  LLLPSI+ECA E+IYTQ QALE+LE KV K +
Sbjct: 255  IMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQ 314

Query: 2623 FTN----QKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDY 2456
            F +    ++   + IL DVFLANVPV++ +F+PKCIYV VM+RRM++AIL+ D +DDKDY
Sbjct: 315  FASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDY 374

Query: 2455 VGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGL 2276
            VGNKRLELSGQLISLLFEDLFKTM S  KK+ID+ L K SRSS  D S HL  + I+ GL
Sbjct: 375  VGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGL 434

Query: 2275 ERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQ 2096
            ER +STGNWDVKRF+M+RKGM+QV++RLSFI+ +GH+TR+ PQFEKSRKVSGPRALQPSQ
Sbjct: 435  ERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQ 494

Query: 2095 WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVN 1916
            WGMLCPCDTPEGEACGLVKNLALMTHVTTD+EE PLI+LCY LGVED+ LLSAEELH+ N
Sbjct: 495  WGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPN 554

Query: 1915 SYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRP 1736
            S+LV+FNG ILGKHR+PQ FA GMR LRRAGKIGEFVSVFVNEKQ CVY+ASDGGRVCRP
Sbjct: 555  SFLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRP 614

Query: 1735 LVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTT 1556
            LVIADKGVSRIKE+HMKEL DG R FDDFLR+GLIEYLDVNEENNALIALYEGEA  +TT
Sbjct: 615  LVIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETT 674

Query: 1555 HIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYP 1376
            HIEIEPFTILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLVYP
Sbjct: 675  HIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYP 734

Query: 1375 QRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKV 1196
            QRPLLTTK+IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV KK 
Sbjct: 735  QRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKY 794

Query: 1195 SAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATV 1031
            S+V Q Y     DRI+ P ++    G   +MQILD DG+A+PGEI+RP DI +NKQS  +
Sbjct: 795  SSVNQKYENNTADRIVRPNRNEDFTG---NMQILDDDGLAAPGEIIRPNDIYVNKQSPII 851

Query: 1030 SRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEV 851
            ++   +    +PD+AY+      KG+EGE TVVDRVAL TDK+  + IKF+IR TRRPE+
Sbjct: 852  TKGSPLPG--IPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPEL 909

Query: 850  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGV 671
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGV
Sbjct: 910  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 969

Query: 670  SCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIY 491
            SCGRFH+GSAFGEPSGHAD+V+ ISETL++ GFSY+GKDF+YSGITGCPLQAYIFMGPIY
Sbjct: 970  SCGRFHYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIY 1029

Query: 490  YQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERL 311
            YQKLKHMV+DKMHAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLI+ERL
Sbjct: 1030 YQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERL 1089

Query: 310  MISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNI 131
            MISSDPF+ QVCR CGLLGYY+H LKTG CS CK+G+N+STMKLPYACKLL QELQ+MNI
Sbjct: 1090 MISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNI 1149

Query: 130  VPRLQLTE 107
            VPRL+L E
Sbjct: 1150 VPRLKLAE 1157


>ref|XP_008462447.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis
            melo]
          Length = 1158

 Score = 1727 bits (4474), Expect = 0.0
 Identities = 868/1150 (75%), Positives = 982/1150 (85%), Gaps = 12/1150 (1%)
 Frame = -2

Query: 3520 EDDTSKRIPSRMSMKSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKII 3341
            + D S  I S +  + +  P+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N EIKKI+
Sbjct: 15   QGDDSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIV 74

Query: 3340 HAKDNERIVSDINPKIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIE 3161
             A  N+RI S  +P IYL+FLD+ +  PSV  + + E + P  CRLSD+TYAAP+ VDIE
Sbjct: 75   KA--NDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIE 132

Query: 3160 YTRGNPIQT--EIKKGHVIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGT 2987
            Y   +  Q     KK  VIG MPIMLRSR CVL+  D+ ELARLGECPLDPGGYFI+KGT
Sbjct: 133  YIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGT 192

Query: 2986 EKVLMIQEQLSKNRIIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTK-L 2810
            EKV++IQEQLSKNRIIIDTDKKG ++ASVTSST   KSKTVI ME E+IYLQLN FT   
Sbjct: 193  EKVVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPK 252

