BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00001095
         (4438 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s...  2016   0.0  
ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III s...  1927   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1910   0.0  
ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III s...  1884   0.0  
ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III s...  1853   0.0  
ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III s...  1841   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1832   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1827   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1816   0.0  
ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1813   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1808   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1808   0.0  
ref|XP_011081084.1| PREDICTED: DNA-directed RNA polymerase III s...  1807   0.0  
ref|XP_009800353.1| PREDICTED: DNA-directed RNA polymerase III s...  1807   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1805   0.0  
ref|XP_009610317.1| PREDICTED: DNA-directed RNA polymerase III s...  1803   0.0  
ref|XP_008669237.1| PREDICTED: DNA-directed RNA polymerase III s...  1801   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1801   0.0  
ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III s...  1800   0.0  
ref|XP_009610319.1| PREDICTED: DNA-directed RNA polymerase III s...  1797   0.0  

>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
            nucifera]
          Length = 1392

 Score = 2016 bits (5223), Expect = 0.0
 Identities = 1012/1400 (72%), Positives = 1184/1400 (84%), Gaps = 18/1400 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  + FTKEPYIEDVGP+K+KSIRF+M SG EI K  EVQV+RS  YD  RKPI+ 
Sbjct: 1    MANTQDRMLFTKEPYIEDVGPRKIKSIRFSMFSGDEIRKAAEVQVWRSVYYDVNRKPIDD 60

Query: 4118 GLLDPRMGPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCA 3942
            GLLD RMGP  K+  CTTCD SF DCPGHFGYL LALPVFNVGYF TI++ILKCICKSCA
Sbjct: 61   GLLDSRMGPASKSGICTTCDGSFTDCPGHFGYLNLALPVFNVGYFSTILDILKCICKSCA 120

Query: 3941 RILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVK 3783
            RILL E++   YLK MR  K + LQKN L+K+I+ +C       K  +C RCG+ING VK
Sbjct: 121  RILLEEEKRKDYLKKMRSSKADALQKNNLMKQIVKKCTTMLSSKKALKCTRCGYINGFVK 180

Query: 3782 KANSI------LGIAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKK 3621
            K  SI      LGI HD SKV+D SLEEC  A+S +K+S+A++  V+VL+P R+LALFK+
Sbjct: 181  KGASISGTGSTLGIVHDRSKVNDESLEECSSAISHKKESKASFRVVHVLNPVRILALFKR 240

Query: 3620 MLDKDCELLYLYDRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNAT 3441
            M+D+DCELLYLYDRPEKLIITDIAVPP+AIRPS+FMDAG+ SNEDDIT+KL +I+++NA 
Sbjct: 241  MVDEDCELLYLYDRPEKLIITDIAVPPIAIRPSVFMDAGTMSNEDDITSKLSAIIRANAP 300

Query: 3440 LQESLQGGLHNFP--IHWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRF 3267
            L++ LQG        + W+ LQ+ VAQYINS+VRG+P ++ PSKP RGFVQR+KGKQGRF
Sbjct: 301  LRQDLQGANPKSKCLLDWDQLQIEVAQYINSDVRGIPTSMQPSKPLRGFVQRLKGKQGRF 360

Query: 3266 RGNLSGKRVEFTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGP 3087
            RGNLSGKRVE+TGRTVISPDPNLKITEVAIPILMAQILTYPERVS++NIEKLRQCVRNG 
Sbjct: 361  RGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSHHNIEKLRQCVRNGS 420

Query: 3086 KKYPGANFVLTPDGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSI 2907
            +KYPGANF+  PDGS +NL +  RKR ADELKYGY VERHLE GDIVLFNRQPSLHRMSI
Sbjct: 421  QKYPGANFIRYPDGSIMNLRFSARKRAADELKYGYIVERHLEDGDIVLFNRQPSLHRMSI 480

Query: 2906 MSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPK 2727
            MSHRARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK
Sbjct: 481  MSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK 540

Query: 2726 NGEILVASTQDFLTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWT 2547
            NG ILVASTQDFLTS+FLITRKDTFYDRAAF LMCSYMGDGMDP+DLP+PA++KP+ELWT
Sbjct: 541  NGAILVASTQDFLTSAFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWT 600

Query: 2546 GKQLFSVLVRPHSHMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLG 2367
            GKQLFSVLVRPH+HM+VY+NLTV+E++C+K +ETMCP D +VYFRNSELICGQLGKATLG
Sbjct: 601  GKQLFSVLVRPHAHMRVYLNLTVLEKNCVKQKETMCPNDGFVYFRNSELICGQLGKATLG 660

Query: 2366 NGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKT 2187
            NGNKDGLFSVLLRDYNAHAAASCMNR+AKLSARWIGNHGFSIGIDDVQPGE L +KK +T
Sbjct: 661  NGNKDGLFSVLLRDYNAHAAASCMNRIAKLSARWIGNHGFSIGIDDVQPGELLKDKKKET 720

Query: 2186 IEKGYWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNS 2007
            IE GY  CD LI  YN+G L  +PGCDAAQTLEA+I+  LN+IREETA VC+  LHWRNS
Sbjct: 721  IEDGYKACDELIHSYNKGNLELEPGCDAAQTLEAQITRKLNEIREETAAVCMQELHWRNS 780

Query: 2006 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVAN 1827
            PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFI+RSLPHFPR SKTPAAKGFVAN
Sbjct: 781  PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVAN 840

Query: 1826 SFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGN 1647
            SFY+GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDL+ YYDDTVR++SG 
Sbjct: 841  SFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLAVYYDDTVRNASGG 900

Query: 1646 VVQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLS 1467
            VVQ +YGDDG+DPA MEGK G PLNL R++ K KATCP +G  A+L  S+I + +D+R+S
Sbjct: 901  VVQFLYGDDGLDPANMEGKKGIPLNLERVYLKTKATCP-SGTNASLCPSEIVKILDDRIS 959

Query: 1466 KHDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENV 1287
            ++DMT +GGC  AF+K L DF+  RI+ L NTR+ALGLD++  +       +   +LE++
Sbjct: 960  RYDMTPDGGCSSAFKKLLVDFIQNRISILRNTRKALGLDEEYAKK------DNSDILEHI 1013

Query: 1286 AAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1107
            AA ISGI+++QL+VFL++CISRYH KR+EAG AIGAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1014 AANISGITTQQLKVFLETCISRYHLKRIEAGAAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1073

Query: 1106 SMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNL 927
            SMNVTLGVPRIKEIIN +K ISTPIITA L CDD+ K+A++VKG IEKT L EVAKS+ +
Sbjct: 1074 SMNVTLGVPRIKEIINGAKNISTPIITATLECDDNVKSARIVKGCIEKTVLGEVAKSIKI 1133

Query: 926  IVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPP 747
            ++T R+A + + LD+ +IEA Q+KI A +VK+SIL+H   K K + I V   YKL V P 
Sbjct: 1134 VMTQRQASIVISLDMARIEAAQLKISADSVKESILKHLNPKFKPK-IVVDKGYKLIVIPT 1192

Query: 746  VVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKE-EYCLLVEGTNLLAVMGSPGV 570
              DRSKL F+L N+KA+LP VI+KGI  V+RAVI+ +K+ +Y LLVEGTNLL VMG+PGV
Sbjct: 1193 ESDRSKLHFELHNLKAVLPQVIVKGISTVQRAVINKSKDGKYNLLVEGTNLLGVMGTPGV 1252

Query: 569  YGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVL 390
             G KT SNHI+EV  TLGIEAAR+ I+DEIQYTM  HGM IDIRHMMLLAD+MTYKGEVL
Sbjct: 1253 DGCKTTSNHIIEVQGTLGIEAARRCIIDEIQYTMGKHGMDIDIRHMMLLADLMTYKGEVL 1312

Query: 389  GITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILK 210
            GITR  + KMK+SVLMLASFE+TA+HLF AS+ GR +KI+G SEC+I+G+PMQ+G+GILK
Sbjct: 1313 GITRTGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIILGIPMQIGTGILK 1372

Query: 209  VKQKY-ELRELAYGPAPIIS 153
            V Q+Y ++ +L+Y P PIIS
Sbjct: 1373 VIQRYPQVPQLSYKPDPIIS 1392


>ref|XP_010907843.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Elaeis
            guineensis]
          Length = 1369

 Score = 1927 bits (4993), Expect = 0.0
 Identities = 974/1375 (70%), Positives = 1142/1375 (83%), Gaps = 4/1375 (0%)
 Frame = -3

Query: 4268 TKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRMG-P 4092
            TKEPYIEDVGP+K+KSIRF+  SG EI K  EVQV+ + +YD   KPIE+GLLDPRMG P
Sbjct: 8    TKEPYIEDVGPRKIKSIRFSTFSGEEIRKLAEVQVWNNRIYDLNLKPIENGLLDPRMGAP 67

Query: 4091 VKNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEKECI 3912
             +  EC TC  +F DCPGHFGYLKL LPVFNVGYF +I+ ILKCICK C RILL E    
Sbjct: 68   NRQTECATCHGNFTDCPGHFGYLKLTLPVFNVGYFNSILNILKCICKGCGRILLDETLRK 127

Query: 3911 AYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILGIAHDLSKVSD 3732
            +YLK MR PK ++ QKNAL+K +  +CKPSRC RCG+ NG VKKA S L    D SK +D
Sbjct: 128  SYLKKMRNPKADIFQKNALMKMVRDKCKPSRCLRCGYANGVVKKARSGLYFIQDFSKTAD 187

Query: 3731 GSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYDRPEKLIITDI 3552
             S+EE R A+S  KD + ++   +VL    VL+LF+KMLD+DCELL LYDRPEKLI+T I
Sbjct: 188  PSVEEFRSALSHTKD-KTSFQVSHVLSAVAVLSLFRKMLDEDCELLNLYDRPEKLIVTHI 246

Query: 3551 AVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFPIH--WEMLQV 3378
            AVPPV+IRPS+ +D+G +SNED+IT+ L +I+ +N+ L+E L+G    F     W  LQ+
Sbjct: 247  AVPPVSIRPSVIVDSGRSSNEDNITSILKNIINTNSILREDLEGAAPPFKCLDCWTHLQI 306

Query: 3377 YVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 3198
             V +YINSE     A   P    RG VQR+KGKQGRFRGNLSGKRVEFTGRTVISPDPNL
Sbjct: 307  QVVEYINSE-----APCIPDSKHRGLVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 361

Query: 3197 KITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPDGSKLNLSYGN 3018
            KITEVAIPILMA++LTYPERVSNYNIEKLRQ VRNGP KYPGANFVL PDGSK++L Y +
Sbjct: 362  KITEVAIPILMARVLTYPERVSNYNIEKLRQLVRNGPSKYPGANFVLRPDGSKVHLRYVD 421

Query: 3017 RKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2838
            ++ +A+ELKYGY VERHLE GDIVLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPY
Sbjct: 422  KRDIANELKYGYVVERHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 481

Query: 2837 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2658
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD
Sbjct: 482  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 541

Query: 2657 TFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHSHMKVYVNLTV 2478
            TFYDRAAF LMCSYMGD MDPIDLP+PA++KP+ELWTGKQLF+VL+RP+++ +V++NL V
Sbjct: 542  TFYDRAAFSLMCSYMGDAMDPIDLPTPAIIKPIELWTGKQLFNVLIRPNANTRVFLNLIV 601

Query: 2477 MERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYNAHAAASC 2298
             E+   K+ ETMCP D  VYFRNSELICGQLGKATLGNGNKDGLF+VLLRDYN HAAASC
Sbjct: 602  KEKIYSKS-ETMCPNDGCVYFRNSELICGQLGKATLGNGNKDGLFAVLLRDYNPHAAASC 660

Query: 2297 MNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLILDYNEGKLRPQ 2118
            MNRLAKLSARWIGNHGFSIGIDDVQPGE+LN++K K I +GY  C G I  Y++G+L  Q
Sbjct: 661  MNRLAKLSARWIGNHGFSIGIDDVQPGENLNQQKRKKINEGYRECHGHISSYSKGELILQ 720

Query: 2117 PGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSPINISQMIACV 1938
            PGC+AAQTLE KI+G LN+IR    NVC+N LHWRNSPLIMSQCGSKGSPINISQM+ACV
Sbjct: 721  PGCNAAQTLELKITGVLNQIRATAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVACV 780

Query: 1937 GQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLV 1758
            GQQSVGGRRAPNGFI+R+LPHFP +SKTPAAKGFVANSFY+GLT TEFFFHTMGGREGLV
Sbjct: 781  GQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTPTEFFFHTMGGREGLV 840

