BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00001961
         (2075 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,...   647   0.0  
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,...   638   e-180
ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,...   614   e-173
ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,...   612   e-172
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   610   e-171
ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,...   609   e-171
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   607   e-170
gb|AKC88737.1| sigma factor [Francoa sonchifolia]                     603   e-169
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   602   e-169
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   601   e-169
ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,...   599   e-168
ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,...   599   e-168
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   598   e-168
gb|AKC88745.1| sigma factor [Melianthus villosus]                     598   e-168
ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,...   595   e-167
ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,...   595   e-167
ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,...   591   e-166
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   589   e-165
ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,...   588   e-165
gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   588   e-165

>ref|XP_010266467.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 514

 Score =  647 bits (1670), Expect = 0.0
 Identities = 343/519 (66%), Positives = 406/519 (78%), Gaps = 4/519 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSS+S+TP+GL SRF+ H + L+RP  LAFKTDK+KD  LV+ HE IPLP+D P
Sbjct: 1    MGVVTVSSSSSQTPLGLSSRFSVHQTQLKRPLILAFKTDKAKDRALVTHHEPIPLPMDTP 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K+ +K LRR  TK ++R+K V +D AS CT ++DYN+ AAKLE+IYK SP  + S  +D+
Sbjct: 61   KENQKRLRRA-TKPSKRVKVVCSDEASSCTIEMDYNDVAAKLESIYKLSPPTDVSDVDDT 119

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + + ++RRR  K++ E D K  KE   NV+RNH            +ALRRK  +    + 
Sbjct: 120  DRVGRRRRRTRKKLGEADRKTGKESSDNVIRNHNKNKRLSLDRR-IALRRKKEEGAVQLS 178

Query: 1302 SVSR--RKDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKA 1129
             V    ++DGD    VD+LV  YS++TDL SLDWKKMKIPPVL SSEH+ LFKLMQPM A
Sbjct: 179  GVKEGSKEDGD----VDKLVGEYSVSTDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMNA 234

Query: 1128 LLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINK 949
            L Q+KE LH DLGREP+D ELAD+TN SV Q+RR IEVG AARN+LIKHNLRLVLFVINK
Sbjct: 235  LFQMKENLHRDLGREPTDGELADSTNMSVFQVRRCIEVGRAARNRLIKHNLRLVLFVINK 294

Query: 948  YYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTR 769
            Y+ E A+G KFQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+IMRS+T SSFTR
Sbjct: 295  YFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTLSSFTR 354

Query: 768  VPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARH 589
            V FGLESVR+EIQ+AKLEL+F+L R PT +EI+ KVGISP RY++V++ASK V SLH+RH
Sbjct: 355  VSFGLESVRVEIQRAKLELMFELERLPTEEEIIKKVGISPERYHEVIKASKPVFSLHSRH 414

Query: 588  AVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 409
            A+TQEEFINGITDI+GVGGDKRRQPA            LKPKESLVIRQRYGLDGKGDRT
Sbjct: 415  AITQEEFINGITDIEGVGGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 474

Query: 408  LGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            LGEIAGNLNISREMVRK+EVKALMKLKHPTRVDYLR +I
Sbjct: 475  LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 513


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  638 bits (1646), Expect = e-180
 Identities = 342/520 (65%), Positives = 407/520 (78%), Gaps = 5/520 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSAS--RTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPID 1663
            MGVVTVSSSAS  RTP GL ++F+ H +PLRRP  LAFK DK+K+  LV+PHE IPLPI+
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1662 APKDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPM-NASVAE 1486
              KD KK LRR  +K ++R+KAVSTD  SPC+ +LDYNEAAAKLENIYK SP  + S AE
Sbjct: 61   TSKDHKKRLRRA-SKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAE 119

Query: 1485 DSNHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
            D   +V++ R+  KR+   D+K EKE+  NVVR H           R+AL +  + +E+ 
Sbjct: 120  DLERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSK--MKQEKA 177

Query: 1308 MGSVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMK 1132
            + S+ +++D  +   N+D LV  YS +TDLVSLDWKKMKIPPVL  SEH+ LFKLMQPMK
Sbjct: 178  VASIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMK 237

Query: 1131 ALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVIN 952
             LL+VK+ L +DLGREP+D ELA+A + S +Q+RR++EVG AARNKLIKHNLRLVLFVIN
Sbjct: 238  GLLEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVIN 297

Query: 951  KYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFT 772
            KY+ E A+G KFQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+IMRS+T SSFT
Sbjct: 298  KYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFT 357

Query: 771  RVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHAR 592
            RV FGLESVR+EIQ+AKLELLF L R PT +EI+ KVGISP RY++VMRASK VLSLHAR
Sbjct: 358  RVSFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHAR 417

Query: 591  HAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 412
            HA TQEE+INGITD++GVGGD+ RQ A            LKPKESLV+RQRYGLDGKGDR
Sbjct: 418  HATTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDR 477

Query: 411  TLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            TLGEIAGNL+ISREMVRK+EVKALMKLKHP RVDYLR +I
Sbjct: 478  TLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYI 517


>ref|XP_011084487.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Sesamum indicum]
          Length = 518

 Score =  614 bits (1584), Expect = e-173
 Identities = 328/517 (63%), Positives = 396/517 (76%), Gaps = 2/517 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSA+RTP+GL +R+ T  S  RR   L+FK DK+K+  L++P ES+ LP++A 
Sbjct: 1    MGVVTVSSSAARTPLGLDARYLTRVSLCRRQVILSFKNDKNKNIALIAPRESVALPLEAK 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNA-SVAEDS 1480
            K+K+K  R+ K K  ER+ AVSTD ASP T DLDYNEAAAKLE IYKRSP    S+ E  
Sbjct: 61   KEKEKRSRKVK-KLVERVSAVSTDEASPSTIDLDYNEAAAKLEYIYKRSPATTVSLEEVK 119