Query: 2809 IPIMVIMKAMGMESDQEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVK 2630
            IPIMV++KAMGMES QEVVQMVGRDPRY  LLLPSI+ECA E+IYTQ QALE+LE KV K
Sbjct: 253  IPIMVVLKAMGMESVQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKK 312

Query: 2629 SRFTN----QKVSPMTILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDK 2462
             +F +    ++   + IL DVFLANVPV++ +F+PKCIYV VM+RRM++AIL+ D +DDK
Sbjct: 313  FQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDK 372

Query: 2461 DYVGNKRLELSGQLISLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITH 2282
            DYVGNKRLELSGQLISLLFEDLFKTM S  KK+ID+ L K SRSS  D S HL  + I+ 
Sbjct: 373  DYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISF 432

Query: 2281 GLERAISTGNWDVKRFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQP 2102
            GLER +STGNWDVKRF+M+RKGM+QV++RLSFI+ +GH+TR+ PQFEKSRKVSGPRALQP
Sbjct: 433  GLERTLSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQP 492

Query: 2101 SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHS 1922
            SQWGMLCPCDTPEGEACGLVKNLALMTHVTTD+EE PLI+LCY LGVED+ LLSAEELH+
Sbjct: 493  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHT 552

Query: 1921 VNSYLVMFNGLILGKHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVC 1742
             NS+LV+FNG ILGKHR+PQ FA GMR LRRAGKIGEFVSVFVNEKQ CVY+ASDGGRVC
Sbjct: 553  PNSFLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVC 612

Query: 1741 RPLVIADKGVSRIKEHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSK 1562
            RPLVIADKGVSRI+E+HMKEL DG R FDDFLR+GLIEYLDVNEENNALIALYEGEA  +
Sbjct: 613  RPLVIADKGVSRIREYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPE 672

Query: 1561 TTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLV 1382
            TTHIEIEP TILGV AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQL RMDTLLYLLV
Sbjct: 673  TTHIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLV 732

Query: 1381 YPQRPLLTTKSIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK 1202
            YPQRPLLTTK+IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV K
Sbjct: 733  YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFK 792

Query: 1201 KVSAVKQAY-----DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSA 1037
            K S+V Q Y     DRI+ P ++    G   +MQILD DG+A+PGEI+RP D+ +NKQS 
Sbjct: 793  KYSSVNQKYENNTADRIVRPNRNEDFTG---NMQILDDDGLAAPGEIIRPNDVYVNKQSP 849

Query: 1036 TVSRDQLISHKVLPDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRP 857
             +++   +    +PDSAY+      KG+EGE TVVDRVAL TDK+  + IKF+IR TRRP
Sbjct: 850  IITKGSPLPG--IPDSAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRP 907

Query: 856  EVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA 677
            E+GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKA
Sbjct: 908  ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 967

Query: 676  GVSCGRFHHGSAFGEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGP 497
            GVSCGRFH+GSAFGEPSGHAD+V+ ISETL+  GFSY+GKDF+YSGITGCPLQAYIFMGP
Sbjct: 968  GVSCGRFHYGSAFGEPSGHADKVDAISETLIERGFSYNGKDFLYSGITGCPLQAYIFMGP 1027

Query: 496  IYYQKLKHMVVDKMHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFE 317
            IYYQKLKHMV+DKMHAR  GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLI+E
Sbjct: 1028 IYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYE 1087

Query: 316  RLMISSDPFQAQVCRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAM 137
            RLMISSDPF+ QVCR CGLLGYY+H LKTG CS CK+G+N+STMKLPYACKLL QELQ+M
Sbjct: 1088 RLMISSDPFEVQVCRVCGLLGYYNHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSM 1147

Query: 136  NIVPRLQLTE 107
            NIVPRL+L E
Sbjct: 1148 NIVPRLKLAE 1157


>ref|XP_012459628.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gossypium
            raimondii] gi|763808128|gb|KJB75030.1| hypothetical
            protein B456_012G019600 [Gossypium raimondii]
          Length = 1158