Query: 1757 DTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDPAQMEGKSGTP 1578
            DTAVKTAETGYMSRRLMK LEDLS YYD TVR +SG++VQ +YGDDGMDPA+MEGK G P
Sbjct: 841  DTAVKTAETGYMSRRLMKGLEDLSIYYDQTVRTASGSIVQFVYGDDGMDPAKMEGKDGIP 900

Query: 1577 LNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDAFRKSLSDFLC 1398
            LNL +LF KI ATCP      TL  ++I   +D+RLSK+DMT EGGC  +F+K LSDFL 
Sbjct: 901  LNLDQLFMKIMATCPLR-EQDTLSPAEILHIMDDRLSKYDMTPEGGCSASFKKMLSDFLH 959

Query: 1397 ERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQLQVFLDSCISRY 1218
            +R+  L N RRAL LD++ +Q     +Y+   VLE+VAA ISGIS++QLQVFL++CISRY
Sbjct: 960  KRVAALCNIRRALQLDENHLQK---QDYS---VLESVAANISGISAKQLQVFLETCISRY 1013

Query: 1217 HAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKRIST 1038
            H K++EAG AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINA+K IST
Sbjct: 1014 HLKKIEAGGAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNIST 1073

Query: 1037 PIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVKLDVEKIEALQM 858
            PIITA L+ D D  +A++V+  ++KT L EVAK++ +++ S + ++ VKLD+E+IEAL M
Sbjct: 1074 PIITATLVSDRDVLSARMVRSSLQKTVLGEVAKAIKIVLKSSQPYIVVKLDMERIEALHM 1133

Query: 857  KIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLLNIKAMLPNVII 678
            +I +++V+Q+IL H KTK+K EHI+V+G  KL+++PP  DRSKL F+L ++KA+LP VI+
Sbjct: 1134 RISSQSVQQAILNHPKTKLKPEHIRVLGNNKLKIYPPEADRSKLQFELHSLKAVLPKVIV 1193

Query: 677  KGIPDVERAVISIAKEEYCLLVEGTNLLAVMGSPGVYGSKTKSNHILEVSRTLGIEAARQ 498
            KGI  VERAVI+ A   Y LLVEGTNLLAVMG+PG+ GSKTKSNHI+EV +T+GIEAARQ
Sbjct: 1194 KGIATVERAVINHANGVYNLLVEGTNLLAVMGTPGIDGSKTKSNHIIEVQQTIGIEAARQ 1253

Query: 497  TIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITRFDLPKMKDSVLMLASFEQTA 318
             I++EIQYTM +HGMSID RHMMLLAD+MTY+GEVLGITRF + KMKDSVLMLASFE+TA
Sbjct: 1254 CIINEIQYTMRNHGMSIDARHMMLLADLMTYRGEVLGITRFGISKMKDSVLMLASFEKTA 1313

Query: 317  EHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQKYE-LRELAYGPAPII 156
            EHLF AS  GR ++I+G SEC+IMG+PMQLG+GILKV+Q+ E L EL Y P PII
Sbjct: 1314 EHLFNASYSGRNDQIEGVSECIIMGIPMQLGTGILKVRQRVEQLPELKYRPDPII 1368


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
            vinifera]
          Length = 1383

 Score = 1910 bits (4949), Expect = 0.0
 Identities = 968/1392 (69%), Positives = 1153/1392 (82%), Gaps = 14/1392 (1%)
 Frame = -3

Query: 4286 KPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLD 4107
            K  I FTKEPYIEDVGP+K++SIRF + S SEI+K  EVQV+R   YD  RKPIE+GLLD
Sbjct: 2    KDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLD 61

Query: 4106 PRMGPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILL 3930
            PRMGP  KN  C TC  +F DCPGH GYL LALPV+NVGY  TI++ILKCICKSC+R+LL
Sbjct: 62   PRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLL 121

Query: 3929 SEKECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANS 3771
             EK    YLK MR  K+E L+K  L+KKI+ +C       K  +C RCG++NG VKKA S
Sbjct: 122  DEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVS 181

Query: 3770 ILGIAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLY 3591
            +LGI HD SK++DGSLEEC  A+S  K+S+A+++ V++L+P +VL+LFK+M+D+DC+LL 
Sbjct: 182  VLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLN 241

Query: 3590 LYDRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQ--GG 3417
            L +RPEKL++T+I VPP+AIRPS+FMD G+ SNE+D+T +L  I+Q+NA+L + LQ  G 
Sbjct: 242  LAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGS 301

Query: 3416 LHNFPIHWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVE 3237
                   W+ LQ+ VAQYINS+VRGVP  +  ++P  GFVQR+KGKQGRFRGNLSGKRVE
Sbjct: 302  TSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVE 361

Query: 3236 FTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVL 3057
            +TGRTVISPDPNLKITEVAIPILMA+IL+YPERVS++NIEKLRQC+ NGP KYPGA  + 
Sbjct: 362  YTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIR 421

Query: 3056 TPDGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPW 2877
             PDGS  +L +  RKR ADELKYGY VERHLE GD+VLFNRQPSLHRMSIM HRARIMPW
Sbjct: 422  YPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 481

Query: 2876 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 2697
            RTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ
Sbjct: 482  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 541

Query: 2696 DFLTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVR 2517
            DFLTSSFLITRKDTFYDRAAF LMCSYMGDGMD +DLP+PA++KPVELWTGKQLF+VL+R
Sbjct: 542  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLR 601

Query: 2516 PHSHMKVYVNLTVMERDCMKNR--ETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLF 2343
            PH++++VY+NLTVME+   K R  ETMCP D +VYFRNSELI GQLGKATLGNGNKDGLF
Sbjct: 602  PHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLF 661

Query: 2342 SVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVC 2163
            SVLLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG  LN++K K IE+GY  C
Sbjct: 662  SVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENC 721

Query: 2162 DGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCG 1983
              LI  YN+GKL+ QPGC+AAQTLEA+I+G LNKIRE TANVC+  LHWRNSPLIMSQCG
Sbjct: 722  HELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCG 781

Query: 1982 SKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTA 1803
            SKGSPINISQMIACVGQQSVGGRRAP+GFI+R+LPHFPR SKTP AKGFVA+SFY+GLTA
Sbjct: 782  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTA 841

Query: 1802 TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGD 1623
            TEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDLS  YD+TVR+++G++VQ +YGD
Sbjct: 842  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGD 901

Query: 1622 DGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEG 1443
            DGMDPA+MEGK G PLN  RLF K+KATCPA G  A+L    IE+ + +RL +H+ + E 
Sbjct: 902  DGMDPARMEGKDGFPLNFNRLFLKVKATCPA-GENASLSALQIEETV-KRLKEHNTSAE- 958

Query: 1442 GCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGIS 1263
            GC DAF+ +LS FL E   K  NTR ALGL  + +      E NL  + E  A  ISGI+
Sbjct: 959  GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHV-----GEENL-DIQEKFAKNISGIT 1012

Query: 1262 SRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1083
            S+QLQVFLD+CISRY  KR+EAGTAIGAIGA SIGEPGTQMTLKTFHFAGVASMNVTLGV
Sbjct: 1013 SKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGV 1072

Query: 1082 PRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAF 903
            PRIKEIIN +KRISTPIITA L C+++ KTA++VKG IE+T L +VAKS+ +++TSR A 
Sbjct: 1073 PRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLAL 1132

Query: 902  VRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLL 723
            + V LD+E I+A Q+ ID+  V++SIL++ + K+K++HIKV+   KLEVHP   DRS + 
Sbjct: 1133 IAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQ-GDRSTIH 1191

Query: 722  FQLLNIKAMLPNVIIKGIPDVERAVIS-IAKEEYCLLVEGTNLLAVMGSPGVYGSKTKSN 546
            F+L  +K +LP V++KGI  VERAVI+   K +Y LLVEGT L  VMG+ GV G +T SN
Sbjct: 1192 FELHALKNLLPTVVVKGIETVERAVINKDNKVKYNLLVEGTGLQTVMGTEGVIGRETTSN 1251

Query: 545  HILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITRFDLP 366
            HI+EV +TLGIEAAR+ I++EIQYTM+SHGMSIDIRHMMLLAD+MT++GEVLGITRF + 
Sbjct: 1252 HIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFGIQ 1311

Query: 365  KMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQK-YEL 189
            KM  SVLMLASFE+TA+HLF AS+ GR +KI+G SEC+IMG+PMQLG+GILKV+Q+  ++
Sbjct: 1312 KMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQV 1371

Query: 188  RELAYGPAPIIS 153
             EL+YG  PIIS
Sbjct: 1372 PELSYGLDPIIS 1383


>ref|XP_009402242.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Musa
            acuminata subsp. malaccensis]
          Length = 1372

 Score = 1884 bits (4881), Expect = 0.0
 Identities = 954/1376 (69%), Positives = 1122/1376 (81%), Gaps = 4/1376 (0%)
 Frame = -3

Query: 4268 TKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRMGPV 4089
            TKEPYIEDVGPQ++KSIRF+  SG EI K  EVQV+ + +Y    +P+E+GLLDP+MG  
Sbjct: 11   TKEPYIEDVGPQRIKSIRFSTFSGEEIKKLAEVQVWNNRIYGIDLRPVENGLLDPKMGAA 70

Query: 4088 -KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEKECI 3912
             K   C TC  +F +CPGHFGYLKL LPVFNVG+F +I+ +LKCICK+CARILL E +  
Sbjct: 71   NKAGVCATCHGNFTECPGHFGYLKLTLPVFNVGFFNSILNVLKCICKACARILLLENDRR 130

Query: 3911 AYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILGIAHDLSKVSD 3732
             +LK MR PK ++  KNAL+KKI  +CK S CP CG  NG VKKA S   IAHD S+  D
Sbjct: 131  IFLKKMRNPKADIFMKNALMKKIRDKCKISICPWCGSRNGVVKKARSSFAIAHDFSRSVD 190

Query: 3731 GSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYDRPEKLIITDI 3552
             S+E  R A+S  K +++++  V+VL P  VL+LFK+M+D+DCELL LYDRP+KLI+T I
Sbjct: 191  ESIEVVRAALSHIK-AKSSFQIVHVLSPVTVLSLFKRMVDEDCELLNLYDRPDKLIVTTI 249

Query: 3551 AVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFPIH--WEMLQV 3378
            AVPPVA+RPS+F+D G +SNED ITT L +I+ +N+ L+E L+G    F     W  LQ+
Sbjct: 250  AVPPVAVRPSVFVDFGKSSNEDSITTILKNIINTNSILREDLEGAAPPFKCLDCWAHLQI 309

Query: 3377 YVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 3198
             V +YINSE   VP         RG +QR+KGKQGRFRGNLSGKRVEFTGRTVISPDPNL
Sbjct: 310  QVVEYINSEAPSVP-----DSKHRGLIQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNL 364

Query: 3197 KITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPDGSKLNLSYGN 3018
            KITEVAIP+LMA+ LTYPERVS YNIEKLRQ + NGP KYPGANF+L  DG+K +L Y +
Sbjct: 365  KITEVAIPVLMAKKLTYPERVSAYNIEKLRQRICNGPDKYPGANFILLGDGTKQHLRYVD 424

Query: 3017 RKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPY 2838
            +K  A ELKYGY VERHLE GD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPY
Sbjct: 425  KKTAASELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPY 484

Query: 2837 NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 2658
            NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD
Sbjct: 485  NADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKD 544

Query: 2657 TFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHSHMKVYVNLTV 2478
            TFYDRAAF LMCSYMGD MDPIDLPSPA++KP+ELWTGKQLFSVL+RP++  KV++NL V
Sbjct: 545  TFYDRAAFSLMCSYMGDSMDPIDLPSPAIIKPIELWTGKQLFSVLIRPNARTKVFLNLMV 604

Query: 2477 MERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYNAHAAASC 2298
             E+   K+ ETMCP D YVYFRNSELICGQLGK TLGNGNKDGLFSVLLRDYN+HAAASC
Sbjct: 605  KEKIYTKS-ETMCPSDGYVYFRNSELICGQLGKVTLGNGNKDGLFSVLLRDYNSHAAASC 663

Query: 2297 MNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLILDYNEGKLRPQ 2118
            MNRLAKLSARWIGNHGFSIGIDDVQPGE LN++K K I++GY  C  LI  Y +GKL  Q
Sbjct: 664  MNRLAKLSARWIGNHGFSIGIDDVQPGEHLNQQKKKKIDEGYRECHELISLYGKGKLTLQ 723