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMVNVVRNHXXXXXXXXXXXRMALR-RKNVDKEEPMG 1303
            +  V++RR + KR  E +E ++K   +VVR+            R+AL+  K VD      
Sbjct: 120  DQRVKRRRPLRKRTGEAEEAEKKTADDVVRSKRKKERRLTLEKRIALKTNKEVDFLASSS 179

Query: 1302 SVSRRKDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALL 1123
               +++  D    +DRLV  YS +TDLVSLDWKKMKIPPVL SSEH+ LFKLMQPMKA+L
Sbjct: 180  QKRKQRKNDEDEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKAIL 239

Query: 1122 QVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYY 943
            QVKE L  DLGRE +D ELA+AT T+ +Q+R+ +EVG AARNKLIKHNLRLVLFV+NKY+
Sbjct: 240  QVKENLQNDLGREVTDDELAEATKTNAVQLRKQLEVGRAARNKLIKHNLRLVLFVMNKYF 299

Query: 942  HEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRVP 763
             + ++G +FQDLCQAG KGLI +IDRFE KR  RLSTY+LFWIRH+I+RS+T SSFT+V 
Sbjct: 300  QDFSNGPRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYSLFWIRHAIIRSMTLSSFTKVS 359

Query: 762  FGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHAV 583
            FGLESVR+EIQKAKLELLF+L R P+ +EIV++VGISP RY++VMR SK + SLHARHAV
Sbjct: 360  FGLESVRVEIQKAKLELLFELQRLPSDEEIVNRVGISPERYHEVMRVSKPISSLHARHAV 419

Query: 582  TQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 403
            TQEEFINGI+D+D V GDKRRQPA            LKPKESLVIRQRYGLDGKGDRTLG
Sbjct: 420  TQEEFINGISDVDDVEGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLG 479

Query: 402  EIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            EIAGNLNISREMVRK+EVKALMKLKHP R+DYLR +I
Sbjct: 480  EIAGNLNISREMVRKHEVKALMKLKHPARIDYLRRYI 516


>ref|XP_009785134.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana sylvestris]
          Length = 519

 Score =  612 bits (1578), Expect = e-172
 Identities = 334/520 (64%), Positives = 398/520 (76%), Gaps = 5/520 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASR+P+GL +RF+ H  PL+RP  ++FK DK+K + LV+P ESI LPI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSTRFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTD-GASPCTADLDYNEAAAKLENIYKRS-PMNASVAED 1483
            K+ +K  RR  +K TER+ AVS D  AS    +LDY+EAAAKLE+IYKRS   ++S  E 
Sbjct: 61   KENEKRSRRV-SKRTERVHAVSIDIEASTSPLELDYSEAAAKLESIYKRSLETDSSDTEA 119

Query: 1482 SNH-LVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
             +H +V++R+R  KRIVEGDE+ +K +  NVV+N            R+AL  KN + E  
Sbjct: 120  KDHQIVKRRQRTRKRIVEGDEETKKGIADNVVKNRRKKSKRLNLDQRIALL-KNKEGELV 178

Query: 1308 MGSVSRR-KDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMK 1132
              S  R  K+      +D+LV  YS ATDL SLDWKKMKIPPVL SSEH+ LFKLMQPMK
Sbjct: 179  ASSQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMK 238

Query: 1131 ALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVIN 952
            A+LQVKE L  DLGREP+DAE A+ATN    ++R+N+EVG AARNKLIKHNLRLVLFVIN
Sbjct: 239  AILQVKENLQNDLGREPTDAEAAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVIN 298

Query: 951  KYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFT 772
            KY+ + A+G KFQDLCQAG KGLI +IDRFE  R  RLSTY LFWIRH+I+RS+TTSSFT
Sbjct: 299  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFT 358

Query: 771  RVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHAR 592
            +VPFGLES+R+EIQKAKL+LLF+L R PT +EI+ +V +SP RY++VM+ SK V SLHAR
Sbjct: 359  KVPFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHAR 418

Query: 591  HAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 412
            H  TQEE INGITD+DGV GDKRRQPA            LKPKESLVIRQRYGLDGKGDR
Sbjct: 419  HMTTQEELINGITDVDGVDGDKRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 478

Query: 411  TLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            TLGEIAGNLNISREMVRK+EVKALMKLKHPTRVDYLR +I
Sbjct: 479  TLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 518


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  610 bits (1574), Expect = e-171
 Identities = 330/518 (63%), Positives = 399/518 (77%), Gaps = 3/518 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASR+P+GL SRF+T   PL+RP  ++FK DK+K++ L++P ESI L I+  
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSTRLCPLKRPVIVSFKKDKTKNTTLIAPKESISLSIETS 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNASV-AEDS 1480
            K+ +K  RR  +K +ER+ AV+ + ASP T +LDY+EAAAKLE+IYKRS   AS   E  
Sbjct: 61   KENEKRSRRV-SKRSERVHAVAIE-ASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQ 118

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            +HLV++R R  KRIVEGDE+ +KE+  NVV+N            R+AL  KN + E    
Sbjct: 119  DHLVKRRPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALL-KNKEGEMVAS 177

Query: 1302 SVSRR-KDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKAL 1126
            S  R+ K+      +D+LV  YS ATDL SLDWKKMKIPPVL SSEH  LFKLMQPMKA+
Sbjct: 178  SERRKLKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAI 237

Query: 1125 LQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKY 946
            LQVKE L  DLGREP+D E+A+ATN    ++R+ +EVG AARNKLIKHNLRLVLFV+NKY
Sbjct: 238  LQVKENLQNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKY 297

Query: 945  YHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRV 766
            + + A+G +FQDLCQAG KGLI +IDRFE  R  RLSTY LFWIRH+I+RS+TTSSFT+V
Sbjct: 298  FQDFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKV 357

