BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00003700
         (1800 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   539   e-150
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   536   e-149
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   535   e-149
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   520   e-144
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   456   e-125
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   450   e-123
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   450   e-123
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     443   e-121
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   443   e-121
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   443   e-121
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              443   e-121
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   442   e-121
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   442   e-121
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   441   e-121
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   441   e-120
ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF,...   439   e-120
ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF,...   439   e-120
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   438   e-120
ref|XP_010035966.1| PREDICTED: RNA polymerase sigma factor sigF,...   438   e-120
ref|XP_010035965.1| PREDICTED: RNA polymerase sigma factor sigF,...   438   e-120

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  539 bits (1389), Expect = e-150
 Identities = 297/554 (53%), Positives = 366/554 (66%), Gaps = 4/554 (0%)
 Frame = -3

Query: 1789 SSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWR 1622
            SSSV ++HEQA P+V+   TTSI RHFPA  L QEQ DD RP L I    +T    LD R
Sbjct: 24   SSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRR 83

Query: 1621 RMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEK 1442
            ++ + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A   
Sbjct: 84   KLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGT 143

Query: 1441 TKTVGTKPIKQSSSNPMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXX 1262
             K V            +RP D L+                                    
Sbjct: 144  VKNVD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEP 192

Query: 1261 XXXXDVMVPIXXXXXXXXXXXXXXXXXXXRLPKTPKVDLHGDPSSRMTDRDRKISSKNFD 1082
                +  +P+                    +P+ PKV +    +SR +D  +KI  + FD
Sbjct: 193  RNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFD 249

Query: 1081 PSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQFGREPTLVEWAEAV 902
             +DPLRLFLWGPETK+LLT KEE +L V +Q L++LEEVKQ+LQ QF REPTLVEWAEAV
Sbjct: 250  TNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAV 309

Query: 901  GMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEK 722
            GM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEK
Sbjct: 310  GMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEK 369

Query: 721  FKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPT 542
            FKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PT
Sbjct: 370  FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 429

Query: 541  NEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQL 362
            NEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQL
Sbjct: 430  NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 489

Query: 361  MRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKL 182
            MRRH+RNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KL
Sbjct: 490  MRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKL 548

Query: 181  KNHLSSEGLEAYVN 140
            K  LSS+GL AY +
Sbjct: 549  KQCLSSQGLGAYAD 562


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  536 bits (1380), Expect = e-149
 Identities = 297/558 (53%), Positives = 367/558 (65%), Gaps = 6/558 (1%)
 Frame = -3

Query: 1795 SLSSSVPI--IHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKET---- 1634
            S SS +P+  +HEQA P+V+   TTSI RHFPA  L QEQ DD RP L I    +T    
Sbjct: 23   SSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAM 82

Query: 1633 LDWRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESL 1454
            LD R++ + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S 
Sbjct: 83   LDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQST 142

Query: 1453 ATEKTKTVGTKPIKQSSSNPMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXX 1274
            A    K V            +RP D L+                                
Sbjct: 143  AAGTVKNVD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLP 191

Query: 1273 XXXXXXXXDVMVPIXXXXXXXXXXXXXXXXXXXRLPKTPKVDLHGDPSSRMTDRDRKISS 1094
                    +  +P+                    +P+ PKV +    +SR +D  +KI  
Sbjct: 192  DLEPRNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH- 248

Query: 1093 KNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQFGREPTLVEW 914
            + FD +DPLRLFLWGPETK+LLT KEE +L V +Q L++LEEVKQ+LQ QF REPTLVEW
Sbjct: 249  EGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEW 308

Query: 913  AEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMK 734
            AEAVGM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMK
Sbjct: 309  AEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMK 368

Query: 733  SLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG 554
            SLEKFKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEG
Sbjct: 369  SLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG 428

Query: 553  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 374
            H PTNEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++  
Sbjct: 429  HHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCV 488

Query: 373  TKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 194
             KQLMRRH+RNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRA
Sbjct: 489  AKQLMRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRA 547

Query: 193  LDKLKNHLSSEGLEAYVN 140
            L KLK  LSS+GL AY +
Sbjct: 548  LHKLKQCLSSQGLGAYAD 565


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  535 bits (1377), Expect = e-149
 Identities = 294/551 (53%), Positives = 363/551 (65%), Gaps = 4/551 (0%)
 Frame = -3

Query: 1780 VPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWRRMN 1613
            V ++HEQA P+V+   TTSI RHFPA  L QEQ DD RP L I    +T    LD R++ 
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 1612 NAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEKTKT 1433
            + V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A    K 
Sbjct: 62   DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKN 121

Query: 1432 VGTKPIKQSSSNPMRPWDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXX 1253
            V            +RP D L+                                       
Sbjct: 122  VD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNL 170

Query: 1252 XDVMVPIXXXXXXXXXXXXXXXXXXXRLPKTPKVDLHGDPSSRMTDRDRKISSKNFDPSD 1073
             +  +P+                    +P+ PKV +    +SR +D  +KI  + FD +D
Sbjct: 171  AN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTND 227