 Score = 1724 bits (4464), Expect = 0.0
 Identities = 864/1136 (76%), Positives = 977/1136 (86%), Gaps = 12/1136 (1%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + LAAP+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N+RIVSDI+P
Sbjct: 26   QKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRA--NDRIVSDIDP 83

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ-TEIKK 3122
             IYL+F D+ +  PS+  D I E + P  CRLS++TYAAP+ V+IEY +G+  Q T ++K
Sbjct: 84   SIYLRFKDVRIGEPSMTVDGITEKINPHACRLSEMTYAAPILVNIEYIQGSHGQKTRLEK 143

Query: 3121 GH-VIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
               VIG MPIMLRS  CVL   D+ ELARLGECPLDPGGYF++KGTEKV++IQEQLSKNR
Sbjct: 144  NDLVIGRMPIMLRSCCCVLQGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 203

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIID DKKG ++ASVTSS+   KSKTVI MEKE+IYL LNQF K IPIMV+MKAMGMESD
Sbjct: 204  IIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESD 263

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVK----SRFTNQKVSPM 2597
            QEVVQM+GRDPR+S LLLPSI+ECA   IYT+ QAL +L+ K  +    S  ++Q     
Sbjct: 264  QEVVQMLGRDPRFSALLLPSIEECAGIGIYTKEQALAYLDTKAKRPLYASSASDQDGRAF 323

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
             IL DVF+ANVPV   +F PKC+YV VMLRRM+EAILN D +DDKDYVGNKRLELSGQLI
Sbjct: 324  CILRDVFIANVPVRCNNFRPKCLYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQLI 383

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKK-DWITHGLERAISTGNWDVK 2240
            SLLFEDLFKT  +  KKSID  L+K SRSS++D S  L++ ++IT GLER +STGN+D++
Sbjct: 384  SLLFEDLFKTTLAQVKKSIDSVLSKTSRSSALDPSQFLRRMEFITTGLERTLSTGNFDIQ 443

Query: 2239 RFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2060
            RF+M+RKGMTQV++RLSFI  LG MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 444  RFRMHRKGMTQVLARLSFIGTLGFMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 503

Query: 2059 EACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILG 1880
            EACGLVKNLALMTHVTTDE+E PL++LCY LGVED+ LLS EELH+ NS+LVM NGLILG
Sbjct: 504  EACGLVKNLALMTHVTTDEDEGPLVSLCYCLGVEDLELLSGEELHTPNSFLVMLNGLILG 563

Query: 1879 KHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIK 1700
            KHR+PQ FAN +RKLRRAGK+GEFVSVFVNEKQRCVY+ASDGGRVCRPLVIADKG+SRIK
Sbjct: 564  KHRRPQHFANALRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 623

Query: 1699 EHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGV 1520
            EHHMKEL DG R FDDFL +GLIEYLDVNEENNALIALYEGEA  +TTHIEIEPFTILGV
Sbjct: 624  EHHMKELLDGVRTFDDFLSDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGV 683

Query: 1519 CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIEL 1340
             AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT++IEL
Sbjct: 684  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIEL 743

Query: 1339 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY----- 1175
            VGYDKLGAGQNATVAV+SYSGYDIEDAIVMNKSSLDRGFGRCIVMKK S V Q Y     
Sbjct: 744  VGYDKLGAGQNATVAVISYSGYDIEDAIVMNKSSLDRGFGRCIVMKKSSNVIQKYENGAT 803

Query: 1174 DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLP 995
            DRI+ PQ++   G     M ILD DGIASPGEI+RP DIL+NK+    +R   +S   LP
Sbjct: 804  DRILRPQRT---GPGSEKMLILDDDGIASPGEIIRPNDILLNKEVPIHTRGTRVSSDSLP 860

Query: 994  DSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKG 815
            DSAYK     +KG EGE+ V+DRV+L TD++ N+ IKF+IRHTRRPE+GDKFSSRHGQKG
Sbjct: 861  DSAYKPVRQSYKGPEGESCVMDRVSLSTDRNGNLSIKFLIRHTRRPELGDKFSSRHGQKG 920

Query: 814  VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFG 635
            VCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFG
Sbjct: 921  VCGIIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 980