Query: 765  PFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHA 586
            PFGLES+R+EIQKAKLELLF+L R PT +EI+ +VG+SP RY++VM+ SK V SLHAR+ 
Sbjct: 358  PFGLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNK 417

Query: 585  VTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 406
             TQEE INGITD+DGV GDKR+QPA            LKPKESLVIRQRYGLDGKGDRTL
Sbjct: 418  TTQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 477

Query: 405  GEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            GEIAGNLNISREMVRK+EVKALMKLKHPTRVDY+R +I
Sbjct: 478  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYI 515


>ref|XP_009601650.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Nicotiana tomentosiformis]
          Length = 519

 Score =  609 bits (1571), Expect = e-171
 Identities = 331/520 (63%), Positives = 400/520 (76%), Gaps = 5/520 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASR+P+GL + F+ H  PL+RP  ++FK DK+K + LV+P ESI LPI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSTSFSAHLCPLKRPVVVSFKKDKTKKTTLVAPKESISLPIETS 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTD-GASPCTADLDYNEAAAKLENIYKRS-PMNASVAED 1483
            K+ +K  RR  +K TER+ AVS D  ASP T +LDY+EAAAKLE+IYKRS   ++S  E 
Sbjct: 61   KENEKRSRRV-SKRTERVHAVSIDIEASPSTLELDYSEAAAKLESIYKRSLETDSSDTEA 119

Query: 1482 SNH-LVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
             +H +V++R+R  KRI+EG+E+ +K +  NVV+N            R+AL  KN + E  
Sbjct: 120  KDHQIVKRRQRTRKRIIEGNEEAKKGIADNVVKNRRKKSKRLNLDQRIALL-KNKEGELV 178

Query: 1308 MGSVSRR-KDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMK 1132
              S  R  K+      +D+LV  YS ATDL SLDWKKMKIPPVL SSEH+ LFKLMQPMK
Sbjct: 179  ASSQKRELKEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHAWLFKLMQPMK 238

Query: 1131 ALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVIN 952
            A+LQVKE L  DLGREP+DAE+A+ATN    ++R+N+EVG AARNKLIKHNLRLVLFVIN
Sbjct: 239  AILQVKENLQNDLGREPTDAEVAEATNIDASELRKNLEVGRAARNKLIKHNLRLVLFVIN 298

Query: 951  KYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFT 772
            KY+ + A+G KFQDLCQAG KGLI +IDRFE  R  RLSTY LFWIRH+I+RS+TTSSFT
Sbjct: 299  KYFQDFANGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFT 358

Query: 771  RVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHAR 592
            +VPFGLES+R+EIQKAKL+LLF+L R PT +EI+ +V +SP RY++VM+ SK V SLHAR
Sbjct: 359  KVPFGLESIRVEIQKAKLQLLFELQRMPTDEEIIERVRLSPERYHEVMKVSKPVFSLHAR 418

Query: 591  HAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 412
            H  TQEEFINGITD+DGV G KR+QPA            LKPKESLVIRQRYGLDGKG+R
Sbjct: 419  HMTTQEEFINGITDVDGVDGVKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNR 478

Query: 411  TLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            TLGEIAGNLNISREMVRK+EVKALMKLKHPTRVDYLR +I
Sbjct: 479  TLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYI 518


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  607 bits (1564), Expect = e-170
 Identities = 330/521 (63%), Positives = 395/521 (75%), Gaps = 5/521 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVV+VSSSA+RTP+GL ++F+T     RRP  +AFK DKS ++ LV+P E I LPI+  
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 1656 KDKKKILRRTKTKSTERL-KAVSTDGASPCTADLDYNEAAAKLENIYKRSPMN-ASVAED 1483
            K+  K  RR K K   ++   V TD  SPCT ++DYNEAAAKLENIYK SP   +S  E+
Sbjct: 61   KEHPK--RRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEE 118

Query: 1482 SNHLVQKRRRMSKRIVEGDEK--KEKEMVNVVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
                ++ RR+  KR  E DEK     + + VVRN            R+AL++    +E+P
Sbjct: 119  VEGKIKGRRQRRKRSKESDEKGVNSNDQI-VVRNQTNRIKRLSLDNRIALKKNR--EEKP 175

Query: 1308 MGSVSRRKDGD-ASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMK 1132
            + SV R+K  +  S  +DRLV  YS +TDLVSLDW+KMKIPPVL S EH+ LFKLMQPMK
Sbjct: 176  VVSVRRKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMK 235

Query: 1131 ALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVIN 952
            ALLQ KE L +DLGR+P++ ELA+ATN S  Q+R+++EVG AARNKLIKHNLRLVLF IN
Sbjct: 236  ALLQAKENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSIN 295

Query: 951  KYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFT 772
            KY+ + A+G +FQDLCQAG KGLI +IDRFE +R  RLSTY+LFWIRH+I+RS+T SSFT
Sbjct: 296  KYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFT 355

Query: 771  RVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHAR 592
            RV FGLESVR+EIQ+AKLELLF+L REPT +EI+ KVGISP RY +VMRASK V SLH+R
Sbjct: 356  RVSFGLESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSR 415

Query: 591  HAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 412
            H+VTQEEFINGITDIDGVGGD RRQPA            LKPKESLVIRQRYGLDGKGDR
Sbjct: 416  HSVTQEEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 475

Query: 411  TLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            TLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 476  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>gb|AKC88737.1| sigma factor [Francoa sonchifolia]
          Length = 513