Query: 1072 PLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQFGREPTLVEWAEAVGMN 893
            PLRLFLWGPETK+LLT KEE +L V +Q L++LEEVKQ+LQ QF REPTLVEWAEAVGM 
Sbjct: 228  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 287

Query: 892  CRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKP 713
            C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP
Sbjct: 288  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 347

Query: 712  EVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEE 533
            + GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEE
Sbjct: 348  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEE 407

Query: 532  LARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRR 353
            LA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRR
Sbjct: 408  LAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRR 467

Query: 352  HIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNH 173
            H+RNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  
Sbjct: 468  HVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQC 526

Query: 172  LSSEGLEAYVN 140
            LSS+GL AY +
Sbjct: 527  LSSQGLGAYAD 537


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  520 bits (1338), Expect = e-144
 Identities = 287/535 (53%), Positives = 352/535 (65%), Gaps = 4/535 (0%)
 Frame = -3

Query: 1732 TTSIARHFPALALCQEQCDDFRPSLHITEVKET----LDWRRMNNAVSVCKEKKSYQYHQ 1565
            TTSI RHFPA  L QEQ DD RP L I    +T    LD R++ + V + +EKKS Q  +
Sbjct: 3    TTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQPDR 62

Query: 1564 YLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEKTKTVGTKPIKQSSSNPMRP 1385
            Y + FERQ LYWPGLWYL        K +L   T+S A    K V            +RP
Sbjct: 63   YWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVD-----------VRP 111

Query: 1384 WDVLDXXXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXDVMVPIXXXXXXXXX 1205
             D L+                                        +  +P+         
Sbjct: 112  CDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLAN-KIPLREEVAVRSK 170

Query: 1204 XXXXXXXXXXRLPKTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLT 1025
                       +P+ PKV +    +SR +D  +KI  + FD +DPLRLFLWGPETK+LLT
Sbjct: 171  RLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTNDPLRLFLWGPETKQLLT 228

Query: 1024 AKEEFDLSVKIQALMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSRE 845
             KEE +L V +Q L++LEEVKQ+LQ QF REPTLVEWAEAVGM C+ LQS LHSGNSSRE
Sbjct: 229  PKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSSRE 288

Query: 844  KMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQ 665
            K+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP+ GCRF+TY+YWWIRQ
Sbjct: 289  KIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWIRQ 348

Query: 664  TIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEELARRVGIRVEKLEMVL 485
             IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEELA+RVGI VEKLE + 
Sbjct: 349  AIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLERLF 408

Query: 484  ASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQI 305
             S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRRH+RNL+ +L P+ER+I
Sbjct: 409  MSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKERRI 468

Query: 304  IRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
            IR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  LSS+GL AY +
Sbjct: 469  IRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYAD 522


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  456 bits (1173), Expect = e-125
 Identities = 229/341 (67%), Positives = 287/341 (84%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1159 PKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALM 980
            PKV +    SSR TD  RK+S + FDP+DPLRLFLWGPETK+LLTAKEE +LS ++Q LM
Sbjct: 227  PKVTIRETYSSRRTDVRRKLS-EGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLM 285

Query: 979  KLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAK 800
            +LE+VK KLQ QFGREPTLVEWAEA+G+ C  LQ+ LHSGNSSR+K+IYAN R+VVH+AK
Sbjct: 286  RLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAK 345

Query: 799  QFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRL 620
            Q+Q+RGLSLQDLLQEGSMGLMKS+E+FKP+VGCRF+TY+YWWIRQTIR++I+Q+SR +RL
Sbjct: 346  QYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRL 405

Query: 619  PENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVW 443
            PENV+ LL+++ + ++ +I+EG H P+ EELARRVGI VEKL+ +L + R P+SMQQSVW
Sbjct: 406  PENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVW 465

Query: 442  QDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGK 263
             D+ +TFQE+T D   EIP++S  KQLMR+H+RNLL VLSPRER II+LRFGI++  +  
Sbjct: 466  VDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKE-N 524

Query: 262  TLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
            +LS IG+MFGLSKERVRQLESRAL KLK  L+  GL AYV+
Sbjct: 525  SLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVD 565



 Score = 72.0 bits (175), Expect = 1e-09
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
 Frame = -3

Query: 1789 SSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKE------TLD 1628
            SSSV + HEQAAP       TS+ARHFP   L QEQ DD+RP   +   KE        D
Sbjct: 29   SSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATD 88

Query: 1627 WRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
             +++ N  S+ +E  S  + Q    FE++ L WP L  L S   +E      S+ +S+A 
Sbjct: 89   KQQIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146

Query: 1447 EKTKTVGTKP 1418
            +  + V  +P
Sbjct: 147  DTKEIVDVEP 156


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Amborella
            trichopoda]
          Length = 581

 Score =  450 bits (1157), Expect = e-123
 Identities = 219/323 (67%), Positives = 268/323 (82%)
 Frame = -3

Query: 1114 RDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQFGR 935
            +  K+ +K+FDP+DPLR FLWGP TK+LLT KEE +L VKIQ LM++EEVK++L++QFG 
Sbjct: 255  KPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGC 314

Query: 934  EPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQE 755
            EPT+VEWA A GM+   LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQE
Sbjct: 315  EPTVVEWARAAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQE 374