Query: 2117 PGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSPINISQMIACV 1938
            PGC+AAQTLE KI+G LN+IR    NVC+N LHWRNSPLIMSQCGSKGSPINISQM++CV
Sbjct: 724  PGCNAAQTLELKITGVLNQIRAIAGNVCMNELHWRNSPLIMSQCGSKGSPINISQMVSCV 783

Query: 1937 GQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLV 1758
            GQQSVGGRRAPNGFI+R+LPHFP +SKTPAAKGFVANSFY+GLTATEFFFHTMGGREGLV
Sbjct: 784  GQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLV 843

Query: 1757 DTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDPAQMEGKSGTP 1578
            DTAVKTAETGYMSRRLMK LEDLS YYD+TVR++SG +VQ +YGDDGMDPA+MEGK G P
Sbjct: 844  DTAVKTAETGYMSRRLMKGLEDLSIYYDETVRNASGGIVQFLYGDDGMDPAKMEGKDGIP 903

Query: 1577 LNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDAFRKSLSDFLC 1398
            LN+ +LF K+ ATCP    +  L  ++  + +D+RL+K+DM+ EGGC  AF+K LSDF+ 
Sbjct: 904  LNMDQLFMKVMATCPPR-EHDMLSPTEALRIMDDRLAKYDMSPEGGCSAAFKKLLSDFVH 962

Query: 1397 ERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQLQVFLDSCISRY 1218
            +R++ L N R++L LD+  +            VLENVAAKISGISS+QL+VFL++CISRY
Sbjct: 963  KRVSALANMRKSLKLDETDMGR------KDSTVLENVAAKISGISSKQLEVFLETCISRY 1016

Query: 1217 HAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKRIST 1038
            H+K++EAG AIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASK IST
Sbjct: 1017 HSKKVEAGAAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKNIST 1076

Query: 1037 PIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVKLDVEKIEALQM 858
            PI+TA L+   D  +A++VK  IEKT L EVAK++ +++ S   ++ VKLD++ IEAL M
Sbjct: 1077 PIVTATLLNGRDVLSARVVKSCIEKTVLGEVAKALKIVLKSSRPYIVVKLDMDLIEALHM 1136

Query: 857  KIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLLNIKAMLPNVII 678
            ++ A++V  SIL H K K+K EHI  IG  KL+++PP  DR KL F++ ++KAMLP VI+
Sbjct: 1137 RVSAESVCHSILNHPKIKLKSEHINNIGSDKLKIYPPEADRRKLQFEMHSLKAMLPKVIV 1196

Query: 677  KGIPDVERAVISIAKEEYCLLVEGTNLLAVMGSPGVYGSKTKSNHILEVSRTLGIEAARQ 498
            KGIP VERAVI+     Y LLVEGTNLLAVMG+PG+  SKT+SNH++EV RTLGIEAARQ
Sbjct: 1197 KGIPTVERAVINETNGVYNLLVEGTNLLAVMGTPGIDASKTRSNHVIEVQRTLGIEAARQ 1256

Query: 497  TIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITRFDLPKMKDSVLMLASFEQTA 318
             I++EIQYTM  HGMSID RHMMLLAD+MTYKGEVLGITRF + KMK+SVLMLASFE+TA
Sbjct: 1257 CIINEIQYTMRGHGMSIDTRHMMLLADLMTYKGEVLGITRFGISKMKESVLMLASFEKTA 1316

Query: 317  EHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQKYE-LRELAYGPAPIIS 153
            EHLF AS  GR ++I+G SEC+IMG+PMQLG+GILKV+Q+ E L EL Y P PIIS
Sbjct: 1317 EHLFNASYGGRDDQIEGVSECIIMGIPMQLGTGILKVRQRVEKLPELKYAPDPIIS 1372


>ref|XP_006828249.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Amborella trichopoda] gi|548832896|gb|ERM95665.1|
            hypothetical protein AMTR_s00023p00196820 [Amborella
            trichopoda]
          Length = 1383

 Score = 1853 bits (4799), Expect = 0.0
 Identities = 952/1394 (68%), Positives = 1125/1394 (80%), Gaps = 13/1394 (0%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTR-KPIE 4122
            M  EK A  FTK+P++ED+GP+K+KS++F MLSG EI K  E QVY+ D Y+ T  KP E
Sbjct: 1    MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE 60

Query: 4121 HGLLDPRMG-PVKNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSC 3945
            HG+LD RMG   K+  C TC   F  CPGHFGYLKLALPVF+VGYF T I +L+CICKSC
Sbjct: 61   HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC 120

Query: 3944 ARILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSR-CPRCGFINGTVKKANSI 3768
            ARILL E+E   +LK +R P+ E+ QKN  VKK+I +CK  R CPRCG  NG VKKA   
Sbjct: 121  ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPT 180

Query: 3767 LGIAHDLSKVS-DGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLY 3591
              I+HD SK + D   +EC+ A+S  K S +++N V  L P R LALF++M+D+DC+LLY
Sbjct: 181  FRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLY 240

Query: 3590 LYDRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLH 3411
            LYDRPEKLIIT IAVPP  IRP+    +GS  NE+++TTKL  I+Q N TL + +  G  
Sbjct: 241  LYDRPEKLIITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDHVNKG-- 296

Query: 3410 NFPIH----WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKR 3243
            N P +    W +LQV VA YINSE+  +P N  PSK   G VQR+KGKQGRFR NL GKR
Sbjct: 297  NLPQYYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKR 356

Query: 3242 VEFTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANF 3063
            V+FTGRTVISPDPNLKITEVAIP LMAQILTY ERV+ +NIEKLRQCVRNGP KYPGANF
Sbjct: 357  VDFTGRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANF 416

Query: 3062 VLTPDGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIM 2883
            V++  G  L+L YGN+KR ADELK+G  VERHLE G+IVLFNRQPSLHRMSIM HRAR+M
Sbjct: 417  VIS-GGDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVM 475

Query: 2882 PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 2703
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVAS
Sbjct: 476  PWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVAS 535

Query: 2702 TQDFLTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVL 2523
            TQDFLTSS+LITRKDTFYDRA F LMCSYMGDGM+ IDLP+PA+LKPVELWTGKQLFSVL
Sbjct: 536  TQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVL 595

Query: 2522 VRPHSHMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLF 2343
            +RPH+HMKVYVNL++ME++  K  ETMC  D +VY RNSELI GQLGKATLGNGNKDGLF
Sbjct: 596  IRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLF 655

Query: 2342 SVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVC 2163
            SVLLRDYN+HAAASCMNRLAKLSARWIGNHGFSIGIDDV PG  L ++K + I+ GY  C
Sbjct: 656  SVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNC 715

Query: 2162 DGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCG 1983
            D  I  Y++GKL  +PGC+AAQTLEA+I+  LN IR+  A VC+  LHWRNSPLIMSQCG
Sbjct: 716  DAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCG 775

Query: 1982 SKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTA 1803
            SKGSPINISQMIACVGQQSVGGRRAPNGFI+RSLPHFPR+ KTPAAKGFVANSFY+GLTA
Sbjct: 776  SKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTA 835

Query: 1802 TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGD 1623
             EFFFHTMGGREGLVDTAVKTA+TGY+SRRL+KSLEDLST+YDDTVR+SSG ++Q  YGD
Sbjct: 836  AEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGD 895

Query: 1622 DGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEG 1443
            DGMDPA+MEGKSG PLNL RLF KIKATCPA+   A+L  S+I   +++RLSKHDMT E 
Sbjct: 896  DGMDPAKMEGKSGVPLNLDRLFMKIKATCPAS-VSASLSPSEISTIVNDRLSKHDMTPER 954

Query: 1442 GCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGIS 1263
            GC  AF++ LS+F+ +R+  +  TR  LGLD+D +   K +       LE+VAA ISGIS
Sbjct: 955  GCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSG------LEHVAANISGIS 1008

Query: 1262 SRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1083
             +QL+VFL++CISRYH KR+EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+TLGV
Sbjct: 1009 RQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1068

Query: 1082 PRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAF 903
            PRIKEI+ ASK+ISTPIITA L+CD+DEK+A++VKG IEKT L EVAK+V + VT  +A 
Sbjct: 1069 PRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQAS 1128

Query: 902  VRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKV----IGPYKLEVHPPVVDR 735
            + + LD+++IEALQM IDAKTV  SI ++ K K+ +  +KV      P KL++  P + R
Sbjct: 1129 INITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLPEIGR 1188

Query: 734  SKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKEEYCLLVEGTNLLAVMGSPGVYGSKT 555
             ++L+ L  ++++LP +I+KGIP VERAVI+  K +  LLVEGTNLLAVMG+PGV G  T
Sbjct: 1189 KEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNT 1248

Query: 554  KSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITRF 375
             SNHI+EV  TLGIEAAR++I+DEIQYTM SHGMSID+RHMMLLAD+MT++G VLGI RF
Sbjct: 1249 TSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRF 1308

Query: 374  DLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQKY 195
             + KMK+SVLMLASFE+TA+ LF A+ RGR + I G SEC+IMGVPMQ+G+GIL V+Q+ 
Sbjct: 1309 GITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQRP 1368

Query: 194  E-LRELAYGPAPII 156
            E L +L YGP PII
Sbjct: 1369 EQLAKLTYGPDPII 1382


>ref|XP_011627269.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Amborella trichopoda]
          Length = 1367

 Score = 1841 bits (4768), Expect = 0.0
 Identities = 943/1379 (68%), Positives = 1115/1379 (80%), Gaps = 12/1379 (0%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTR-KPIE 4122
            M  EK A  FTK+P++ED+GP+K+KS++F MLSG EI K  E QVY+ D Y+ T  KP E
Sbjct: 1    MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE 60

Query: 4121 HGLLDPRMG-PVKNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSC 3945
            HG+LD RMG   K+  C TC   F  CPGHFGYLKLALPVF+VGYF T I +L+CICKSC
Sbjct: 61   HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC 120

Query: 3944 ARILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSR-CPRCGFINGTVKKANSI 3768
            ARILL E+E   +LK +R P+ E+ QKN  VKK+I +CK  R CPRCG  NG VKKA   
Sbjct: 121  ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPT 180

Query: 3767 LGIAHDLSKVS-DGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLY 3591
              I+HD SK + D   +EC+ A+S  K S +++N V  L P R LALF++M+D+DC+LLY
Sbjct: 181  FRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLY 240

Query: 3590 LYDRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLH 3411
            LYDRPEKLIIT IAVPP  IRP+    +GS  NE+++TTKL  I+Q N TL + +  G  
Sbjct: 241  LYDRPEKLIITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDHVNKG-- 296

Query: 3410 NFPIH----WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKR 3243
            N P +    W +LQV VA YINSE+  +P N  PSK   G VQR+KGKQGRFR NL GKR
Sbjct: 297  NLPQYYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKR 356

Query: 3242 VEFTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANF 3063
            V+FTGRTVISPDPNLKITEVAIP LMAQILTY ERV+ +NIEKLRQCVRNGP KYPGANF
Sbjct: 357  VDFTGRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANF 416

Query: 3062 VLTPDGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIM 2883
            V++  G  L+L YGN+KR ADELK+G  VERHLE G+IVLFNRQPSLHRMSIM HRAR+M
Sbjct: 417  VIS-GGDTLSLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVM 475

Query: 2882 PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 2703
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVAS
Sbjct: 476  PWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVAS 535

Query: 2702 TQDFLTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVL 2523
            TQDFLTSS+LITRKDTFYDRA F LMCSYMGDGM+ IDLP+PA+LKPVELWTGKQLFSVL
Sbjct: 536  TQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVL 595

Query: 2522 VRPHSHMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLF 2343
            +RPH+HMKVYVNL++ME++  K  ETMC  D +VY RNSELI GQLGKATLGNGNKDGLF
Sbjct: 596  IRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLF 655

Query: 2342 SVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVC 2163
            SVLLRDYN+HAAASCMNRLAKLSARWIGNHGFSIGIDDV PG  L ++K + I+ GY  C
Sbjct: 656  SVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNC 715

Query: 2162 DGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCG 1983
            D  I  Y++GKL  +PGC+AAQTLEA+I+  LN IR+  A VC+  LHWRNSPLIMSQCG
Sbjct: 716  DAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCG 775