 Score =  603 bits (1556), Expect = e-169
 Identities = 327/520 (62%), Positives = 396/520 (76%), Gaps = 4/520 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSS +R+P+GL ++F+TH   L+RPS ++ K DK+ +  LV+P E IPLPI  P
Sbjct: 1    MGVVTVSSSPARSPLGLSTKFSTHRCTLKRPSIVSLKADKTNNIALVAPQEQIPLPIQTP 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K ++K L R   K+++R+KAVSTD  SPCT +LD+NEAAAKLENIYK SP  + S  ED 
Sbjct: 61   KKQRKRLGRA-IKTSKRVKAVSTDVTSPCTLELDFNEAAAKLENIYKLSPPTDCSDTEDI 119

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + +  + R   KR+  GD+  EK    NVVRN            R++L R   +KE    
Sbjct: 120  DGMKSRHR---KRMNGGDDTGEKRTSDNVVRNRTKKVKRLSLDRRISLIR---NKEGDAD 173

Query: 1302 SVSRRK--DGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKA 1129
            S SR K    + +Y+VD LV  YS +TDLVSLDWKKMKIPPVLSS EH+ LFKLMQPMK 
Sbjct: 174  SSSRSKIDQKNENYSVDWLVREYSASTDLVSLDWKKMKIPPVLSSLEHAWLFKLMQPMKE 233

Query: 1128 LLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINK 949
            LLQ+KE LH+D  REP+D ELA+A N +V++MR++++VG AARNKLIKHNLRLVLFV+NK
Sbjct: 234  LLQLKENLHKDFSREPTDYELAEALNMNVIEMRKDMDVGRAARNKLIKHNLRLVLFVMNK 293

Query: 948  YYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTR 769
            Y+ + A+G +FQDLCQAG KGLI +IDRFE KR +RLSTY LFWIRH+I RSLT SSFTR
Sbjct: 294  YFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRVRLSTYGLFWIRHAITRSLTLSSFTR 353

Query: 768  VPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARH 589
            V FGLESVR+EIQ+AKLELLF+L R PT DEI+ KVGIS  RY++VMRA+K V SLHA+H
Sbjct: 354  VSFGLESVRVEIQRAKLELLFELHRLPTEDEIIEKVGISFERYHEVMRAAKPVYSLHAKH 413

Query: 588  AVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 409
             +T EEFIN +TD+DG+ GD+RRQPA            LKPKESLVIRQRYGLDGKGDRT
Sbjct: 414  MITHEEFINALTDVDGIHGDQRRQPALFRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 473

Query: 408  LGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            LGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 474  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLV 513


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial isoform X1 [Solanum
            lycopersicum]
          Length = 516

 Score =  602 bits (1552), Expect = e-169
 Identities = 326/519 (62%), Positives = 392/519 (75%), Gaps = 4/519 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASR+P+GL SRF+    PL+RP  ++FK D +K++ LVSP ESI  PI+  
Sbjct: 1    MGVVTVSSSASRSPLGLSSRFSARLCPLKRPVIVSFKKDITKNTTLVSPKESISSPIETS 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNASV-AEDS 1480
            K+ +K  RR  +K TER+ AV+ + A P T +LDY+EAAAKLE+IYKRS   AS   E  
Sbjct: 61   KENEKRSRRV-SKRTERVHAVTIE-APPSTLELDYSEAAAKLESIYKRSLETASPNTEVK 118

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            +HLV++R R  KRIVE DE+ +KE+V NVV+N            R+AL +    K   + 
Sbjct: 119  DHLVKRRPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKM--LA 176

Query: 1302 SVSRRK--DGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKA 1129
            S  RRK  +      +D+LV  YS ATDL SLDWKKMKIPPVL SSEH+ LFKLMQPMKA
Sbjct: 177  SSERRKLNEDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKA 236

Query: 1128 LLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINK 949
            +LQVKE L  DLGREP+D E+A+ATN    ++R+ +E G AARNKLIKHNLRLVLFV+NK
Sbjct: 237  ILQVKENLQNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNK 296

Query: 948  YYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTR 769
            Y+ + A+  +FQDLCQAG KGLI +IDRFE  R  RLSTY LFWIRH+I+R +TTSSFT+
Sbjct: 297  YFQDFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTK 356

Query: 768  VPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARH 589
            VPFGLES+R+EIQKAKLELLF+L R PT DEI+ +VG SP RY++VM+ SK + SLHAR+
Sbjct: 357  VPFGLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARN 416

Query: 588  AVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRT 409
              TQEE INGITD+DGV GDKR+QPA            LKPKESLVIRQRYGLDGKGDRT
Sbjct: 417  KTTQEELINGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRT 476

Query: 408  LGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            LGEIAGNLNISREMVRK+EVKALMKLKHPTRVDY+R +I
Sbjct: 477  LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRRYI 515


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  601 bits (1549), Expect = e-169
 Identities = 321/522 (61%), Positives = 394/522 (75%), Gaps = 6/522 (1%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASRTP+GL ++     S LR+P  +AFKTD++  + LV+P E IPLPI+  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNA--SVAED 1483
            K  +K L + + K  + +K+ +TD ASPCT ++DYNEAAAKLEN+YKRSP     S  ED
Sbjct: 61   KKHQKRLGKAR-KLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVED 119

Query: 1482 SNHLVQKRRRMSKRIVEGDEKKEKEMVN--VVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
             + L+++ R+  K+  E D  K++   +  VVRN            R+AL+      E+ 
Sbjct: 120  VDGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNK--DEKV 177

Query: 1308 MGSVSRRKDGDASYN--VDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPM 1135
            + S+ R++    + N  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQPM
Sbjct: 178  ISSIVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPM 237

Query: 1134 KALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVI 955
            K LL+VKE L +DLGREP++ ELA+ATN SV+Q+++++EVG AAR+KLIKHNLRLVLFV+
Sbjct: 238  KGLLEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVM 297

Query: 954  NKYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSF 775
            NKY+ + A+G KFQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSF
Sbjct: 298  NKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSF 357

Query: 774  TRVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHA 595
            TRV FGLESVR EIQKAKL +LF L R PT DEI+ KVGISP RY++VMRASK V SLH+
Sbjct: 358  TRVSFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHS 417