Query: 754  GSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVR 575
            GS+GLMKSLEKFKP+ GCRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N R
Sbjct: 375  GSVGLMKSLEKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNAR 434

Query: 574  RLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEA 395
            RL+ QEGH+PTNEELA+RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ 
Sbjct: 435  RLYFQEGHRPTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKV 494

Query: 394  EIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERV 215
            E PE +  KQLMRRH+RNLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+
Sbjct: 495  ETPEKNVAKQLMRRHVRNLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERI 553

Query: 214  RQLESRALDKLKNHLSSEGLEAY 146
            RQ+ES+AL+KLKN   ++GLE Y
Sbjct: 554  RQVESKALEKLKNCTQTQGLEVY 576



 Score = 85.1 bits (209), Expect = 2e-13
 Identities = 58/145 (40%), Positives = 74/145 (51%), Gaps = 6/145 (4%)
 Frame = -3

Query: 1789 SSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFR-PSLHITEVK---ETLDWR 1622
            SSSV    +QA        TTS  RHFPA  +  EQ DD R P+    E K   E +D  
Sbjct: 28   SSSVLTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRA 87

Query: 1621 RMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQI--LPSSTESLAT 1448
            R     S+  E K+++  QYLK FERQ LYWP LWYL SPS    K +  LP   + L T
Sbjct: 88   RTEVYASIGAETKNFEIDQYLKDFERQLLYWPALWYL-SPSRILPKSLLSLPFQCKPLET 146

Query: 1447 EKTKTVGTKPIKQSSSNPMRPWDVL 1373
            +    +     KQ++ + + P DVL
Sbjct: 147  DIESEIKESRKKQTNCSSLNPMDVL 171


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  450 bits (1157), Expect = e-123
 Identities = 219/323 (67%), Positives = 268/323 (82%)
 Frame = -3

Query: 1114 RDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQFGR 935
            +  K+ +K+FDP+DPLR FLWGP TK+LLT KEE +L VKIQ LM++EEVK++L++QFG 
Sbjct: 247  KPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGC 306

Query: 934  EPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQE 755
            EPT+VEWA A GM+   LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQE
Sbjct: 307  EPTVVEWARAAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQE 366

Query: 754  GSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVR 575
            GS+GLMKSLEKFKP+ GCRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N R
Sbjct: 367  GSVGLMKSLEKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNAR 426

Query: 574  RLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEA 395
            RL+ QEGH+PTNEELA+RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ 
Sbjct: 427  RLYFQEGHRPTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKV 486

Query: 394  EIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERV 215
            E PE +  KQLMRRH+RNLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+
Sbjct: 487  ETPEKNVAKQLMRRHVRNLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERI 545

Query: 214  RQLESRALDKLKNHLSSEGLEAY 146
            RQ+ES+AL+KLKN   ++GLE Y
Sbjct: 546  RQVESKALEKLKNCTQTQGLEVY 568



 Score = 82.0 bits (201), Expect = 1e-12
 Identities = 54/137 (39%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
 Frame = -3

Query: 1765 EQAAPVVMPTQTTSIARHFPALALCQEQCDDFR-PSLHITEVK---ETLDWRRMNNAVSV 1598
            +QA        TTS  RHFPA  +  EQ DD R P+    E K   E +D  R     S+
Sbjct: 28   DQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASI 87

Query: 1597 CKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQI--LPSSTESLATEKTKTVGT 1424
              E K+++  QYLK FERQ LYWP LWYL SPS    K +  LP   + L T+    +  
Sbjct: 88   GAETKNFEIDQYLKDFERQLLYWPALWYL-SPSRILPKSLLSLPFQCKPLETDIESEIKE 146

Query: 1423 KPIKQSSSNPMRPWDVL 1373
               KQ++ + + P DVL
Sbjct: 147  SRKKQTNCSSLNPMDVL 163


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  443 bits (1140), Expect = e-121
 Identities = 228/343 (66%), Positives = 275/343 (80%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1165 KTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQA 986
            + PKV +H    SR TD  RK SS+ FDP+DPLR+FLWGPETK+LLTAKEEF+L   IQ 
Sbjct: 206  RVPKVGVHETFHSRRTDIKRK-SSEGFDPNDPLRMFLWGPETKQLLTAKEEFELIDHIQD 264

Query: 985  LMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHV 806
            +MKLEEVK +L  QFG EPTL+EWAEA G++CR LQS L + N SREK+I AN R+VVH+
Sbjct: 265  MMKLEEVKSRLLSQFGHEPTLIEWAEAAGISCRVLQSQLRTANKSREKLINANLRMVVHI 324

Query: 805  AKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRII 626
            AKQ+  +GLS  DLLQEGSMGLMKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR I
Sbjct: 325  AKQYLGKGLSFPDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTI 384

Query: 625  RLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQS 449
            RLPENVY LL ++   ++  IQEG H+PT EELARRVGI VEKLE +L + R P+SMQQ 
Sbjct: 385  RLPENVYTLLGKVLEAKKSCIQEGNHRPTKEELARRVGITVEKLEKLLYTTRMPLSMQQP 444