Query: 1982 SKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTA 1803
            SKGSPINISQMIACVGQQSVGGRRAPNGFI+RSLPHFPR+ KTPAAKGFVANSFY+GLTA
Sbjct: 776  SKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTA 835

Query: 1802 TEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGD 1623
             EFFFHTMGGREGLVDTAVKTA+TGY+SRRL+KSLEDLST+YDDTVR+SSG ++Q  YGD
Sbjct: 836  AEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGD 895

Query: 1622 DGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEG 1443
            DGMDPA+MEGKSG PLNL RLF KIKATCPA+   A+L  S+I   +++RLSKHDMT E 
Sbjct: 896  DGMDPAKMEGKSGVPLNLDRLFMKIKATCPAS-VSASLSPSEISTIVNDRLSKHDMTPER 954

Query: 1442 GCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGIS 1263
            GC  AF++ LS+F+ +R+  +  TR  LGLD+D +   K +       LE+VAA ISGIS
Sbjct: 955  GCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSG------LEHVAANISGIS 1008

Query: 1262 SRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1083
             +QL+VFL++CISRYH KR+EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+TLGV
Sbjct: 1009 RQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGV 1068

Query: 1082 PRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAF 903
            PRIKEI+ ASK+ISTPIITA L+CD+DEK+A++VKG IEKT L EVAK+V + VT  +A 
Sbjct: 1069 PRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQAS 1128

Query: 902  VRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKV----IGPYKLEVHPPVVDR 735
            + + LD+++IEALQM IDAKTV  SI ++ K K+ +  +KV      P KL++  P + R
Sbjct: 1129 INITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPDKLKILLPEIGR 1188

Query: 734  SKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKEEYCLLVEGTNLLAVMGSPGVYGSKT 555
             ++L+ L  ++++LP +I+KGIP VERAVI+  K +  LLVEGTNLLAVMG+PGV G  T
Sbjct: 1189 KEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVKGKLNLLVEGTNLLAVMGTPGVDGRNT 1248

Query: 554  KSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITRF 375
             SNHI+EV  TLGIEAAR++I+DEIQYTM SHGMSID+RHMMLLAD+MT++G VLGI RF
Sbjct: 1249 TSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFRGLVLGIQRF 1308

Query: 374  DLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQK 198
             + KMK+SVLMLASFE+TA+ LF A+ RGR + I G SEC+IMGVPMQ+G+GIL V+Q+
Sbjct: 1309 GITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGTGILSVQQR 1367


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1832 bits (4745), Expect = 0.0
 Identities = 927/1396 (66%), Positives = 1125/1396 (80%), Gaps = 14/1396 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  +  TKEP+IEDVG +++KSIRF+M SG+E+ +  EVQV+ S +Y+   KP+ +
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 4118 GLLDPRMGPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCA 3942
            GLLD RMG   K  EC+TC  SF +CPGHFGYLKLALPVFNVG+F  I+++LKCICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 3941 RILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILG 3762
            R+LL EK+ + +LK MR PK + LQK+A++KK+  +CK SRCP CGFING  KK  + L 
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I HD SK  DGS EE R A+S +K+ + + + V +L PA VL+LFK+M D+DCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFP 3402
            RPEKLI+T+IAVPPV IRPS+F+  G  SNED IT  L SI  +N+ L+E+LQ G     
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 3401 IH--WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
                W+ LQ+ V +YINS+   +P +       RG VQR+KGK GRFRGNLSGKR E+TG
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPES-----QHRGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNL+ITEVAIPILMA++LTYPERVS YNIEKLRQC+RNGP K+PGANF++ PD
Sbjct: 355  RTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPD 414

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G+KL+L Y +R+  A +LKYG  VERHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 415  GTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 474

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 475  RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 534

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFL+TRKD FYDR++F L+CSY+GD M+ IDLP+PA++KP+ELWTGKQLFSVLVRP++
Sbjct: 535  TSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNA 594

Query: 2507 HMKVYVNLTVMERDCMKNR------ETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGL 2346
              KV++NLTV E+     +      E MCP D +VYFRNSEL+ GQ+GKATLGNGNKDG+
Sbjct: 595  CTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGM 654

Query: 2345 FSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWV 2166
            FS L+RDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN++K   I+ GY  
Sbjct: 655  FSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKD 714

Query: 2165 CDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQC 1986
            C  LI  Y++G LR QPGC+AAQTLE  I+  LN+IREE   VC+N LHWRNSPLIMSQC
Sbjct: 715  CHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQC 774

Query: 1985 GSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLT 1806
            GSKGSPINISQM+ACVGQQSVGGRRAPNGFI+R+LPHFP +SKTPAAKGFVANSFY+GLT
Sbjct: 775  GSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLT 834

Query: 1805 ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYG 1626
            ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS +YD TVR++SG +VQ +YG
Sbjct: 835  ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYG 894

Query: 1625 DDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLE 1446
            DDGMDPA+MEGK G PLNL +LF K+ ATCP  G   TL   +I Q ++++LS+HD + +
Sbjct: 895  DDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRG-QNTLSPGEILQILNDKLSEHDASSD 953

Query: 1445 GGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGI 1266
             GC + F++ L+ FL +RI  L +TRRAL LD+D +              E++AA ISGI
Sbjct: 954  DGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGE------RHSSFEESIAANISGI 1007

Query: 1265 SSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1086
            S +QLQVFLD+C+SRYH K++EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG
Sbjct: 1008 SVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1067

Query: 1085 VPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREA 906
            VPRIKEIINA+K+ISTPIITA L+ + D  +A++VKG +EK  L EVA+++ +++ S + 
Sbjct: 1068 VPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQP 1127

Query: 905  FVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKL 726
             + VKLD+++IEAL M I A +V+ SIL H K K+K EH++VI   KL ++P  +D+SKL
Sbjct: 1128 NLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKL 1187

Query: 725  LFQLLNIKAMLPNVIIKGIPDVERAVISIAKEE----YCLLVEGTNLLAVMGSPGVYGSK 558
            L++L ++K+MLP VI+KGIP VERAVIS   EE    Y LLVEGTNLLAVMG+PGV   K
Sbjct: 1188 LYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMK 1247

Query: 557  TKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGITR 378
            TKSNHI+EV+RTLGIEAAR++I+DEIQYTM SHGM+ID RHMMLLAD+MTYKGE+LGITR
Sbjct: 1248 TKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITR 1307

Query: 377  FDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQK 198
            + + KMK SVLMLASFE+TAEHLF AS  GR ++I+G SEC+IMG+PMQLG+GILKV+Q+
Sbjct: 1308 YGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQR 1367

Query: 197  YE-LRELAYGPAPIIS 153
             + L E  Y P PI++
Sbjct: 1368 LDHLPEFKYQPDPILA 1383


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1827 bits (4733), Expect = 0.0
 Identities = 917/1403 (65%), Positives = 1128/1403 (80%), Gaps = 21/1403 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  +  TKEP+IED G +++KSIRF+M SG+E+ +  EVQV+ S +Y+   +P+ +
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60

Query: 4118 GLLDPRMGPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCA 3942
            GLLD RMG   K  EC+TC  SF +CPGHFGYLKLALPVFNVG+F  I+++LKCICK C+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120

Query: 3941 RILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILG 3762
            R+LL EK+ + +LK MR PK + LQK+A++KK+  +CK SRCP CGFING  KK  + L 
Sbjct: 121  RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I HD SK  DGS EE + A+S +K+ + +++ V++L PA VL+LFK+M D+DCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFP 3402
            RPEKLI+T+IAVPPV IRPS+F+  G  SNED IT  L SI  +N+ L+E+LQ G     
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 3401 IH--WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
                W+ LQ+ V +YINS+   +P +       RG VQR+KGK GRFRGNLSGKR E+TG
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPES-----QHRGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNL+ITEVAIPILMA++LTYPERVS YNIEKLRQC+RNGP K+PGANF++  D
Sbjct: 355  RTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTD 414

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G+KL+L Y +R+  A +LKYG  VERHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 415  GTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 474

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 475  RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 534

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFL+TRKD FYDR++F L+CSY+GD M+ IDLP+PA++KP+ELWTGKQLFSVLVRP++
Sbjct: 535  TSSFLVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNA 594

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
              KV++NLTV E+   K+RETMCP D +VYFRNSEL+ GQ+GK TLGNGNKDG+FS+L+R
Sbjct: 595  CTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVR 654

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDV+PGE L+++K K I++GY  C  LI 
Sbjct: 655  DYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLIT 714

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             +++G L  QPGC+AAQTLE KI+  LNKIRE   N+C++ LHWRNSPLIMSQCGSKGSP
Sbjct: 715  SFSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSP 774

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLT------ 1806
            INISQM+ CVGQQSVGG RAPNGFI+R+LPHFP +SKTPAAKGFVANSFY+GLT      
Sbjct: 775  INISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFF 834

Query: 1805 -----------ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRD 1659
                       ATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS +YD TVR+
Sbjct: 835  HTMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRN 894

Query: 1658 SSGNVVQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAID 1479
            +SG +VQ +YGDDGMDPA+MEG+ G PLNL +LF K+ ATCP  G   TL   +I Q ++
Sbjct: 895  ASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRG-QNTLSPGEILQILN 953

Query: 1478 ERLSKHDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHV 1299
            ++LS+HD + + GC + F++ L DFL +RI  L +TRRAL LD++ +      E      
Sbjct: 954  DKLSEHDASSDDGCSEKFKQLLKDFLEDRIKLLKSTRRALCLDENHVGKDSSIE------ 1007

Query: 1298 LENVAAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHF 1119
             E++AA ISGIS++QLQVFLD+C+SRYH+K++EAG +IGAIGAQSIGEPGTQMTLKTFHF
Sbjct: 1008 -ESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHF 1066

Query: 1118 AGVASMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAK 939
            AGVASMNVTLGVPRIKEIINA+K+ISTPIITA L+   D  +A++VKG +EK  L EVA+
Sbjct: 1067 AGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAE 1126

Query: 938  SVNLIVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLE 759
             + +++ S +  + VKLD+++IE L M I A +V+ SIL H + K+K EH++VI   KL 
Sbjct: 1127 DIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLR 1186

Query: 758  VHPPVVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKEEYCLLVEGTNLLAVMGS 579
            V+P  +D+SKLL++L N+K+MLP VI+KGIP VERAVIS   ++Y LLVEGTNLLAVMG+
Sbjct: 1187 VYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVISQTGDKYSLLVEGTNLLAVMGT 1246

Query: 578  PGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKG 399
            PGV   KTKSNHI+EV+RTLGIEAAR++I+DEIQYTM+SHGM+ID RHMMLLAD+MTYKG
Sbjct: 1247 PGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKG 1306

Query: 398  EVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSG 219
            E+LGITR+ + KMK SVLMLASFE+TAEHLF AS  GR ++I+G SEC+IMG+PMQLG+G
Sbjct: 1307 EILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTG 1366

Query: 218  ILKVKQKYE-LRELAYGPAPIIS 153
            ILKV+Q+ + L E  Y P PI++
Sbjct: 1367 ILKVRQRLDHLPEFKYQPDPILA 1389


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1816 bits (4704), Expect = 0.0
 Identities = 941/1407 (66%), Positives = 1109/1407 (78%), Gaps = 34/1407 (2%)
 Frame = -3

Query: 4271 FTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRMGP 4092
            FTK PYIEDVGP+K+KSI+F+MLS SEI K  EVQVY++  YD   +PIE GLLDPRMGP
Sbjct: 5    FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 4091 V-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEKEC 3915
              K+ +C TC  +F DCPGH+GYL LALPV+NVGY  TI++ILKCICKSC+RI+L EK C
Sbjct: 65   ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 3914 IAYLKMMRRPKLEVLQKNALVKKIIGRC------KPSRCPRCGFINGTVKKANSILGIAH 3753
              YLK MR PK++ L+K  ++K I+ +C      K  +C RCG++NGTVKKA ++LGI H
Sbjct: 125  KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIH 184

Query: 3752 DLSKVSDGSLEECRLAVSVRKDSQANYNRVN-VLHPARVLALFKKMLDKDCELLYLYDRP 3576
            D SK++D SLEE R A+S  K+S+A++N    VL+P +VL+LFK+M D DCELLYL DRP
Sbjct: 185  DRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRP 244

Query: 3575 EKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFPI- 3399
            EKLIIT+IAVPP+ IRPS+ MD GS SNE+DIT +L  I+Q+NA+L++ L      F   
Sbjct: 245  EKLIITNIAVPPIPIRPSVIMD-GSQSNENDITERLKRIIQANASLRQELVETNAAFKCL 303