Query: 594  RHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 415
            RH  TQEEFINGITD+DGV GD R++PA            LKPKESLVIRQRYGLDGKGD
Sbjct: 418  RHTTTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGD 477

Query: 414  RTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            RTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 478  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 519


>ref|XP_011001910.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  599 bits (1545), Expect = e-168
 Identities = 327/519 (63%), Positives = 391/519 (75%), Gaps = 3/519 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVV+VSSSASRTP+GL ++F+T+ S  +RP  +AFK DKS +   V+PHE IPLPI+  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K KK++ +    KS+ RLKAV T+  SPCT  +DYNEAAAKLENIYK SP  + S  ED+
Sbjct: 61   KGKKRLGK--SKKSSNRLKAVRTE-VSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDA 117

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMVNV-VRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + ++++ R+  ++I EGD++ E     + VRN            R++LR KN  +E+ + 
Sbjct: 118  SGVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKN--EEKLVT 175

Query: 1302 SVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKAL 1126
            S  +RKD  + +  +D L+  YS +TDLVSLDWKKMKIPPVL+SSEH  LFKLMQPMKAL
Sbjct: 176  SAGKRKDRKNENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKAL 235

Query: 1125 LQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKY 946
            LQVKE L E+LGREP+D ELA AT   VLQ+R+ I VG AARNKLIKHNLRLVLFVI KY
Sbjct: 236  LQVKEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKY 295

Query: 945  YHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRV 766
            + + A+G KFQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSFTRV
Sbjct: 296  FQDFANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRV 355

Query: 765  PFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHA 586
             FGLES+R EIQKAKLEL F L R+P  DEI+ KV ISP RY++V RASK VLSLH+RH 
Sbjct: 356  SFGLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHK 415

Query: 585  VTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 406
             TQEEFI GI D+D  GGD RRQ A            LKPKESLV+RQRYGLDGKGDRTL
Sbjct: 416  TTQEEFIGGIADVD--GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTL 473

Query: 405  GEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            GEIAGNLNISREMVRK+EVKALMKLKHPTRVDYLR ++V
Sbjct: 474  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>ref|XP_012858574.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Erythranthe guttatus]
            gi|604299780|gb|EYU19623.1| hypothetical protein
            MIMGU_mgv1a020453mg [Erythranthe guttata]
          Length = 515

 Score =  599 bits (1545), Expect = e-168
 Identities = 322/517 (62%), Positives = 386/517 (74%), Gaps = 2/517 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVS+SASRT +GL  R+ T  S LRRP   AFK DK K  +L+SP ES  LP++A 
Sbjct: 1    MGVVTVSTSASRTSLGLNERYLTRVSILRRPVVFAFKNDKIKKIVLISPRESAALPLEAT 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNASVAEDSN 1477
            KD +K LR+ K K  ER+ AVSTD A P T DLDYNEAAAKLE I+K+SP    ++ D  
Sbjct: 61   KDNEKRLRKVK-KRAERVNAVSTDEAPPSTIDLDYNEAAAKLEYIFKQSP-TVEISVDEV 118

Query: 1476 HLVQKRRRMSKRIVEGDEKKEKEMVNVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMGSV 1297
              V+ +RR  ++  E  ++ EK   NVVR+            R+ALR K  D  E     
Sbjct: 119  KDVRVKRRQPRKRTEYADEAEKIADNVVRSRRSKDRRLNLEKRIALRTKKED--ESTAIF 176

Query: 1296 SRRKDG--DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALL 1123
             RRK G  D    +DRLV  YS ++DLVSLDWKKMKIPPVL S+EH  LFKLMQP+KA+L
Sbjct: 177  QRRKTGKNDEDEKIDRLVRDYSASSDLVSLDWKKMKIPPVLPSAEHVWLFKLMQPVKAIL 236

Query: 1122 QVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYY 943
             VKE +  +LGREP+D +LA A N   +Q+R+ +E+G AARNKLIKHNLRLVLFV+NKY+
Sbjct: 237  DVKETIENNLGREPTDEKLATAINMDTVQLRKQLEIGRAARNKLIKHNLRLVLFVMNKYF 296

Query: 942  HEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRVP 763
             + ++G +FQDLCQAGAKGLI +IDRFE KR LRLSTY LFWIRHSI+RS+T SSFT+V 
Sbjct: 297  QDFSNGSRFQDLCQAGAKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTKVS 356

Query: 762  FGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHAV 583
            FGLESVR+EI+KAKLEL+F+L R PT +EIV +VGIS  RY++VMR SK ++SLHARH+V
Sbjct: 357  FGLESVRVEIRKAKLELMFELKRLPTDEEIVGRVGISQERYHEVMRVSKPIISLHARHSV 416

Query: 582  TQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 403
            TQEEFINGITD+DGV GD+R+QPA            LKPKE+LVIRQRYGLDGKGDRTLG
Sbjct: 417  TQEEFINGITDVDGVEGDRRKQPALLRLALDDVLDSLKPKENLVIRQRYGLDGKGDRTLG 476

Query: 402  EIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHI 292
            EIAGNLNISREMVRKYEVKALMKLKH  RVDYLR ++
Sbjct: 477  EIAGNLNISREMVRKYEVKALMKLKHRARVDYLRRYV 513


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  598 bits (1542), Expect = e-168
 Identities = 326/519 (62%), Positives = 392/519 (75%), Gaps = 3/519 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVV+VSSSASRTP+GL ++F+T+ S  +RP  +AFK +KS ++ LV+PHE IPLP++  
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K KK++ +    KS+ RLKAV T+  SPCT  +DYNEAAAKLENIYK SP  + S  ED+
Sbjct: 61   KGKKRLGK--SKKSSNRLKAVRTE-VSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDA 117