Query: 448  VWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQ 269
            VW  +  TFQEI AD E EIP+IS  KQ+MR+H+RNLL +LSP+ER+IIRLRFGI+DG Q
Sbjct: 445  VWAGQDTTFQEIIADTEIEIPDISVGKQMMRQHVRNLLSILSPKERRIIRLRFGIEDGKQ 504

Query: 268  GKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
             K+LS IG +FGLSKERVRQLESRAL +LK  LSS+GL AY +
Sbjct: 505  -KSLSEIGAVFGLSKERVRQLESRALYRLKQCLSSQGLGAYTD 546



 Score = 60.8 bits (146), Expect = 3e-06
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
 Frame = -3

Query: 1759 AAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKE----TLDWRRMNNAVSVCK 1592
            +AP      TTS+AR+FP   L +EQ +++R   HI + +     TLD R+M N     +
Sbjct: 21   SAPAATSMPTTSLARNFPTSVLLREQREEYRVLCHILKEERTSEATLDMRQMLN--GAVQ 78

Query: 1591 EKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVKQILPSSTESLATEKTKT 1433
            E+ S    Q ++ FER+ L WPGLW +        SPSS+   Q +  +T+   +  T++
Sbjct: 79   EEISDNSDQLVQDFERRLLQWPGLWPIFPSLQTGGSPSSSLAMQPVTPTTDGEKSAGTES 138


>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
            guineensis]
          Length = 570

 Score =  443 bits (1140), Expect = e-121
 Identities = 223/326 (68%), Positives = 268/326 (82%)
 Frame = -3

Query: 1120 TDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQLQF 941
            +D   KI     + +DPLRLFLWGPETK+LLT KEE DL V+IQ +++LEEV+Q+L+LQF
Sbjct: 242  SDMKEKIDKGLINQNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDVVRLEEVQQRLRLQF 301

Query: 940  GREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLL 761
             REPTL EWA+AVGM+C+ LQSCL SG  SREKMI AN RLVVHVAKQ++ +GLS+QDLL
Sbjct: 302  DREPTLSEWAKAVGMSCQVLQSCLSSGKRSREKMINANLRLVVHVAKQYEGKGLSVQDLL 361

Query: 760  QEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRN 581
            QEGS GLMKSLEKFKP+ GCRF+TY+YWWIRQ+IRRAI  NSR+IRLPENV+ LL +I+N
Sbjct: 362  QEGSRGLMKSLEKFKPKAGCRFATYAYWWIRQSIRRAIFLNSRVIRLPENVFGLLKRIKN 421

Query: 580  VRRLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADP 401
             RRLFIQEGH PTNEE+A+RVGI VEKLE +L + R+P+S+Q+ VW D+ V FQEITADP
Sbjct: 422  ARRLFIQEGHAPTNEEIAKRVGISVEKLEALLLTTRNPISIQECVWTDQDVKFQEITADP 481

Query: 400  EAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKE 221
              E PE+S  KQ+MR+H+R LL +L PRERQII+ RFGI +  Q K+L+ IG MFGLSKE
Sbjct: 482  GVETPELSIAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNEQ-KSLTEIGAMFGLSKE 540

Query: 220  RVRQLESRALDKLKNHLSSEGLEAYV 143
            RVRQLESRALDKLK  L S GL AY+
Sbjct: 541  RVRQLESRALDKLKGCLPSHGLGAYL 566



 Score = 65.1 bits (157), Expect = 2e-07
 Identities = 43/138 (31%), Positives = 71/138 (51%)
 Frame = -3

Query: 1786 SSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKETLDWRRMNNA 1607
            +SVP++H+QA+       TT IA HFP   L  EQ DD++ +    E K   D +++ + 
Sbjct: 26   TSVPMLHDQASWTNTSVPTTPIACHFPISVLSHEQHDDYKTNCISKEEKNVQDNQQVRSG 85

Query: 1606 VSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEKTKTVG 1427
             S  +EK+  ++ QYL+  ++Q LY    WY      TE K  L     ++A E  K+  
Sbjct: 86   RSCYEEKEKCEFAQYLRYSKQQLLYHQVFWYPFLSLYTEEKTPL-----AMAVEPIKSDS 140

Query: 1426 TKPIKQSSSNPMRPWDVL 1373
                 ++ ++ +RP +VL
Sbjct: 141  KGVQLENCADFVRPTEVL 158


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  443 bits (1140), Expect = e-121
 Identities = 222/343 (64%), Positives = 277/343 (80%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1165 KTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQA 986
            + PKV +H +  SR  +  RKI+ + +DP DPLRLFLWGPET++LLTAKEE +L V+IQ 
Sbjct: 224  RNPKVAVHENHGSRRAEVQRKIN-EGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQE 282

Query: 985  LMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHV 806
            LM+LEEVK++LQ    REPT+VEWAEAVG++C+ LQS LHSGN SR+K+IYAN R+VVH+
Sbjct: 283  LMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHI 342

Query: 805  AKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRII 626
            AKQ+Q RGL+LQDLLQEGSMGLM S+EKFKP  GCRF++Y+YWWIRQ +R+AI Q+SR I
Sbjct: 343  AKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTI 402