Query: 3398 -HWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTGRT 3222
              WEMLQV VAQYINS+VRGVP ++  SKP  GFVQRIKGK GRFRGNLSGKRVE+TGRT
Sbjct: 304  GGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRT 363

Query: 3221 VISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPDGS 3042
            VISPDPNLKITEVAIPI MA+ILTYPERVSN+NIEKLRQCVRNGP KYPGA  V  PDGS
Sbjct: 364  VISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGS 423

Query: 3041 KLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRF 2862
               L    RKR+ADELK+G  V+RHLE GDIVLFNRQPSLHRMSIM HRARIMPWRTLRF
Sbjct: 424  ARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRF 483

Query: 2861 NESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 2682
            NESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS
Sbjct: 484  NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 543

Query: 2681 SFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHSHM 2502
            SFLITRKD FYDRAAF L+CSYMGDGMD IDLP+PA+LKP+ELWTGKQLFSVL+RPH+ +
Sbjct: 544  SFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASV 603

Query: 2501 KVYVNLTVMERDCMK-----------NRETMCPKDRYVYFRNSELICGQLGKATLGNGNK 2355
            +VY+NL V ER+  K             ETMCP D +VY RNSELICGQLGKATLGNGNK
Sbjct: 604  RVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNK 663

Query: 2354 DGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKG 2175
            DGL+SVLLRDYNAHAAA+CMNRLAKLSARWIGNHGFSIGIDDVQPG+ LN++K  TI   
Sbjct: 664  DGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGD 723

Query: 2174 YWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIM 1995
            Y  CD  I  +NEGKL+P+PG DAAQTLEA ++  LN IR++T  VC+  LHWRNSPLIM
Sbjct: 724  YKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIM 783

Query: 1994 SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYS 1815
            SQCGSKGS INISQMIACVGQQSVGGRRAPNGFI+RSLPHF R SKTPAAKGFVANSFYS
Sbjct: 784  SQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYS 843

Query: 1814 GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQL 1635
            GLTATEFFFHTM GREGLVDTAVKTAETGYMSRRL+K+LEDLS +YD+TVR++SG +VQ 
Sbjct: 844  GLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQF 903

Query: 1634 IYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDM 1455
            IYGDDGMDPA MEGKSG PLN  RL  K+KATCP       L    I Q ++E+L+KHD 
Sbjct: 904  IYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPI-EQKCLHVGSIMQMLEEQLAKHDP 962

Query: 1454 TLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKI 1275
               G C +AF+KSL  FL  +  +L           D +  +  N      +LE V  KI
Sbjct: 963  A--GVCSEAFKKSLKGFLKSQTNEL-----------DRVMKLVNNCAQKSEILEKVGHKI 1009

Query: 1274 SGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNV 1095
            SGIS RQL+VF+ +CISRY +K +EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN+
Sbjct: 1010 SGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 1069

Query: 1094 TLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTS 915
            T GVPRIKEIINA+KRISTP+ITA L  DD+   A++VKG IEKT L +VAKS+ +++TS
Sbjct: 1070 TQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITS 1129

Query: 914  REAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDR 735
            R A V + LD+E I   ++ IDA  VK+SILQ  K K+K++H+KV+   KLEV PP  DR
Sbjct: 1130 RSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPP-ADR 1188

Query: 734  SKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKEE------------YCLLVEGTNLLA 591
            S++ F+L ++K +LP V++KGI  VER V+    +E            + LLVEGT L A
Sbjct: 1189 SQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQA 1248

Query: 590  VMGSPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVM 411
            VMG  G+ G +T SNH++E+ + LGIEAAR+ I+DEI  TM  HGM+ID RHMMLLADVM
Sbjct: 1249 VMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVM 1308

Query: 410  TYKGEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQ 231
            T++GEVLGITRF + KM  S+LMLASFE+TA+HLF A++ GR +KI+G +EC+IMG+PMQ
Sbjct: 1309 TFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQ 1368

Query: 230  LGSGILKVKQKYELRE-LAYGPAPIIS 153
            +G+GILKV Q+ +    L YGP P++S
Sbjct: 1369 IGTGILKVIQRVDPPPMLRYGPDPVLS 1395


>ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Cucumis melo]
          Length = 1400

 Score = 1813 bits (4696), Expect = 0.0
 Identities = 932/1402 (66%), Positives = 1102/1402 (78%), Gaps = 27/1402 (1%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            + FTK+PYIEDVGP+K+KS++FT  SG+EI+K  EVQVY+   YDTTRKPI+ GLLDPRM
Sbjct: 9    LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  K  +C+TC A+F DCPGH+GY+ L+LPVFNVGYF TI+EILKCICKSC+RILL EK
Sbjct: 69   GPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
                +L+ MR PKLE L+K  LVKKII +C       K ++C RCG++NG+VKKA S+LG
Sbjct: 129  LYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSVKKAVSMLG 188

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVN-VLHPARVLALFKKMLDKDCELLYLY 3585
            I H  ++  D  +        V +D +A YN  N +L+P RVL LF++M D+DCELL+L 
Sbjct: 189  ILHYRARSKDAGV--------VSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 3584 DRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNF 3405
            DRPEKLIIT++ VPP+AIRPS+ MD GS SNE+DIT +L  I+Q NA++ + L       
Sbjct: 241  DRPEKLIITNVLVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQELSTSNSQA 299

Query: 3404 PI--HWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFT 3231
                 W+MLQ  VAQ INS+VRG+P  +  SKP  GFVQR+KGKQGRFRGNL GKRVEFT
Sbjct: 300  KCLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFT 359

Query: 3230 GRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTP 3051
            GRTVISPDPNLKITEVA+PI MA+ILTYPERV+++NIEKLRQCV NGP KYPGA  +   
Sbjct: 360  GRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHL 419

Query: 3050 DGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRT 2871
            DGS  +L    RKR+ADELKYG  VERHLE GD+VLFNRQPSLHRMSIM HR R+MPWRT
Sbjct: 420  DGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRT 479

Query: 2870 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2691
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDF
Sbjct: 480  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDF 539

Query: 2690 LTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPH 2511
            LTSSFLITRKDTFYDRAAF LMCSYMGDGMD IDLP+PA++KP+ELWTGKQLFSVLVRPH
Sbjct: 540  LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLIDLPTPALIKPIELWTGKQLFSVLVRPH 599

Query: 2510 SHMKVYVNLTVMERDCM------KNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDG 2349
            + MKVY+NLTV E+         K RETMCP D +VYFRNSELI GQ+GKATLGNGNKDG
Sbjct: 600  ASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDG 659

Query: 2348 LFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYW 2169
            L+SVLLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L  KK  TI +GY 
Sbjct: 660  LYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVXKKQTTILEGYR 719

Query: 2168 VCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQ 1989
             CD  I  +N G L P+ GCDAAQ+LEAKI+  LN IRE TANVC+  LHWRNSPLIMSQ
Sbjct: 720  DCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQ 779

Query: 1988 CGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGL 1809
            CGSKGSPINISQM+ACVGQQSVGGRRAP+GFI+RSLPHF R +KTPAAKGFVANSFYSGL
Sbjct: 780  CGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGL 839

Query: 1808 TATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIY 1629
            TATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDLS YYD +VR++ G +VQ  Y
Sbjct: 840  TATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIYYDSSVRNAGGCIVQFCY 899

Query: 1628 GDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTL 1449
            GDDGMDPAQMEGKSG PLN  RLF K KATCP+ G    L  S+  + +++RLSK D + 
Sbjct: 900  GDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDG-NKILSPSEFSETVEDRLSKDDASP 958

Query: 1448 EGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSI---QTIKLNEYNLKHVLENVAAK 1278
            E GC  AF  SL  FL + I     +   L  D+++      I  ++ +   +  NV   
Sbjct: 959  ECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLADNETAVDKSIISSSDNDNIVIRNNVVQN 1018

Query: 1277 ISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1098
            I+G++ RQLQVFLD+C+SRYH K++EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1019 IAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1078

Query: 1097 VTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVT 918
            VTLGVPRIKEIIN +KRISTPI+TA L  DD+   A++VK  IEKT L ++AK + ++++
Sbjct: 1079 VTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMS 1138

Query: 917  SREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVD 738
            SR A + +KLD+EKI   ++ +DA  VKQ+IL   K K+K EHI V+   KL V P   D
Sbjct: 1139 SRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDAD 1198

Query: 737  RSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKE------EYCLLVEGTNLLAVMGSP 576
            R+KL F L  +K MLP V++KGI  V RAVI   K+      ++ LLVEGT L AVMG+ 
Sbjct: 1199 RNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTE 1258

Query: 575  GVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGE 396
            GV G  TKSNHI+EV + LGIEAAR+ I++EI+YTM SHGMSIDIRHMMLL D+MT++GE
Sbjct: 1259 GVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGE 1318

Query: 395  VLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGI 216
            VLGITRF + KM  SVLMLASFE+TA+HLF AS+ GR +KI+G SECVIMG+PM LG+G+
Sbjct: 1319 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGM 1378

Query: 215  LKVKQKYEL-RELAYGPAPIIS 153
            LKV+Q+  + R+L YGP  I+S
Sbjct: 1379 LKVRQRVSVPRQLPYGPPAILS 1400


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis
            sativus]
          Length = 1400

 Score = 1808 bits (4683), Expect = 0.0
 Identities = 931/1402 (66%), Positives = 1104/1402 (78%), Gaps = 27/1402 (1%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            + FTK+PYIEDVGP+K+KS++FT  SG+EI+K  EVQVY+   YDTTRKPI+ GLLDPRM
Sbjct: 9    LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  K  +C TC A+F DCPGH+GY+ LALPVFNVGYF TI+EILKCICKSC+RILL EK
Sbjct: 69   GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
                +L+ MR PKLE L+K  LVKKII +C       K +RC RCG++NG+VKKA S+LG
Sbjct: 129  LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLG 188

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVN-VLHPARVLALFKKMLDKDCELLYLY 3585
            I H  ++  D  +        V +D +A YN  N +L+P RVL LF++M D+DCELL+L 
Sbjct: 189  ILHYRARSKDAGV--------VSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 3584 DRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNF 3405
            +RPEKLIIT++ VPP+AIRPS+ MD GS SNE+DIT +L  I+Q NA++ + L       
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQELSTSNSQA 299

Query: 3404 PI--HWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFT 3231
                 W+MLQ  VAQ INS+VRG+P ++  SKP  GFVQR+KGKQGRFRGNL GKRVEFT
Sbjct: 300  KCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFT 359

Query: 3230 GRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTP 3051
            GRTVISPDPNLKITEVA+PI MA+ILTYPERV+ +NIEKLRQCV NGP KYPGA  +   
Sbjct: 360  GRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHL 419

Query: 3050 DGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRT 2871
            DGS  +L    RKR+ADELKYG  VERHLE GD+VLFNRQPSLHRMSIM HR R+MPWRT
Sbjct: 420  DGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRT 479

Query: 2870 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2691
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDF
Sbjct: 480  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDF 539

Query: 2690 LTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPH 2511
            LTSSFLITRKDTFYDRAAF LMCSYMGDGMD +DLP+PA++KP+ELWTGKQLFSVLVRPH
Sbjct: 540  LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPH 599

Query: 2510 SHMKVYVNLTVMERDCM------KNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDG 2349
            + MKVY+NLTV E+         K RETMCP D +VYFRNSELI GQ+GKATLGNGNKDG
Sbjct: 600  ASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDG 659

Query: 2348 LFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYW 2169
            L+SVLLRDY AHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+ L +KK  TI +GY 
Sbjct: 660  LYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYR 719

Query: 2168 VCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQ 1989
             CD  I  +N G L P+ GCDAAQ+LE+KI+  LN IRE TANVC+  LHWRNSPLIMSQ
Sbjct: 720  DCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQ 779

Query: 1988 CGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGL 1809
            CGSKGSPINISQM+ACVGQQSVGGRRAP+GFI+RSLPHF R +KTPAAKGFVANSFYSGL
Sbjct: 780  CGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGL 839

Query: 1808 TATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIY 1629
            TATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K+LEDLS +YD +VR++ G +VQ  Y
Sbjct: 840  TATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCY 899

Query: 1628 GDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTL 1449
            GDDGMDPAQMEGKSG PLN  RLF K KATCP+ G    L  S+  + +++RLSK D + 
Sbjct: 900  GDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDG-NKILSPSEFSETVEDRLSKDDASP 958