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMVNV-VRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + ++++ R+  ++I EGD++ E     + VRN            R++LR KN  +E+ + 
Sbjct: 118  SGVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKN--EEKLVS 175

Query: 1302 SVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKAL 1126
            S  +RKD  + +  +D LV  YS +TDLVSLDWKKMKIPPVL+SSEH  LFKLMQPMKAL
Sbjct: 176  SAGKRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKAL 235

Query: 1125 LQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKY 946
            LQVKE L E+LG EP+D ELA ATN  VLQ+R+ I VG AARNKLIKHNLRLVLFVI KY
Sbjct: 236  LQVKEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKY 295

Query: 945  YHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRV 766
            + + A+G KFQD CQAG KGLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSFTRV
Sbjct: 296  FQDFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRV 355

Query: 765  PFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHA 586
             FGLES+R EIQKAKLEL F L R+P  DEI+ KV ISP RY++V RASK VLSLH+RH 
Sbjct: 356  SFGLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHK 415

Query: 585  VTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 406
             TQEEFI GI D+D  GGD RRQ A            LKPKESLV+RQRYGLDGKGDRTL
Sbjct: 416  TTQEEFIGGIADVD--GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTL 473

Query: 405  GEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            GEIAGNLNISREMVRK+EVKALMKLKHPTRVDYLR ++V
Sbjct: 474  GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>gb|AKC88745.1| sigma factor [Melianthus villosus]
          Length = 513

 Score =  598 bits (1541), Expect = e-168
 Identities = 327/521 (62%), Positives = 388/521 (74%), Gaps = 5/521 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            M VVTVSSS +R+P+GL ++ + H   L+RP  +AFKTDK  D  LV+PH+ IPLP+   
Sbjct: 1    MEVVTVSSSVARSPLGLSTKPSNHRCTLKRPLIVAFKTDKINDIALVAPHDQIPLPVANA 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K ++K L R  TK ++R K V  D +SPCT +LD+NEAAAKLENIYK SP  + S  E+ 
Sbjct: 61   KKQQKRLGRG-TKPSKRTKVVYADESSPCTLELDFNEAAAKLENIYKLSPPSDTSDVENQ 119

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMV-NVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + L+ + RR  +R   GD+  +K    NVVRN            R+AL R   D +    
Sbjct: 120  DGLMDRGRR--RRRNRGDDTTQKRTTDNVVRNQTKKVKRLSLDKRVALIRHKEDVD---- 173

Query: 1302 SVSRRKDGD---ASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMK 1132
             VSRR+  D    SYN++ LV  YS +TD+ SLDWKKMKIPPVLSSSEHS LFKLMQPMK
Sbjct: 174  -VSRRRKTDHKNKSYNIEILVREYSSSTDMASLDWKKMKIPPVLSSSEHSWLFKLMQPMK 232

Query: 1131 ALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVIN 952
             LL  KE L  DLGREP+D ELADATN +V+++++ +EVG AARNKLIKHNLRLVLFVIN
Sbjct: 233  GLLNFKENLKTDLGREPTDYELADATNMNVVKLKKEMEVGRAARNKLIKHNLRLVLFVIN 292

Query: 951  KYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFT 772
            KY+ + A+G +FQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+I RS+T SSFT
Sbjct: 293  KYFQDFANGSRFQDLCQAGVKGLITAIDRFEPKRKFRLSTYGLFWIRHAITRSMTLSSFT 352

Query: 771  RVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHAR 592
            RV FGLESVR EIQKAK ELLF L R PT +EI+ KVG+SP RY++V+RASK VLSLHA+
Sbjct: 353  RVSFGLESVRAEIQKAKFELLFRLQRLPTEEEIIEKVGVSPERYHEVLRASKPVLSLHAK 412

Query: 591  HAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 412
            H +TQEEFIN ITD+DGVG D+RRQPA            LKPKESLVIRQRYGLDGKGDR
Sbjct: 413  HMITQEEFINVITDVDGVGADQRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDR 472

Query: 411  TLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            TLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 473  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRPYLV 513


>ref|XP_009368680.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  595 bits (1534), Expect = e-167
 Identities = 319/522 (61%), Positives = 399/522 (76%), Gaps = 6/522 (1%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVS+SA+RTP+GL ++  +  SP R+P  +AFKTD+S  + LV+P   IPLPI+  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTA-DLDYNEAAAKLENIYKRSP-MNASV-AE 1486
            K  +K + + + K  + +K+ +TD A+PCT  ++DYNEAAAKLEN+YKRSP + A V  E
Sbjct: 61   KKHQKRIGKAR-KLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVE 119

Query: 1485 DSNHLVQKRRRMSKRIVEGDEKKEKEMVN--VVRNHXXXXXXXXXXXRMALRRKNVDKEE 1312
            D++ L+++ R+  K+  E D +KE++  +  VVR+            R+AL+      E+
Sbjct: 120  DADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNK--DEK 177

Query: 1311 PMGSVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPM 1135
             + SV +RKD  + +  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQPM
Sbjct: 178  VVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPM 237

Query: 1134 KALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVI 955
            K L +V+E L +DLG EP++ ELA+ATN SV+Q++++ EVG AARNKLIKHNLRLVLFVI
Sbjct: 238  KGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVI 297

Query: 954  NKYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSF 775
            NKY+ + A+G KFQDLCQAG +GLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSF
Sbjct: 298  NKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSF 357

Query: 774  TRVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHA 595
            TRV FGLESVR EIQKAKLE++F L R PT +EI+ KVGISP RY++VMRASK V SLH+
Sbjct: 358  TRVSFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHS 417

Query: 594  RHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 415
            RHA TQEE+INGITD+DGV GD RR+PA            LKPKESLVIRQRYGLDGKGD
Sbjct: 418  RHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGD 477