Query: 634  EPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKM 455
            EPSGHAD+VE ISETLV+HGF Y+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DKM
Sbjct: 981  EPSGHADKVETISETLVKHGFCYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKM 1040

Query: 454  HARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVC 275
            HAR  GPR+MLTRQPTEGR+R GGLR+GEMERDCLIAYGASMLIFERLM+SSDPF+ QVC
Sbjct: 1041 HARGNGPRVMLTRQPTEGRARKGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVC 1100

Query: 274  RKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            RKCGLLGYY H LKTG CS CK+G++VSTM+LPYACKLL QELQ+MNIVPRL+L E
Sbjct: 1101 RKCGLLGYYSHKLKTGICSSCKNGDDVSTMQLPYACKLLIQELQSMNIVPRLKLAE 1156


>gb|KJB75029.1| hypothetical protein B456_012G019600 [Gossypium raimondii]
          Length = 1159

 Score = 1718 bits (4449), Expect = 0.0
 Identities = 863/1137 (75%), Positives = 977/1137 (85%), Gaps = 13/1137 (1%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + LAAP+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N+RIVSDI+P
Sbjct: 26   QKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRA--NDRIVSDIDP 83

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ-TEIKK 3122
             IYL+F D+ +  PS+  D I E + P  CRLS++TYAAP+ V+IEY +G+  Q T ++K
Sbjct: 84   SIYLRFKDVRIGEPSMTVDGITEKINPHACRLSEMTYAAPILVNIEYIQGSHGQKTRLEK 143

Query: 3121 GH-VIGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
               VIG MPIMLRS  CVL   D+ ELARLGECPLDPGGYF++KGTEKV++IQEQLSKNR
Sbjct: 144  NDLVIGRMPIMLRSCCCVLQGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 203

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIID DKKG ++ASVTSS+   KSKTVI MEKE+IYL LNQF K IPIMV+MKAMGMESD
Sbjct: 204  IIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVVMKAMGMESD 263

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVK----SRFTNQKVSPM 2597
            QEVVQM+GRDPR+S LLLPSI+ECA   IYT+ QAL +L+ K  +    S  ++Q     
Sbjct: 264  QEVVQMLGRDPRFSALLLPSIEECAGIGIYTKEQALAYLDTKAKRPLYASSASDQDGRAF 323

Query: 2596 TILDDVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLI 2417
             IL DVF+ANVPV   +F PKC+YV VMLRRM+EAILN D +DDKDYVGNKRLELSGQLI
Sbjct: 324  CILRDVFIANVPVRCNNFRPKCLYVAVMLRRMMEAILNKDAMDDKDYVGNKRLELSGQLI 383

Query: 2416 SLLFEDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKK-DWITHGLERAISTGNWDVK 2240
            SLLFEDLFKT  +  KKSID  L+K SRSS++D S  L++ ++IT GLER +STGN+D++
Sbjct: 384  SLLFEDLFKTTLAQVKKSIDSVLSKTSRSSALDPSQFLRRMEFITTGLERTLSTGNFDIQ 443

Query: 2239 RFKMNRKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 2060
            RF+M+RKGMTQV++RLSFI  LG MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEG
Sbjct: 444  RFRMHRKGMTQVLARLSFIGTLGFMTKVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 503

Query: 2059 EACGLVKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILG 1880
            EACGLVKNLALMTHVTTDE+E PL++LCY LGVED+ LLS EELH+ NS+LVM NGLILG
Sbjct: 504  EACGLVKNLALMTHVTTDEDEGPLVSLCYCLGVEDLELLSGEELHTPNSFLVMLNGLILG 563

Query: 1879 KHRQPQRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIK 1700
            KHR+PQ FAN +RKLRRAGK+GEFVSVFVNEKQRCVY+ASDGGRVCRPLVIADKG+SRIK
Sbjct: 564  KHRRPQHFANALRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 623

Query: 1699 EHHMKELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGV 1520
            EHHMKEL DG R FDDFL +GLIEYLDVNEENNALIALYEGEA  +TTHIEIEPFTILGV
Sbjct: 624  EHHMKELLDGVRTFDDFLSDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGV 683