Query: 1448 EGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSI--QTIKLNEYNLKHVLEN-VAAK 1278
            E GC  AF  SL  FL + +     +   L  D++S   ++I  +  N   V+ N V   
Sbjct: 959  ECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRNKVVQN 1018

Query: 1277 ISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1098
            I+G++ RQLQVFLD+C+SRYH K++EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1019 IAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1078

Query: 1097 VTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVT 918
            VTLGVPRIKEIIN +KRISTPI+TA L  DD+   A++VK  IEKT L ++AK + ++++
Sbjct: 1079 VTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMS 1138

Query: 917  SREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVD 738
            SR A + +KLD+EKI   ++ +DA  VKQ+IL   K K+K EHI V+   KL V P   D
Sbjct: 1139 SRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDAD 1198

Query: 737  RSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAKE------EYCLLVEGTNLLAVMGSP 576
            R+KL F L  +K MLP V++KGI  V RAVI   K+      ++ LLVEGT L AVMG+ 
Sbjct: 1199 RNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQAVMGTE 1258

Query: 575  GVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGE 396
            GV G  TKSNHI+EV + LGIEAAR+ I++EI+YTM SHGMSIDIRHMMLL D+MT++GE
Sbjct: 1259 GVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGE 1318

Query: 395  VLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGI 216
            VLGITRF + KM  SVLMLASFE+TA+HLF AS+ GR +KI+G SECVIMG+PM LG+G+
Sbjct: 1319 VLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGM 1378

Query: 215  LKVKQKYEL-RELAYGPAPIIS 153
            LKV+Q+  + ++L YGP  I+S
Sbjct: 1379 LKVRQRVSVPQQLPYGPPAILS 1400


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1808 bits (4682), Expect = 0.0
 Identities = 915/1404 (65%), Positives = 1115/1404 (79%), Gaps = 22/1404 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  +  TKEP+IEDVG +++KSIRF++LSGSEI K  EVQV+ + +Y    KP+ +
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60

Query: 4118 GLLDPRMG-PVKNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCA 3942
            GLLDPRMG P K  +C+TC   F+DCPGHFGYLKLALPVFNVG+F  I+++LKCICKSC+
Sbjct: 61   GLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 3941 RILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILG 3762
            R+LL EK+   +LK MR P+ + LQK+A +KK+  +CK S CPRC + NG VKK  + L 
Sbjct: 121  RVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            + HD SKV DG  EE + A+  +K+ + + N V VL PA VL+LF++M D+DCELL L D
Sbjct: 181  VVHDCSKVLDGHTEELKNALQNKKE-KVSANSVRVLDPATVLSLFRRMTDEDCELLNLGD 239

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFP 3402
            RPEKLI+++IAVPPV IRPS+ + +   SNED IT  L SI+ +N+ L+E+L  G     
Sbjct: 240  RPEKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTK 299

Query: 3401 IH--WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
                W+ LQ+ V +Y+NS+     A   P    RG VQR+KGK GRFRGNLSGKR E+TG
Sbjct: 300  CFDCWQYLQLQVVEYVNSD-----APCLPDSQHRGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIP+LMA++LTYPERVSNYNIEKLRQC+RNGP KYPGANFV  PD
Sbjct: 355  RTVISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPD 414

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G K +L YG+R+  A +LK G  VERHLE GD+VLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 415  GMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTL 474

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 475  RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 534

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFL+TRKDTFYDR++F L+CSY+GD M+ IDLP+PA++KP+ELWTGKQLFSVLVRP++
Sbjct: 535  TSSFLVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNA 594

Query: 2507 HMKVYVNLTVMER-------------DCMKNRETMCPKDRYVYFRNSELICGQLGKATLG 2367
            H +V++NL V E+             + M  RETMCP D YVYFRNSEL+ GQ+GKATLG
Sbjct: 595  HTRVFLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLG 654

Query: 2366 NGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKT 2187
            NGNKDGL+SVLLRDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN +K K 
Sbjct: 655  NGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKE 714

Query: 2186 IEKGYWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNS 2007
            I+ GY  C  LI  + +G L   PGC+AAQTLE  I+G LN+IR    NVC++ LHWRNS
Sbjct: 715  IDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNS 774

Query: 2006 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVAN 1827
            PLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF+ R+LPHFP +SKTPAAKGFVAN
Sbjct: 775  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVAN 834

Query: 1826 SFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGN 1647
            SFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS +YD TVR++SG 
Sbjct: 835  SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 894

Query: 1646 VVQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLS 1467
            +VQ +YGDDGMDPA+MEGK G PLNL +LF K+ ATCP  G+  TL    I+Q ++++L 
Sbjct: 895  IVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGS-DTLSPEAIKQMLEDKLL 953

Query: 1466 KHDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENV 1287
            +HD + +GGC + F+K+L++FL +RI  +  TRRAL L +D +      E     V E+V
Sbjct: 954  QHDTSSDGGCSEEFKKNLTEFLDKRIELMKCTRRALHLHEDHV------EKKDSCVEESV 1007

Query: 1286 AAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1107
            AA ISGIS++QLQVFLD+C+SRY +K++EAG +IGAIGAQSIGEPGTQMTLKTFHFAGVA
Sbjct: 1008 AAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1067

Query: 1106 SMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNL 927
            SMNVTLGVPRIKEIINA+++ISTPIITA L+   D  +A++VKG +EK  L EVA ++ +
Sbjct: 1068 SMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQI 1127

Query: 926  IVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPP 747
            ++ S +  + VKLD++ IE+L M I A +V+ SIL H K K+K EH++VI   KL ++P 
Sbjct: 1128 VLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPA 1187

Query: 746  VVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAK-----EEYCLLVEGTNLLAVMG 582
              D+ KL  +L N+K++LP VI+KGIP VER VI   K     E Y LLVEGTNLLAVMG
Sbjct: 1188 GTDKRKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVKNETERYQLLVEGTNLLAVMG 1247

Query: 581  SPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYK 402
            +PGV  +KTKSNHI+E ++TLGIEAAR++I+DEIQYTM SHGM+ID RHMMLLAD+MTYK
Sbjct: 1248 TPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYK 1307

Query: 401  GEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGS 222
            GE+LGITR+ + KMK SVLMLASFE+T+EHLF AS  GR ++I+G SEC+IMG+PMQLG+
Sbjct: 1308 GEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGT 1367

Query: 221  GILKVKQKYE-LRELAYGPAPIIS 153
            GILKV+Q+ + + E  Y P PI+S
Sbjct: 1368 GILKVRQRLDHVPEFKYQPDPILS 1391


>ref|XP_011081084.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Sesamum
            indicum]
          Length = 1405

 Score = 1807 bits (4681), Expect = 0.0
 Identities = 926/1413 (65%), Positives = 1120/1413 (79%), Gaps = 39/1413 (2%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            + F+K+PYIEDVGP++++SI+F+  SG+E+ K  EV+V R   YD+T+KPI++GLLDP M
Sbjct: 8    LQFSKQPYIEDVGPRRIESIQFSTFSGTEVLKTAEVEVSRGVYYDSTKKPIDNGLLDPHM 67

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  KN  C TC  +F +CPGH GYL LALPV+NVGY  TII+ILKCICK CAR+LL EK
Sbjct: 68   GPPNKNGFCKTCYGNFRECPGHCGYLALALPVYNVGYLSTIIDILKCICKKCARVLLEEK 127

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
            E   +LK MR PKLE L+KN ++KK++ RC       +  +C RCG+ING VKK    L 
Sbjct: 128  ERQEFLKKMRNPKLEPLKKNEILKKVVKRCNAMAGSKRAVKCSRCGYINGMVKKGP--LK 185

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I HD +K+ D  LEEC+ AVS  KDS+ N N  +++ P  V  L + MLD+DCELLYL D
Sbjct: 186  IQHDRAKIVDSDLEECQSAVSHTKDSKGNVNFSSIIDPKLVYQLLRNMLDEDCELLYLND 245

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATL-QESLQGGLHNF 3405
            RPEKL++T+I VPP+AIRPS+F+D G+ SNE+DIT +L  I+Q+NA+L QE L+  L+N 
Sbjct: 246  RPEKLMVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQELLETNLYNK 305

Query: 3404 PI-HWEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
             +  W+ LQ+ VAQYINS+VRG+P ++T +KP  GFVQR+KGKQGRFRGNLSGKRVE+TG
Sbjct: 306  NLTSWDDLQMEVAQYINSDVRGLPFHMTTAKPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 365

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKI+EVAIPILMA+ILTYPERVS++NIEKLRQCVRNGP KYPGA F+  PD
Sbjct: 366  RTVISPDPNLKISEVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKFIRQPD 425

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G++++L + +RKR ADELKYGY V+RHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 426  GTEISLMFSSRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 485

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 486  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 545

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFLITRKDTFYDRA+F LMCSYMGD MDPIDLP+PA++KPVELWTGKQLFSVL+RPH+
Sbjct: 546  TSSFLITRKDTFYDRASFSLMCSYMGDAMDPIDLPTPALVKPVELWTGKQLFSVLLRPHA 605

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
             M+VY+NLTV E+   K+RETMCPKD +VY RNSELI GQLGKAT+GNG+KDGL+SVLLR
Sbjct: 606  KMRVYLNLTVAEKSYGKSRETMCPKDGFVYIRNSELISGQLGKATVGNGSKDGLYSVLLR 665

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DY+AHAAA+CMNRLAKLSARWIGNHGFSIGI+DV PG+ LN++K  TI+K Y  C   I 
Sbjct: 666  DYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVTPGDVLNKEKKLTIDKEYGQCTDYIE 725

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             YN GKL   PGC+ A+TLEAKI+GTLN IRE TANVC+  L+WRNSPLIMSQCGSKGSP
Sbjct: 726  SYNSGKLELLPGCNRAETLEAKITGTLNNIRERTANVCMKNLNWRNSPLIMSQCGSKGSP 785

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFF 1788
            INI QMIACVGQQSVGGRRAPNGF++R+LPHF R +K P AKGFV NSFY+GL+ATEFFF
Sbjct: 786  INICQMIACVGQQSVGGRRAPNGFVDRTLPHFERGAKDPDAKGFVQNSFYTGLSATEFFF 845

Query: 1787 HTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDP 1608
            HTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDLS  YD+TVR++SG++VQ +YG DGMDP
Sbjct: 846  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVQYDNTVRNASGSIVQFVYGGDGMDP 905

Query: 1607 AQMEGKSGTPLNLARLFSKIKATCPAT---GAYATLFQSDIEQAIDERLSKHDMTLEGGC 1437
            AQME KSG PLN  RLF K KATCPA           +  + + I+ERL K  M LE  C
Sbjct: 906  AQMEEKSGLPLNFERLFMKAKATCPAAEEKSLNTEEIKKIVNEMIEERLPKSTMDLEEEC 965

Query: 1436 ---------------LDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNL-- 1308
                           L+ F KSL  F+ ++                S   +KLNE     
Sbjct: 966  LKDPPPSDTPSKKETLETFDKSLKSFIEKK-------------HPSSDLMLKLNEGGYSG 1012

Query: 1307 --KHVLENVAAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTL 1134
              +  LE +A+ +SGI+  QL VFL++CI+RY++K++EAGTAIGAIGAQSIGEPGTQMTL
Sbjct: 1013 EDQVSLEKLASNVSGITRNQLVVFLETCITRYNSKKIEAGTAIGAIGAQSIGEPGTQMTL 1072

Query: 1133 KTFHFAGVASMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTEL 954
            KTFHFAGVASMNVTLGVPRIKEIINA+KRI+TPIIT  L  +D++  AKLVKG IEKT L
Sbjct: 1073 KTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTALQSNDNDIIAKLVKGRIEKTLL 1132

Query: 953  KEVAKSVNLIVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIG 774
            ++VAKS+     SR A + + LD+++I+  Q+ IDA TVK+S+LQ  + K+K++ +KV+ 
Sbjct: 1133 EQVAKSIKTSQASRSASIVITLDMKRIQGAQLSIDAYTVKESVLQTPRMKLKEQQVKVLN 1192

Query: 773  PYKLEVHPPVVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVI-SIAKE------EYCLL 615
            P KLEV     DRSKL F++  IK  L  V++KGI  VER +I + AKE      +  LL
Sbjct: 1193 PRKLEV-VLQADRSKLHFEVHAIKNKLSKVVVKGINSVERVIIVNEAKEKDPTRKKLKLL 1251

Query: 614  VEGTNLLAVMGSPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRH 435
            VEGT LL+VMG+ GV G  T SNHI+EV +TLGIEAAR+ I++EI +TMSSHGM+IDIRH
Sbjct: 1252 VEGTGLLSVMGTDGVDGKNTTSNHIIEVQQTLGIEAARKKIIEEIHFTMSSHGMTIDIRH 1311

Query: 434  MMLLADVMTYKGEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSEC 255
            MMLLAD+MT+KGEVLGITR  + +M+DSVLMLASFE+TA+HLF AS+ GR ++I+G SEC
Sbjct: 1312 MMLLADLMTFKGEVLGITRHGVQRMRDSVLMLASFEKTADHLFNASVSGRVDRIEGVSEC 1371

Query: 254  VIMGVPMQLGSGILKVKQKYELRELAYGPAPII 156
            +IMG+PMQ+G+G+LKV+Q  +  EL YGP PII
Sbjct: 1372 IIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1404


>ref|XP_009800353.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nicotiana
            sylvestris] gi|698510366|ref|XP_009800354.1| PREDICTED:
            DNA-directed RNA polymerase III subunit rpc1 [Nicotiana
            sylvestris]
          Length = 1390

 Score = 1807 bits (4681), Expect = 0.0
 Identities = 919/1396 (65%), Positives = 1106/1396 (79%), Gaps = 21/1396 (1%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            I FTKEPYIEDVGP+K+KSI+F++ S  EI K GEV+VYR   YD+T+KPI +GLLDPRM
Sbjct: 8    IQFTKEPYIEDVGPRKIKSIQFSLFSEVEILKLGEVEVYRGVYYDSTKKPIPNGLLDPRM 67

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  KN  C TC  +F +CPGH+GYL L LPV+NVGY  T++++LKCICK C+ ILL +K
Sbjct: 68   GPPNKNGGCETCHGNFRECPGHYGYLVLTLPVYNVGYLGTVVDLLKCICKCCSSILLDDK 127

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
            E   +LK MR P+ E L K+ L KK++ +C       K   C +CG++NG VKK    L 
Sbjct: 128  ERRVFLKKMRNPRTEPLMKSELQKKVVKKCTSMTSGQKSVTCSKCGYMNGMVKKGQ--LK 185

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I H+     +  L+E   A+S + D + + +    + P  V +LFK M D+DCELLYL D
Sbjct: 186  IIHERG---NRFLDEFNAAISHKIDLKTSVSVPPEIDPKAVYSLFKNMSDEDCELLYLSD 242

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQG-GLHNF 3405
            RPEKL++T I VPP+AIRPS+F+D G+ SNE+DIT +L  I+Q NA L E +      N 
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQENARLLEDISDTSFQNK 302

Query: 3404 PIH-WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
             ++ W  LQ+ VAQYINS+VRGVP ++  SKP  GF QR+KGKQGRFRGNLSGKRVE+TG
Sbjct: 303  SLNAWVGLQMEVAQYINSDVRGVPLHLQASKPMSGFTQRLKGKQGRFRGNLSGKRVEYTG 362

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIPILMA+ILTYPERVS +NIEKLRQCVRNGP KYPGA F+  PD
Sbjct: 363  RTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIKHPD 422

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G++++L + +RKR ADELK+GY V+RHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 423  GTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 482

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 483  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 542

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFLITRKDTFYDRA+F L+CSYMGDGMDPIDLP+PA++KPVELWTGKQLF VL+RP+S
Sbjct: 543  TSSFLITRKDTFYDRASFSLICSYMGDGMDPIDLPTPALIKPVELWTGKQLFGVLLRPYS 602

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
             M+VYVNLTV E+      ETMCP D +VYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 603  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 662

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE+L ++K + I + Y  C+  I 
Sbjct: 663  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQEEIYQNYKKCEDRIQ 722

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             +NEGKL  QPGCDAAQTLEA+++  LNK+R++   +C+ ALHWRNSPLIMSQCGSKGSP
Sbjct: 723  QFNEGKLAVQPGCDAAQTLEAEVTMALNKVRDDIGKICMKALHWRNSPLIMSQCGSKGSP 782

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFF 1788
            INISQMIACVGQQSVGGRRAP+GFI+RSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 783  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAKGFVAHSFFDGLSATEFFF 842

Query: 1787 HTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDP 1608
            HTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDL+ YYD+TVR++S +++Q +YGDDGMDP
Sbjct: 843  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDNTVRNASASIIQFMYGDDGMDP 902

Query: 1607 AQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDA 1428
            +QME K G PLN +RLF K+KATCP  G    L  S+I + ++ERLS HDM+ EGGC +A
Sbjct: 903  SQMEEKKGRPLNFSRLFMKVKATCPPRGEKG-LSYSEICEIVNERLSYHDMSPEGGCSEA 961

Query: 1427 FRKSLSDFLCERITK-LNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQL 1251
            FR SLSDFL + + + L   R AL L ++            +  LENVA  ISGI+ +QL
Sbjct: 962  FRASLSDFLIKNLAETLKRLREALLLGEEQYAG------GDREYLENVALNISGITKKQL 1015

Query: 1250 QVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1071
            QVFL+ CISRYH KRLE+GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1016 QVFLNMCISRYHLKRLESGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1075

Query: 1070 EIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVK 891
            EIINA+K+I+TPIITA L+   +   A+++K  IEKT L +VAKSV +++ SR A + + 
Sbjct: 1076 EIINAAKKINTPIITAKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVMASRLASIAIT 1135

Query: 890  LDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLL 711
            LD+E I+  Q+ IDA TVKQSILQ  K K+K++ +KV+ P KLEV P   ++ KL F+L 
Sbjct: 1136 LDMETIQVSQLCIDAYTVKQSILQTPKIKLKEQQVKVLNPRKLEVFPQ-ANKDKLHFELH 1194

Query: 710  NIKAMLPNVIIKGIPDVERAVIS----------IAKEEYCLLVEGTNLLAVMGSPGVYGS 561
             +K  LP V++KGI  V+RAV++          +  E Y LLVEGT LLAVMG  GV G 
Sbjct: 1195 RLKNKLPAVVVKGITTVQRAVVNKEQERDRKSDVKGETYELLVEGTGLLAVMGIDGVDGR 1254

Query: 560  KTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGIT 381
             TKSNHI+EV + LGIEAAR +I+DEI YTMSSHGM+ID+RHMMLLAD+MTYKGEVLGIT
Sbjct: 1255 NTKSNHIMEVQQRLGIEAARISIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGIT 1314

Query: 380  RFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQ 201
            R  + KMKDSVLMLASFE+T +HLF AS+ GR +KI+G SEC+IMG+PMQ+G+G+ K++Q
Sbjct: 1315 RHGVQKMKDSVLMLASFEKTTDHLFSASVNGRDDKIEGVSECIIMGIPMQIGTGMFKLRQ 1374

Query: 200  KYELRELAYGPAPIIS 153
              +  EL Y   P++S
Sbjct: 1375 CVQQVELNYQSEPMLS 1390


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Setaria
            italica]
          Length = 1397

 Score = 1805 bits (4674), Expect = 0.0
 Identities = 913/1410 (64%), Positives = 1119/1410 (79%), Gaps = 28/1410 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  +  TKEP+IEDVG +++KSIRF++LSGSEI K  EVQV+ S +Y+   KP+ +
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60

Query: 4118 GLLDPRMGPVKNRE----CTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICK 3951
            GLLD RMG    ++    C+TC   F +CPGHFGYLKLALPVFNVG+F  I+++LKCICK
Sbjct: 61   GLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICK 120

Query: 3950 SCARILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANS 3771
             C+R+LL+EK+   +LK MR P+ + LQK+A++KK+  +CK + CPRC + NG VKK   
Sbjct: 121  GCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRV 180

Query: 3770 ILGIAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLY 3591
             L + HD SK+ DG  EE + A+  +K+ + + + V +L PA  L+LF++M+D+DCELL 
Sbjct: 181  GLIVIHDCSKILDGHTEELKNALQHKKE-KVSTSSVRMLDPATALSLFRRMVDEDCELLN 239

Query: 3590 LYDRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQ-GGL 3414
            L DRPEKLI+T+IAVPPV IRPS+ +     SNED IT  L SI+ +N+ L+E+LQ GGL
Sbjct: 240  LGDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGL 299

Query: 3413 HNFPIH-WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVE 3237
             +     W+ LQ+ V +++NS+     A   P    RG VQR+KGK GRFRGNLSGKR E
Sbjct: 300  FSKCFDCWQQLQLQVVEFVNSD-----APCLPESQHRGLVQRLKGKTGRFRGNLSGKRTE 354

Query: 3236 FTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVL 3057
            +TGRTVISPDPNL+ITEVAIP+LMA++LTYPERVSNYN+EKLRQC+RNGP K+PGANF++
Sbjct: 355  YTGRTVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFII 414

Query: 3056 TPDGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPW 2877
            TPDG+KL+L YG+R+  A +LK GY VERHLE GD+VLFNRQPSLHRMSIMSHRARIMPW
Sbjct: 415  TPDGTKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPW 474

Query: 2876 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 2697
            RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ
Sbjct: 475  RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 534

Query: 2696 DFLTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVR 2517
            DFLTSSFL+TRKD FYDR++F L+CSY+GD M+ IDLP+PA++KP+ELWTGKQLFSVLVR
Sbjct: 535  DFLTSSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVR 594

Query: 2516 PHSHMKVYVNLTVMER----------------DCMKNRETMCPKDRYVYFRNSELICGQL 2385
            P++  KV++NL V E+                + M  RETMCP D YVYFRNSEL+ GQ+
Sbjct: 595  PNARTKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQV 654

Query: 2384 GKATLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLN 2205
            GKATLGNGNKDG++SVLLRDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN
Sbjct: 655  GKATLGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLN 714

Query: 2204 EKKGKTIEKGYWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNA 2025
             +K K I++GY  C  LI  + +G L   PGC+AAQTLE KI+G LN+IR    NVC++ 
Sbjct: 715  RQKKKKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDT 774

Query: 2024 LHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAA 1845
            LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFI+R+LPHFP +SKTPAA
Sbjct: 775  LHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAA 834

Query: 1844 KGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTV 1665
            KGFVANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS +YD TV
Sbjct: 835  KGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTV 894

Query: 1664 RDSSGNVVQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQA 1485
            R++SG +VQ +YGDDGMDPA+MEGK GTPLNL +LF K+ ATCP  G   TL   DI+Q 
Sbjct: 895  RNASGGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRG-LDTLSPDDIKQM 953

Query: 1484 IDERLSKHDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLK 1305
            ++++L++H  + +GGC + F++ L  FL ERI  L  TR+AL LD+  +        N  
Sbjct: 954  LEDKLTQHKTSSDGGCSEEFKECLKKFLEERIQLLKCTRKALHLDEKHVGK------NDS 1007

Query: 1304 HVLENVAAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTF 1125
             + E +AA ISGIS++QLQVFLD+C SRY++K +EAG +IGAIGAQSIGEPGTQMTLKTF
Sbjct: 1008 CIEEIIAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTF 1067

Query: 1124 HFAGVASMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEV 945
            HFAGVASMNVTLGVPRIKEIINA+K+ISTPIIT  L+   D  +A++VKG +EK  L EV
Sbjct: 1068 HFAGVASMNVTLGVPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEV 1127

Query: 944  AKSVNLIVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYK 765
            A ++ +++ S +  + VKLD++ IEAL M I A +V+ SIL H K K+K EH++VI   K
Sbjct: 1128 ASAIKIVLKSSQPNLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAK 1187

Query: 764  LEVHPPVVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAK-----EEYCLLVEGTN 600
            L ++P   D+SKL  +L N+KAMLP VI+KGIP VER VI   K     E+Y LLVEGTN
Sbjct: 1188 LRIYPAGTDKSKLQLELHNLKAMLPKVIVKGIPTVERVVIDERKKEGKLEKYNLLVEGTN 1247

Query: 599  LLAVMGSPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLA 420
            LLAVMG+PGV    TKSNHI+E++ TLGIEAAR++I+DEIQYTM SHGM+ID+RHMMLLA
Sbjct: 1248 LLAVMGTPGVDARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLA 1307

Query: 419  DVMTYKGEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGV 240
            D+MTYKGEVLGITR+ + KMK SVLMLASFE+T+EHLF AS  GR ++I+G SEC+IMG+
Sbjct: 1308 DLMTYKGEVLGITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGI 1367