Query: 414  RTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            RTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 478  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_009357326.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
          Length = 519

 Score =  595 bits (1534), Expect = e-167
 Identities = 319/522 (61%), Positives = 400/522 (76%), Gaps = 6/522 (1%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVS+SA+RTP+GL ++  +  SP R+P  +AFKTD+S  + LV+P  +IPLPI+  
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTA-DLDYNEAAAKLENIYKRSP-MNASV-AE 1486
            K  +K + + + K  + +K+ +TD A+PCT  ++DYNEAAAKLEN+YKRSP + A V  E
Sbjct: 61   KKLQKRIGKAR-KLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVE 119

Query: 1485 DSNHLVQKRRRMSKRIVEGDEKKEKEMVN--VVRNHXXXXXXXXXXXRMALRRKNVDKEE 1312
            D++ L+++ R+  K+  E D +KE++  +  VVR+            R+AL+      E+
Sbjct: 120  DADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNK--DEK 177

Query: 1311 PMGSVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPM 1135
             + SV +RKD  + +  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQPM
Sbjct: 178  VVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPM 237

Query: 1134 KALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVI 955
            K L +V+E L +DLG EP++ ELA+ATN SV+Q++++ EVG AARNKLIKHNLRLVLFVI
Sbjct: 238  KGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVI 297

Query: 954  NKYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSF 775
            NKY+ + A+G KFQDLCQAG +GLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSF
Sbjct: 298  NKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSF 357

Query: 774  TRVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHA 595
            TRV FGLESVR EIQKAKLE++F L R PT +EI+ KVGISP RY++VMRASK V SLH+
Sbjct: 358  TRVSFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHS 417

Query: 594  RHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 415
            RHA TQEE+INGITD+DGV GD RR+PA            LKPKESLVIRQRYGLDGKGD
Sbjct: 418  RHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGD 477

Query: 414  RTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            RTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +IV
Sbjct: 478  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>ref|XP_008465379.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Cucumis melo]
          Length = 511

 Score =  591 bits (1523), Expect = e-166
 Identities = 316/518 (61%), Positives = 391/518 (75%), Gaps = 2/518 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSA+RTP  L ++F+ H S L+RPS +AFK DK  ++ LVSPHE + LP+++ 
Sbjct: 1    MGVVTVSSSAARTPFRLSAKFSNHGSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNASVAEDSN 1477
               KK    T +K  +R+KAV  D A+ C+ DLDYNEAAAKLENI+K SPM     EDS+
Sbjct: 61   NRSKKRSGNT-SKPLKRVKAVLIDEATSCSLDLDYNEAAAKLENIFKLSPMT----EDSD 115

Query: 1476 HLVQKRRRMSKRIVEGDEKKEKEMVN-VVRNHXXXXXXXXXXXRMALRRKNVDKEEPMGS 1300
              ++ +   SKR  +  +K +K   + +VRN            R+AL+ K   + +    
Sbjct: 116  --MESKDGRSKRGQQRSKKSDKRPSDGIVRNKTKRIKRLDLDKRIALKNKRKAERKSGSF 173

Query: 1299 VSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALL 1123
            +   K+  +    +DRLV  YS +TDLVSLDWKKMKIPPVL SSEH+ LFKL+QPMKAL+
Sbjct: 174  IKETKETKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALI 233

Query: 1122 QVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYY 943
            +V+E L ++LGREP++AELA+ATN +V+Q+RR +EVG AARNKLIKHNLRLVLFVINKY+
Sbjct: 234  EVQEELQKELGREPTEAELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYF 293

Query: 942  HEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRVP 763
             + A+G KFQDLCQAG KGLI +IDRFE KR  RLSTYALFWIRH+I+RS+T SSFTRV 
Sbjct: 294  EDFATGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVS 353

Query: 762  FGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHAV 583
            FGL+SVR+EIQ+AKLELL +L R PT +EI++KVGISP RY +VMRA+K V SLH+RH+ 
Sbjct: 354  FGLDSVRVEIQRAKLELLCELHRLPTEEEIIAKVGISPERYLEVMRATKPVYSLHSRHST 413

Query: 582  TQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLG 403
            T EE INGITD++G GGD RRQPA            LKPKESLVIRQRYGLDGKG+RTLG
Sbjct: 414  TSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLG 473

Query: 402  EIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            EIAGNLNISREMVRK+EVKALMKLKHP RVDYLR +++
Sbjct: 474  EIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYLI 511


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|641837169|gb|KDO56125.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837170|gb|KDO56126.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837171|gb|KDO56127.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
            gi|641837172|gb|KDO56128.1| hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
          Length = 513

 Score =  589 bits (1519), Expect = e-165
 Identities = 318/519 (61%), Positives = 388/519 (74%), Gaps = 3/519 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVT+SSS +R+P+GL +   +H S  +RP  +AFK DKS +  L SP E IPLPI+ P
Sbjct: 1    MGVVTISSSPARSPIGLST--ISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETP 58

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSP-MNASVAEDS 1480
            K  +K  R    K  ER+K V +D ASPCT D+DYNEAAAKLENIYK SP +  S  + +
Sbjct: 59   KRHQK-RRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYA 117

Query: 1479 NHLVQKRRRMSKRIVEGDEKKEKEMVN-VVRNHXXXXXXXXXXXRMALRRKNVDKEEPMG 1303
            + +V++ R+  KRI E ++K +      VVRN            R+ LR+   +++E + 
Sbjct: 118  DGVVKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRK---NEDEKVV 174

Query: 1302 SVSRRKDG-DASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKAL 1126
            + +R+ D  D    +++LV  YS +TDLVSLDWKKMKIPPVLSS+EH+ LFKLMQPMK  
Sbjct: 175  TKTRKTDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVF 234