Query: 625  RLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQS 449
            RLPEN+Y+LL +++  +RLFIQEG H PT EE+A RVGI +EKL+ +L   R P+SMQQ 
Sbjct: 403  RLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQP 462

Query: 448  VWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQ 269
            VW D+  TFQE+TAD   EIP++S  KQLMR+H+RNLL VL+P+ER+IIRLRFGI D G 
Sbjct: 463  VWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGD-GI 521

Query: 268  GKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
             +TLS IG +FG SKERVRQLE RAL KLK  LSS GLE+Y +
Sbjct: 522  PRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTD 564



 Score = 76.6 bits (187), Expect = 6e-11
 Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
 Frame = -3

Query: 1789 SSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLDWR 1622
            SSSV ++H+Q AP V    TT IAR FP   L QEQ D++RP     +     + TL+ R
Sbjct: 30   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 88

Query: 1621 RMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSS-TESLATE 1445
            +M   VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS  +S+ T+
Sbjct: 89   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 147

Query: 1444 KTKTVGTKP 1418
               ++  KP
Sbjct: 148  IENSMDVKP 156


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  443 bits (1140), Expect = e-121
 Identities = 222/343 (64%), Positives = 277/343 (80%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1165 KTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQA 986
            + PKV +H +  SR  +  RKI+ + +DP DPLRLFLWGPET++LLTAKEE +L V+IQ 
Sbjct: 218  RNPKVAVHENHGSRRAEVQRKIN-EGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQE 276

Query: 985  LMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHV 806
            LM+LEEVK++LQ    REPT+VEWAEAVG++C+ LQS LHSGN SR+K+IYAN R+VVH+
Sbjct: 277  LMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHI 336

Query: 805  AKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRII 626
            AKQ+Q RGL+LQDLLQEGSMGLM S+EKFKP  GCRF++Y+YWWIRQ +R+AI Q+SR I
Sbjct: 337  AKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTI 396

Query: 625  RLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQS 449
            RLPEN+Y+LL +++  +RLFIQEG H PT EE+A RVGI +EKL+ +L   R P+SMQQ 
Sbjct: 397  RLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQP 456

Query: 448  VWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQ 269
            VW D+  TFQE+TAD   EIP++S  KQLMR+H+RNLL VL+P+ER+IIRLRFGI D G 
Sbjct: 457  VWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGD-GI 515

Query: 268  GKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
             +TLS IG +FG SKERVRQLE RAL KLK  LSS GLE+Y +
Sbjct: 516  PRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTD 558



 Score = 76.6 bits (187), Expect = 6e-11
 Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
 Frame = -3

Query: 1789 SSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLDWR 1622
            SSSV ++H+Q AP V    TT IAR FP   L QEQ D++RP     +     + TL+ R
Sbjct: 24   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 82

Query: 1621 RMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSS-TESLATE 1445
            +M   VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS  +S+ T+
Sbjct: 83   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141

Query: 1444 KTKTVGTKP 1418
               ++  KP
Sbjct: 142  IENSMDVKP 150


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  442 bits (1136), Expect = e-121
 Identities = 221/331 (66%), Positives = 274/331 (82%), Gaps = 1/331 (0%)
 Frame = -3

Query: 1129 SRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQ 950
            S+  D  +++S + FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ LM LE VK +L+
Sbjct: 226  SKSADVQKRLS-QGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLE 284

Query: 949  LQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQ 770
             QFGREPTLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQ
Sbjct: 285  SQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQ 344

Query: 769  DLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQ 590
            DLLQEG++GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL +
Sbjct: 345  DLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGK 404

Query: 589  IRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 413
            +   +R +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEI
Sbjct: 405  VMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEI 464

Query: 412  TADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 233
            TAD E EIP++S  KQLMR+HIR LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FG
Sbjct: 465  TADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFG 523

Query: 232  LSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
            LSKERVRQLESRAL KLK  + S GL+AY +
Sbjct: 524  LSKERVRQLESRALYKLKQCVGSHGLDAYAD 554



 Score = 78.2 bits (191), Expect = 2e-11
 Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
 Frame = -3

Query: 1795 SLSSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLD 1628
            SL SSV I+ EQA P V    TTS A+HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1627 WRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1448
             R+     S  + K S +  Q ++ FE Q  +WP  W L  PS       +  +T+S+  
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTR 142

Query: 1447 EKTKTVGTKP 1418
               K +  +P
Sbjct: 143  STDKLIDVEP 152


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  442 bits (1136), Expect = e-121
 Identities = 221/331 (66%), Positives = 274/331 (82%), Gaps = 1/331 (0%)
 Frame = -3

Query: 1129 SRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQ 950
            S+  D  +++S + FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ LM LE VK +L+
Sbjct: 239  SKSADVQKRLS-QGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLE 297

Query: 949  LQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQ 770
             QFGREPTLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQ
Sbjct: 298  SQFGREPTLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQ 357

Query: 769  DLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQ 590
            DLLQEG++GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL +
Sbjct: 358  DLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGK 417

Query: 589  IRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 413
            +   +R +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEI
Sbjct: 418  VMEAKRSYIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEI 477