Query: 1519 CAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIEL 1340
             AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTT++IEL
Sbjct: 684  IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTRTIEL 743

Query: 1339 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK-KVSAVKQAY---- 1175
            VGYDKLGAGQNATVAV+SYSGYDIEDAIVMNKSSLDRGFGRCIVMK + S V Q Y    
Sbjct: 744  VGYDKLGAGQNATVAVISYSGYDIEDAIVMNKSSLDRGFGRCIVMKNRSSNVIQKYENGA 803

Query: 1174 -DRIIMPQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVL 998
             DRI+ PQ++   G     M ILD DGIASPGEI+RP DIL+NK+    +R   +S   L
Sbjct: 804  TDRILRPQRT---GPGSEKMLILDDDGIASPGEIIRPNDILLNKEVPIHTRGTRVSSDSL 860

Query: 997  PDSAYKFTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQK 818
            PDSAYK     +KG EGE+ V+DRV+L TD++ N+ IKF+IRHTRRPE+GDKFSSRHGQK
Sbjct: 861  PDSAYKPVRQSYKGPEGESCVMDRVSLSTDRNGNLSIKFLIRHTRRPELGDKFSSRHGQK 920

Query: 817  GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAF 638
            GVCG I+QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAF
Sbjct: 921  GVCGIIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 980

Query: 637  GEPSGHADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDK 458
            GEPSGHAD+VE ISETLV+HGF Y+GKDFIYSGITGCPLQAYIFMGPIYYQKLKHMV+DK
Sbjct: 981  GEPSGHADKVETISETLVKHGFCYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDK 1040

Query: 457  MHARARGPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQV 278
            MHAR  GPR+MLTRQPTEGR+R GGLR+GEMERDCLIAYGASMLIFERLM+SSDPF+ QV
Sbjct: 1041 MHARGNGPRVMLTRQPTEGRARKGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQV 1100

Query: 277  CRKCGLLGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            CRKCGLLGYY H LKTG CS CK+G++VSTM+LPYACKLL QELQ+MNIVPRL+L E
Sbjct: 1101 CRKCGLLGYYSHKLKTGICSSCKNGDDVSTMQLPYACKLLIQELQSMNIVPRLKLAE 1157


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1711 bits (4432), Expect = 0.0
 Identities = 850/1131 (75%), Positives = 972/1131 (85%), Gaps = 7/1131 (0%)
 Frame = -2

Query: 3478 KSLAAPVKSAVDKYQLLPEFLKVRGLVKQHLDSFNYFINCEIKKIIHAKDNERIVSDINP 3299
            + L AP+KSAVDK+QLLPEFLKVRGLVKQHLDSFNYF+N  IKKI+ A  N+RIVS ++P
Sbjct: 25   QKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIVRA--NDRIVSTVDP 82

Query: 3298 KIYLKFLDIYVESPSVEEDHIREPLIPQRCRLSDVTYAAPVKVDIEYTRGNPIQ-TEIKK 3122
             IYL+F D+ + +PS   D + E L P  CRLSD TYAAP+ V++EY  G+  Q T ++K
Sbjct: 83   GIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEK 142

Query: 3121 GHV-IGNMPIMLRSRRCVLYRLDDDELARLGECPLDPGGYFIVKGTEKVLMIQEQLSKNR 2945
              V IG MPIMLRSR CVLY  D+ ELARLGECPLDPGGYF++KGTEKV++IQEQLSKNR
Sbjct: 143  NDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNR 202

Query: 2944 IIIDTDKKGRVSASVTSSTHERKSKTVIVMEKERIYLQLNQFTKLIPIMVIMKAMGMESD 2765
            IIIDTDKKG ++ASVTSST   KSKT+I MEKE++YL LNQF K IPIMV++KAMGMESD
Sbjct: 203  IIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGMESD 262

Query: 2764 QEVVQMVGRDPRYSGLLLPSIQECASERIYTQYQALEFLEKKVVKSRFTNQKVSPMTILD 2585
            QEVVQMVGRDPRYS LLLPSI+ECA   IYTQ +ALE+L+ K  ++         +TIL 
Sbjct: 263  QEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLDGKENRA---------LTILR 313