Query: 1125 LQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKY 946
            +QVKE L +DLGREP+D ELA+ATN S  Q+++ +EVG AARNKLIKHNLRLVLFVI KY
Sbjct: 235  VQVKEQLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKY 294

Query: 945  YHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRV 766
            + + A+G +FQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSFTRV
Sbjct: 295  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 354

Query: 765  PFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHA 586
            PFGLESVR EIQ+AKLELLF+L R PT +EI+  V ISP RY +VM+ASK +LSLH+RH 
Sbjct: 355  PFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG 414

Query: 585  VTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 406
            VTQEEFINGITD+DGV  + +RQPA            LKPKESLVIRQR+GLDGKGDRTL
Sbjct: 415  VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTL 474

Query: 405  GEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            GEIAGNLNISREMVRK+EVK LMKLKHPTRVDYLR H+V
Sbjct: 475  GEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 513


>ref|XP_008234778.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Prunus mume]
          Length = 507

 Score =  588 bits (1517), Expect = e-165
 Identities = 317/522 (60%), Positives = 385/522 (73%), Gaps = 6/522 (1%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVVTVSSSASRTP+GL ++  +  S LR+P  +AFKTD++  + LV+P E IPLPI+  
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTSQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIEXX 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNA--SVAED 1483
                              K+ +TD ASPCT ++DYNEAAAKLEN+YKRSP     S  ED
Sbjct: 61   XXXXX-------------KSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVED 107

Query: 1482 SNHLVQKRRRMSKRIVEGDEKKEKEMVN--VVRNHXXXXXXXXXXXRMALRRKNVDKEEP 1309
             + L+++ R+  K+  E D  KE+   +  VVRN            R+ L+      E+ 
Sbjct: 108  VDGLMRRGRKRRKKTSESDADKEENRTSNTVVRNRTKKAKRLSLDKRVTLKWNK--DEKV 165

Query: 1308 MGSVSRRKDGDASYN--VDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPM 1135
            + S+ R++    + N  ++ LV  YS +TDLVSLDWKKMKIPPVL+SSEH+ LFKLMQPM
Sbjct: 166  IASIVRKRKSRKNENEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPM 225

Query: 1134 KALLQVKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVI 955
            K LL+VKE L +DLGREP++ ELA+ATN SV+Q+++++EVG AAR+KLIKHNLRLVLFV+
Sbjct: 226  KGLLEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVM 285

Query: 954  NKYYHEIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSF 775
            NKY+ + A+G KFQDLCQAG KGLI +IDRFE KR  RLSTY LFWIRH+I+RS+T SSF
Sbjct: 286  NKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSF 345

Query: 774  TRVPFGLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHA 595
            TRV FGLESVR EIQKAKL +LF L R PT DEI+ KVGISP RY++VMRASK V SLH+
Sbjct: 346  TRVSFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHS 405

Query: 594  RHAVTQEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGD 415
            RH  TQEEFINGITD+DGV GD R++PA            LKPKESLVIRQRYGLDGKGD
Sbjct: 406  RHTTTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGD 465

Query: 414  RTLGEIAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            RTLGEIAGNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 466  RTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 507


>gb|KHG11410.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 516

 Score =  588 bits (1516), Expect = e-165
 Identities = 312/517 (60%), Positives = 381/517 (73%), Gaps = 1/517 (0%)
 Frame = -3

Query: 1836 MGVVTVSSSASRTPVGLGSRFATHSSPLRRPSFLAFKTDKSKDSILVSPHESIPLPIDAP 1657
            MGVV+VSSSA+RTPVGLG++F+T     RRP  +AFK DKS ++ LV+  +   LP++  
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIMAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 1656 KDKKKILRRTKTKSTERLKAVSTDGASPCTADLDYNEAAAKLENIYKRSPMNASVAEDSN 1477
            K+  K   + K K+++ +    TD  SP T D+DYNEAAAKLENIYK SP   +  E  +
Sbjct: 61   KEHPKRRGKAK-KASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGS 119

Query: 1476 HLVQKRRRMS-KRIVEGDEKKEKEMVNVVRNHXXXXXXXXXXXRMALRRKNVDKEEPMGS 1300
                K R +  KR  E D K +     +V              +    +KN +++  +  
Sbjct: 120  EGETKGRHLRRKRSTESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSG 179

Query: 1299 VSRRKDGDASYNVDRLVNGYSIATDLVSLDWKKMKIPPVLSSSEHSLLFKLMQPMKALLQ 1120
             S++   + S  +DRLV  YS +TDLVSLDWKKMKIPPVL S+EH+ LFKLMQPMKALL+
Sbjct: 180  QSKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 1119 VKEALHEDLGREPSDAELADATNTSVLQMRRNIEVGHAARNKLIKHNLRLVLFVINKYYH 940
             KE L +DLGR+P++ ELA+ATN+S  Q+RR +EVG AARNKLIKHNLRLVLFVINKY+ 
Sbjct: 240  AKENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFQ 299

Query: 939  EIASGQKFQDLCQAGAKGLIISIDRFELKRGLRLSTYALFWIRHSIMRSLTTSSFTRVPF 760
            + A+G +FQDLCQAG KGLI +IDRFE +R  RLSTY LFWIRH+I+RS+T SSFTRV F
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 359

Query: 759  GLESVRLEIQKAKLELLFDLGREPTVDEIVSKVGISPARYYDVMRASKQVLSLHARHAVT 580
            GLESVR+EIQ+AKLELLF+L REPT DE++ +VGISP RY +VMRASK V SLH RH+VT
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVT 419

Query: 579  QEEFINGITDIDGVGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 400
            QEEFI+GITD+DGVGGD RRQPA            LKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 420  QEEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 399  IAGNLNISREMVRKYEVKALMKLKHPTRVDYLRHHIV 289
            I+GNLNISREMVRK+EVKALMKLKHP RVDYLR ++V
Sbjct: 480  ISGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516