Query: 412  TADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 233
            TAD E EIP++S  KQLMR+HIR LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FG
Sbjct: 478  TADTEIEIPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFG 536

Query: 232  LSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
            LSKERVRQLESRAL KLK  + S GL+AY +
Sbjct: 537  LSKERVRQLESRALYKLKQCVGSHGLDAYAD 567



 Score = 68.9 bits (167), Expect = 1e-08
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
 Frame = -3

Query: 1795 SLSSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLD 1628
            SL SSV I+ EQA P V    TTS A+HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1627 WRRM-------------NNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEV 1487
             R+                  S  + K S +  Q ++ FE Q  +WP  W L  PS    
Sbjct: 83   RRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQ 142

Query: 1486 KQILPSSTESLATEKTKTVGTKP 1418
               +  +T+S+     K +  +P
Sbjct: 143  NPSMSFTTQSVTRSTDKLIDVEP 165


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  441 bits (1135), Expect = e-121
 Identities = 223/342 (65%), Positives = 275/342 (80%), Gaps = 2/342 (0%)
 Frame = -3

Query: 1165 KTPKVDLHGDPSSRMTDRD-RKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQ 989
            K PK  + G  S+  T  D RK  S+ F+P+DPLRLFLWGPET++LLTAKEE +L  ++Q
Sbjct: 223  KVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQ 282

Query: 988  ALMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVH 809
             L KLEEVK +LQ QFGREPTL+EWAEAVG++C+ L+S L SG SSREK+IYAN R+VVH
Sbjct: 283  DLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVH 342

Query: 808  VAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRI 629
            +AKQ+Q RGL LQDL+QEGSMGLMKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR 
Sbjct: 343  IAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRT 402

Query: 628  IRLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQ 452
            IRLPENVY+LL ++   ++  IQEG H P  EELARRVGI VEKLE +L + R P+SMQQ
Sbjct: 403  IRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQ 462

Query: 451  SVWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGG 272
             VW D+  TFQE+TAD   EIP++S  KQLMR+H+R+LL +L+ RER+IIRLR+GI+DG 
Sbjct: 463  PVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGK 522

Query: 271  QGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAY 146
            Q ++LS IG MFGLSKERVRQLESRA  KL+  L S+GL AY
Sbjct: 523  Q-RSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAY 563



 Score = 67.0 bits (162), Expect = 5e-08
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
 Frame = -3

Query: 1798 TSLSSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITEVKET----L 1631
            +S S+SV ++HEQA P V     TS+ARHFP   L QEQ D+F+P LH+ +  +T    L
Sbjct: 27   SSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAAL 86

Query: 1630 DWRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D  ++    SV ++     ++  +   + Q L    L   SS   T  K   P + ESL 
Sbjct: 87   DRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSS-LQTGAKPSTPLTLESLT 145

Query: 1450 TEKTKTVGTKP 1418
            T   K +  +P
Sbjct: 146  TASNKHMDVEP 156


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  441 bits (1133), Expect = e-120
 Identities = 221/331 (66%), Positives = 274/331 (82%), Gaps = 1/331 (0%)
 Frame = -3

Query: 1129 SRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKLQ 950
            S+  D  +++S + FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ LM LE VK +L+
Sbjct: 204  SKSADVQKRLS-QGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLE 262

Query: 949  LQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQ 770
             QFGREPTLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQ
Sbjct: 263  SQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQ 322

Query: 769  DLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQ 590
            DLLQEG++GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL +
Sbjct: 323  DLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGK 382

Query: 589  IRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 413
            +   +R +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEI
Sbjct: 383  VMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEI 442

Query: 412  TADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 233
            TAD E EIP++S  KQLMR+HIR LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FG
Sbjct: 443  TADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFG 501

Query: 232  LSKERVRQLESRALDKLKNHLSSEGLEAYVN 140
            LSKERVRQLESRAL KLK  + S GL+AY +
Sbjct: 502  LSKERVRQLESRALYKLKQCVGSHGLDAYAD 532



 Score = 71.2 bits (173), Expect = 2e-09
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
 Frame = -3

Query: 1795 SLSSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETLD 1628
            SL+SSV I+ EQA P V    TTS A+HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLD 82

Query: 1627 WRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLS 1508
             R+     S  + K S +  Q ++ FE Q  +WP  W L+
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNLT 122


>ref|XP_008779218.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 529

 Score =  439 bits (1130), Expect = e-120
 Identities = 220/330 (66%), Positives = 268/330 (81%)
 Frame = -3

Query: 1132 SSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKL 953
            S  MT    K   K  DP+DPLRLFLWGPETK+LLT KEE DL V+IQ LM+LEEV+Q+L
Sbjct: 197  SKSMTTGMNKKIDKGLDPNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQRL 256

Query: 952  QLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSL 773
            +LQF REPTL EWA+AVGM+C+ LQ CL SG  SREKMI AN RLVVHVAKQ++ +GL++
Sbjct: 257  RLQFDREPTLSEWAQAVGMSCQALQCCLSSGKRSREKMINANLRLVVHVAKQYEGKGLNI 316