Query: 2584 DVFLANVPVHQGDFYPKCIYVGVMLRRMLEAILNADTIDDKDYVGNKRLELSGQLISLLF 2405
            DVFLANVPVH+ +F PKC+YV VMLRRM+EA+LN D +DDKDYVGNKRLELSGQLISLLF
Sbjct: 314  DVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLF 373

Query: 2404 EDLFKTMSSAAKKSIDEALTKASRSSSMDISLHLKKDWITHGLERAISTGNWDVKRFKMN 2225
            EDLFKTM +  +++ID  LTK +RSS  D++ ++ +D IT+GLER +STGN+DVKRFKM+
Sbjct: 374  EDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMH 433

Query: 2224 RKGMTQVVSRLSFIAALGHMTRIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 2045
            RKGMTQV+ RLS+IA+LG MTR+ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL
Sbjct: 434  RKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 493

Query: 2044 VKNLALMTHVTTDEEESPLITLCYSLGVEDMSLLSAEELHSVNSYLVMFNGLILGKHRQP 1865
            VKNLALMTHVTTD+EE PLI+LCY LGVED+ LLS EELH+ NS+LV+FNGLILGKHR+P
Sbjct: 494  VKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRP 553

Query: 1864 QRFANGMRKLRRAGKIGEFVSVFVNEKQRCVYLASDGGRVCRPLVIADKGVSRIKEHHMK 1685
            Q F N MRKLRRAGKIGEFVSVFVNEKQR VYLASDGGRVCRPLVIAD+GVSRIKEHHMK
Sbjct: 554  QYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMK 613

Query: 1684 ELRDGARVFDDFLREGLIEYLDVNEENNALIALYEGEADSKTTHIEIEPFTILGVCAGLI 1505
            ELRDG R FDDFLR+GLIEYLDVNEENNAL+ALYEGEA  +TTHIEIEPFTILGVCAGLI
Sbjct: 614  ELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLI 673

Query: 1504 PYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRPLLTTKSIELVGYDK 1325
            P+PHHNQSPRNTYQCAMGKQAMGNIAYNQL RMD+LLYLLVYPQRPLLTT++IELVGYDK
Sbjct: 674  PFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDK 733

Query: 1324 LGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKVSAVKQAY-----DRIIM 1160
            LGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK  A++Q Y     DRI+ 
Sbjct: 734  LGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILR 793

Query: 1159 PQKSSGKGGLDSHMQILDTDGIASPGEIVRPLDILINKQSATVSRDQLISHKVLPDSAYK 980
            P ++          ++LD DG+A+PGEI++P DI + K+    +   + S   L +  Y+
Sbjct: 794  PDRTV------ERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYR 847

Query: 979  FTPVKHKGTEGETTVVDRVALFTDKDRNMVIKFMIRHTRRPEVGDKFSSRHGQKGVCGTI 800
             +P+ +KG EGE+ V+DRVAL +D++ N+ IK MIRHTRRPEVGDKFSSRHGQKGVCGTI
Sbjct: 848  PSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTI 907

Query: 799  VQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFHHGSAFGEPSGH 620
            +QQEDFPFSERGICPDLIMNPHGFPSRMT+GKMIELLGGKAGVSCGRFH+GSAFGEPSGH
Sbjct: 908  IQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 967

Query: 619  ADRVEVISETLVRHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVVDKMHARAR 440
            AD VE ISETLV  GFSY+GKD IYSGITGCPLQAYIFMGPIYYQKLKHMV+DKMHAR  
Sbjct: 968  ADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGN 1027

Query: 439  GPRMMLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMISSDPFQAQVCRKCGL 260
            GPR+MLTRQPTEGR+R+GGLR+GEMERDCLIAYGASMLIFERLMISSDPF+ QVCR CGL
Sbjct: 1028 GPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCGL 1087

Query: 259  LGYYHHSLKTGFCSMCKSGENVSTMKLPYACKLLFQELQAMNIVPRLQLTE 107
            LGY++  L+ G CS CK+G+N+STMKLPYACKLL QELQ+MNIVPRL+L E
Sbjct: 1088 LGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRLKLAE 1138