Query: 772  QDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLT 593
             DLLQEGS GLMKSLEKFKP+VGCRFSTY+YWWIRQ+IR+AI  NSR+IRLPENV+ LL 
Sbjct: 317  LDLLQEGSRGLMKSLEKFKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLK 376

Query: 592  QIRNVRRLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 413
             I+  RRLFIQEGH PTNEE+A++VGI VE+L+++L + R+P+S+Q+  W D+ VTFQEI
Sbjct: 377  SIKKARRLFIQEGHAPTNEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQEI 436

Query: 412  TADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 233
            T DPE E P++S  KQ+MR+H+R LL +L PRERQII+ RFGI +  + K+L+ IG MFG
Sbjct: 437  TGDPEVETPDLSMAKQMMRQHVRGLLRILKPRERQIIQYRFGIPN-NKPKSLTEIGVMFG 495

Query: 232  LSKERVRQLESRALDKLKNHLSSEGLEAYV 143
            LSKERVRQLESRALDKLK+   S GL AY+
Sbjct: 496  LSKERVRQLESRALDKLKDCRLSHGLGAYL 525


>ref|XP_008807704.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Phoenix dactylifera]
          Length = 466

 Score =  439 bits (1130), Expect = e-120
 Identities = 220/330 (66%), Positives = 268/330 (81%)
 Frame = -3

Query: 1132 SSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQALMKLEEVKQKL 953
            S  MT    K   K  DP+DPLRLFLWGPETK+LLT KEE DL V+IQ LM+LEEV+Q+L
Sbjct: 134  SKSMTTGMNKKIDKGLDPNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDLMRLEEVQQRL 193

Query: 952  QLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSL 773
            +LQF REPTL EWA+AVGM+C+ LQ CL SG  SREKMI AN RLVVHVAKQ++ +GL++
Sbjct: 194  RLQFDREPTLSEWAQAVGMSCQALQCCLSSGKRSREKMINANLRLVVHVAKQYEGKGLNI 253

Query: 772  QDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLT 593
             DLLQEGS GLMKSLEKFKP+VGCRFSTY+YWWIRQ+IR+AI  NSR+IRLPENV+ LL 
Sbjct: 254  LDLLQEGSRGLMKSLEKFKPKVGCRFSTYAYWWIRQSIRKAIFLNSRVIRLPENVFGLLK 313

Query: 592  QIRNVRRLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 413
             I+  RRLFIQEGH PTNEE+A++VGI VE+L+++L + R+P+S+Q+  W D+ VTFQEI
Sbjct: 314  SIKKARRLFIQEGHAPTNEEIAKQVGISVERLKVLLLTTRNPISIQECAWTDQDVTFQEI 373

Query: 412  TADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 233
            T DPE E P++S  KQ+MR+H+R LL +L PRERQII+ RFGI +  + K+L+ IG MFG
Sbjct: 374  TGDPEVETPDLSMAKQMMRQHVRGLLRILKPRERQIIQYRFGIPN-NKPKSLTEIGVMFG 432

Query: 232  LSKERVRQLESRALDKLKNHLSSEGLEAYV 143
            LSKERVRQLESRALDKLK+   S GL AY+
Sbjct: 433  LSKERVRQLESRALDKLKDCRLSHGLGAYL 462


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  438 bits (1127), Expect = e-120
 Identities = 224/343 (65%), Positives = 275/343 (80%), Gaps = 3/343 (0%)
 Frame = -3

Query: 1165 KTPKVDLHGDPSSRMTDRD--RKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKI 992
            K PK  L G  S+  T  D  +KIS + F+P+DPLRLFLWGPET++LLTAKEE +L  ++
Sbjct: 228  KVPKSKLIGHESNSFTSSDVPKKIS-EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARV 286

Query: 991  QALMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVV 812
            Q L KLEEVK +LQ QFGREPTL+EWAEAVG++C+ L+S L SG SSREK+IYAN R+VV
Sbjct: 287  QDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVV 346

Query: 811  HVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSR 632
            H+AKQ+Q RGL LQDL+QEGSMGLMKS+EKFKP+ GCRF+TY+YWWIRQT+R+AI Q+SR
Sbjct: 347  HIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSR 406

Query: 631  IIRLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQ 455
             IRLPENVY+LL ++   ++  IQEG H P  EELA RVGI VEKLE +L + R P+SMQ
Sbjct: 407  TIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQ 466

Query: 454  QSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDG 275
            Q VW D+  TFQE+TAD   EIP++S  KQLMR+H+R+LL +L+ RERQIIRLR+GI+DG
Sbjct: 467  QPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDG 526

Query: 274  GQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAY 146
             Q ++LS IG MFGLSKERVRQLESRA  KL+  L S+GL AY
Sbjct: 527  KQ-RSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAY 568



 Score = 68.2 bits (165), Expect = 2e-08
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
 Frame = -3

Query: 1798 TSLSSSVPIIHEQAAPVVMPTQTTSIARHFPALALCQEQCDDFRPSLHITE----VKETL 1631
            +S S+SV ++HEQA P V     TS+ARHFP   L QEQ D+F+P LH+ +     + TL
Sbjct: 27   SSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEATL 86

Query: 1630 DWRRMNNAVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1451
            D  ++    SV ++     ++  +   + Q L  P +  + S   T  K   P + ESL 
Sbjct: 87   DRMQIETGASVHEDLDIDDFYPLVNGSKPQLLN-PDILDVFSSLQTGAKPSTPVTLESLT 145

Query: 1450 TEKTKTVGTKP 1418
            T   K +  +P
Sbjct: 146  TASNKHMDVEP 156


>ref|XP_010035966.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Eucalyptus grandis]
          Length = 563

 Score =  438 bits (1126), Expect = e-120
 Identities = 221/343 (64%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1171 LPKTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKI 992
            +PK PK  + G+ SS+  D  RK +++ FDP+DP+R+FLWGPETK+LLT KEE +L +KI
Sbjct: 219  VPK-PKDVITGNKSSKRLDAKRK-ANEGFDPNDPIRMFLWGPETKQLLTFKEESELILKI 276

Query: 991  QALMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVV 812
            Q L+KLE+VK +LQ Q GREPTL+EWAEA+G+ CRDLQS LHSG S REK+I AN RLVV
Sbjct: 277  QDLLKLEQVKTRLQSQSGREPTLLEWAEAIGITCRDLQSQLHSGYSCREKLINANLRLVV 336

Query: 811  HVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSR 632
            H+AKQ+Q RGLSL DLLQEGSMGLMKS+ KFKP+ GCRF+TY+YWWIRQT+R+AI QNSR
Sbjct: 337  HIAKQYQGRGLSLPDLLQEGSMGLMKSVGKFKPQAGCRFATYAYWWIRQTVRKAIFQNSR 396

Query: 631  IIRLPENVYALLTQIRNVRRLFIQEGHQ-PTNEELARRVGIRVEKLEMVLASARSPVSMQ 455
             IRLPENVYALL ++   +R  IQEGH+ P+ E++A+R GI V+KL+ ++++ R+P+S+Q
Sbjct: 397  TIRLPENVYALLGKVMEAKRSCIQEGHRLPSKEQVAKRAGISVDKLQNLVSTTRTPLSLQ 456

Query: 454  QSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDG 275
            Q VW D+  TFQEITAD   EIP++S +KQLMRRH+R+LL  LSP+E QII+LR+GI DG
Sbjct: 457  QPVWSDQDTTFQEITADTGVEIPDLSVSKQLMRRHVRSLLSTLSPKEGQIIKLRYGI-DG 515

Query: 274  GQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAY 146
            G+ ++LS IG++FGLSKERVRQLESRA+ KLK  L S GL AY
Sbjct: 516  GEQRSLSDIGNIFGLSKERVRQLESRAVYKLKQCLGSHGLHAY 558


>ref|XP_010035965.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Eucalyptus grandis]
          Length = 564

 Score =  438 bits (1126), Expect = e-120
 Identities = 221/343 (64%), Positives = 281/343 (81%), Gaps = 1/343 (0%)
 Frame = -3

Query: 1171 LPKTPKVDLHGDPSSRMTDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKI 992
            +PK PK  + G+ SS+  D  RK +++ FDP+DP+R+FLWGPETK+LLT KEE +L +KI
Sbjct: 220  VPK-PKDVITGNKSSKRLDAKRK-ANEGFDPNDPIRMFLWGPETKQLLTFKEESELILKI 277

Query: 991  QALMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVV 812
            Q L+KLE+VK +LQ Q GREPTL+EWAEA+G+ CRDLQS LHSG S REK+I AN RLVV
Sbjct: 278  QDLLKLEQVKTRLQSQSGREPTLLEWAEAIGITCRDLQSQLHSGYSCREKLINANLRLVV 337

Query: 811  HVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSR 632
            H+AKQ+Q RGLSL DLLQEGSMGLMKS+ KFKP+ GCRF+TY+YWWIRQT+R+AI QNSR
Sbjct: 338  HIAKQYQGRGLSLPDLLQEGSMGLMKSVGKFKPQAGCRFATYAYWWIRQTVRKAIFQNSR 397

Query: 631  IIRLPENVYALLTQIRNVRRLFIQEGHQ-PTNEELARRVGIRVEKLEMVLASARSPVSMQ 455
             IRLPENVYALL ++   +R  IQEGH+ P+ E++A+R GI V+KL+ ++++ R+P+S+Q
Sbjct: 398  TIRLPENVYALLGKVMEAKRSCIQEGHRLPSKEQVAKRAGISVDKLQNLVSTTRTPLSLQ 457

Query: 454  QSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHIRNLLCVLSPRERQIIRLRFGIQDG 275
            Q VW D+  TFQEITAD   EIP++S +KQLMRRH+R+LL  LSP+E QII+LR+GI DG
Sbjct: 458  QPVWSDQDTTFQEITADTGVEIPDLSVSKQLMRRHVRSLLSTLSPKEGQIIKLRYGI-DG 516

Query: 274  GQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGLEAY 146
            G+ ++LS IG++FGLSKERVRQLESRA+ KLK  L S GL AY
Sbjct: 517  GEQRSLSDIGNIFGLSKERVRQLESRAVYKLKQCLGSHGLHAY 559