Query: 239  PMQLGSGILKVKQKYE-LRELAYGPAPIIS 153
            PMQLG+GILKV+Q+ + L EL Y P PI+S
Sbjct: 1368 PMQLGTGILKVRQRLDHLPELKYQPDPILS 1397


>ref|XP_009610317.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Nicotiana tomentosiformis]
            gi|697112870|ref|XP_009610318.1| PREDICTED: DNA-directed
            RNA polymerase III subunit rpc1 isoform X1 [Nicotiana
            tomentosiformis]
          Length = 1390

 Score = 1803 bits (4671), Expect = 0.0
 Identities = 915/1396 (65%), Positives = 1108/1396 (79%), Gaps = 21/1396 (1%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            I FTK+PYIEDVGP+K+KSI+F++ S +EI K GEV+VYR   Y++T+KPI +GLLDPRM
Sbjct: 8    IQFTKQPYIEDVGPRKIKSIQFSLFSEAEILKLGEVEVYRGVYYESTKKPIPNGLLDPRM 67

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  KN  C TC  +F +CPGH+GYL L LPV+NVGY  T++++LKCICK C+ ILL +K
Sbjct: 68   GPPNKNGGCETCHGNFRECPGHYGYLVLTLPVYNVGYLGTVVDLLKCICKCCSSILLDDK 127

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
            EC  +LK MR P+ E L K+ L KK++ +C       K   C +CG++NG VKK    L 
Sbjct: 128  ECRVFLKKMRNPRTEPLMKSELQKKVVKKCTSMTSGQKTVTCSKCGYMNGMVKKGQ--LK 185

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I H+     +  L+E   A+S + + + + +    + P  V +LFK M D+DCELLYL D
Sbjct: 186  IIHERG---NRFLDEFNAAISHKIELKTSVSVPPEIDPKAVYSLFKNMSDEDCELLYLSD 242

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQG-GLHNF 3405
            RPEKL++T I VPP+AIRPS+F+D G+ SNE+DIT +L  I+Q+NA L E +      N 
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANARLLEDISDTSFQNK 302

Query: 3404 PIH-WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
             +  W  LQ+ VAQYINS+VRGVP ++  SKP  GF QR+KGKQGRFRGNLSGKRVE+TG
Sbjct: 303  SLSAWVDLQMEVAQYINSDVRGVPLHLQASKPMSGFTQRLKGKQGRFRGNLSGKRVEYTG 362

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIPILMA+ILTYPERVS +NIEKLRQCVRNGP KYPGA F+  PD
Sbjct: 363  RTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIKHPD 422

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G++++L + +RKR ADELK+GY V+RHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 423  GTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 482

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 483  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 542

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFLITRKDTFY+RA+F L+CSYMGDGMDPIDLP+PA++KPVELWTGKQLF VL+RP+S
Sbjct: 543  TSSFLITRKDTFYERASFSLICSYMGDGMDPIDLPTPALIKPVELWTGKQLFGVLLRPYS 602

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
             M+VYVNLTV E+      ETMCP D +VYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 603  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 662

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE L ++K + I + Y  C+  I 
Sbjct: 663  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGEILVKQKLEEIHQNYKKCEDRIQ 722

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             +NEGKL  QPGCDAAQTLEA+++ +LNK+R++   +C+ ALHWRNSPLIMSQCGSKGSP
Sbjct: 723  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKGSP 782

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFF 1788
            INISQMIACVGQQSVGGRRAP+GFI+RSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 783  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAKGFVAHSFFDGLSATEFFF 842

Query: 1787 HTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDP 1608
            HTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDL+ YYD+TVR++S +++Q +YGDDGMDP
Sbjct: 843  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDNTVRNASTSIIQFMYGDDGMDP 902

Query: 1607 AQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDA 1428
            +QME K G PLN +RLF K+KATCP  G   +L  S+I + ++ERLS HDM+ EGGC +A
Sbjct: 903  SQMEEKKGRPLNFSRLFMKVKATCPPRGE-KSLSYSEICEIVNERLSYHDMSPEGGCSEA 961

Query: 1427 FRKSLSDFLCERITK-LNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQL 1251
            FR SLSDFL + + + L   R AL LD +            +  LEN+A  ISGI+ +QL
Sbjct: 962  FRASLSDFLIKHLAETLKRLREALLLDGEQYAG------GDREYLENIALNISGITKKQL 1015

Query: 1250 QVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1071
            QVFL+ CISRYH KRLE+GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1016 QVFLNMCISRYHLKRLESGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1075

Query: 1070 EIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVK 891
            EIINA+K+I+TPIITA L+   +   A+++K  IEKT L +VAKSV +++ SR A + + 
Sbjct: 1076 EIINAAKKINTPIITAKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVMASRLASIAIT 1135

Query: 890  LDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLL 711
            LD+E I+  Q+ IDA TVKQSILQ  K K+K++ +KV+   KLEV P   ++ KL F+L 
Sbjct: 1136 LDMETIQVSQLCIDAYTVKQSILQTPKIKLKEQQVKVLNHRKLEVFPQ-ANKDKLHFELH 1194

Query: 710  NIKAMLPNVIIKGIPDVERAVIS----------IAKEEYCLLVEGTNLLAVMGSPGVYGS 561
             +K  LP V++KGI  V+RAV++          +  E Y LLVEGT LLAVMG  GV G 
Sbjct: 1195 RLKNKLPVVVVKGITTVQRAVVNKEQERDRKSDVKGETYELLVEGTGLLAVMGIDGVDGR 1254

Query: 560  KTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGIT 381
             TKSNHI+EV + LGIEAAR +I+DEI YTMSSHGM+ID+RHMMLLAD+MTYKGEVLGIT
Sbjct: 1255 NTKSNHIMEVQQRLGIEAARISIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGIT 1314

Query: 380  RFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQ 201
            R  + KMKDSVLMLASFE+T +HLF AS+ GR +KI+G SEC+IMG+PMQ+G+G+ K++Q
Sbjct: 1315 RHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGMFKLRQ 1374

Query: 200  KYELRELAYGPAPIIS 153
              +  EL Y   P++S
Sbjct: 1375 CVQQVELNYQSEPMLS 1390


>ref|XP_008669237.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Zea mays]
          Length = 1394

 Score = 1801 bits (4666), Expect = 0.0
 Identities = 916/1407 (65%), Positives = 1109/1407 (78%), Gaps = 25/1407 (1%)
 Frame = -3

Query: 4298 MAGEKPAIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEH 4119
            MA  +  +  TKEP+IEDVG +++KSIRF++LSGSEI K  EVQV+ + +YD    P+ +
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPN 60

Query: 4118 GLLDPRMG-PVKNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCA 3942
            GLLDPRMG P K  +C TC   F+DCPGHFGYLKLALPVFNVG+F  I+++LKCICKSC+
Sbjct: 61   GLLDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 3941 RILLSEKECIAYLKMMRRPKLEVLQKNALVKKIIGRCKPSRCPRCGFINGTVKKANSILG 3762
            R+LL EK+   +LK MR P+ + LQK+A +KK+  +CK S CPRC + NG VKK  + L 
Sbjct: 121  RVLLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            + HD SKV DG  EE + A+  +K+ + + + V VL PA VL+LF++M+D+DCELL L D
Sbjct: 181  VVHDCSKVLDGHTEELKNALQNKKE-KVSASSVLVLDPATVLSLFRRMIDEDCELLNLGD 239

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFP 3402
            RPEKLI+T+IAVPPV IRPS+ +     SNED IT  L SI+ +N+ L+E+L  G     
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTK 299

Query: 3401 IH--WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
                W+ LQ+ V +Y+NS+   +P +       RG VQR+KGK GRFRGNLSGKR E+TG
Sbjct: 300  CFDCWQYLQLQVVEYVNSDAPSLPES-----QHRGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIP+LMA++LTYPERVSNYNIEKLRQC+RNGP KYPGANFV  PD
Sbjct: 355  RTVISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPD 414

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G K +L YG+R+  A +LK G  VERHLE GD+VLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 415  GMKQSLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 474

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 475  RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 534

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFL+TRKDTFYDR++F L+CSY+GDGM+ IDLP+PA++KPVELWTGKQLFSVLVRP++
Sbjct: 535  TSSFLVTRKDTFYDRSSFTLLCSYLGDGMENIDLPTPALIKPVELWTGKQLFSVLVRPNA 594

Query: 2507 HMKVYVNLTVMER----------------DCMKNRETMCPKDRYVYFRNSELICGQLGKA 2376
            H KV++NL V E+                + M  RETMCP D YVYFRNSEL+ GQ+GKA
Sbjct: 595  HTKVFLNLAVQEKIYSKKKGKKEGGEEVKETMCGRETMCPNDGYVYFRNSELLSGQVGKA 654

Query: 2375 TLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKK 2196
            TLGNGNKDGL+SVLLRDYN+HAAASCMNRLAK SAR+IGNHGFSIG+DDVQPGE LN +K
Sbjct: 655  TLGNGNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQK 714

Query: 2195 GKTIEKGYWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHW 2016
             K I+ GY  C  LI  + +G L   PGC+AAQTLE  I+G LN+IR    NVC++ LHW
Sbjct: 715  KKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHW 774

Query: 2015 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGF 1836
            RNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF+ R+LPHFP +SKTPAAKGF
Sbjct: 775  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGF 834

Query: 1835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDS 1656
            VANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMK LEDLS +YD TVR++
Sbjct: 835  VANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNA 894

Query: 1655 SGNVVQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDE 1476
            SG +VQ +YGDDGMDPA+MEGK G PLNL +LF K+ ATCP  G+  TL    I+Q +++
Sbjct: 895  SGGIVQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGS-DTLSPVGIKQMLED 953

Query: 1475 RLSKHDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVL 1296
            +  +HD + +GGC   F+K+L++FL +RI  +  TRRAL L +D +      E     + 
Sbjct: 954  KFLQHDTSSDGGCSAEFKKNLTEFLDKRIELMKCTRRALHLHEDHV------EKKDSCLE 1007

Query: 1295 ENVAAKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1116
            E++AA ISGIS++QLQVFLD+C+SRY +K++EAG +IGAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1008 ESIAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFA 1067

Query: 1115 GVASMNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKS 936
            GVASMNVTLGVPRIKEIINA+K+ISTPIITA L+   D  +A++VKG +EK  L EVA +
Sbjct: 1068 GVASMNVTLGVPRIKEIINAAKKISTPIITAQLLSRKDVLSARIVKGSMEKAVLGEVAAT 1127

Query: 935  VNLIVTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEV 756
            +  ++ S    + VKLD++ IE L M I A +VK SIL H K K+K EH++VI   KL +
Sbjct: 1128 IQTVLKSSLPNLVVKLDMQLIETLHMGISADSVKLSILNHPKLKLKSEHVRVIDRAKLRI 1187

Query: 755  HPPVVDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVISIAK-----EEYCLLVEGTNLLA 591
            +P   D+ KL  +L N+K++LP VI+KGIP VER VI   K     E Y LLVEGTNLLA
Sbjct: 1188 YPAGTDKLKLQLELHNLKSILPKVIVKGIPTVERVVIDEVKVNNATERYQLLVEGTNLLA 1247

Query: 590  VMGSPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVM 411
            VMG+PGV   KTKSNHI+E ++TLGIEAAR++I+DEIQYTM SHGM+ID RHMMLLAD+M
Sbjct: 1248 VMGTPGVDARKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLM 1307

Query: 410  TYKGEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQ 231
            TYKGE+LGITR+ + KMK SVLMLASFE+TAEHLF AS  GR ++I+G SEC+IMG+PMQ
Sbjct: 1308 TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGRQDQIEGVSECIIMGIPMQ 1367

Query: 230  LGSGILKVKQKYE-LRELAYGPAPIIS 153
            LG+GILKV+Q+ + + E  Y P PI+S
Sbjct: 1368 LGTGILKVRQRLDHVPEFKYQPDPILS 1394


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1801 bits (4665), Expect = 0.0
 Identities = 917/1395 (65%), Positives = 1108/1395 (79%), Gaps = 20/1395 (1%)
 Frame = -3

Query: 4280 AIAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPR 4101
            ++  TK+PYIEDVGP+K+KSI+F++ S SEI K  EV+VY    Y++T+KPI++GLLDPR
Sbjct: 7    SLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLDPR 66

Query: 4100 MGPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSE 3924
            MGP  KN  C TC  +F +CPGH+GYL LALPV+NVGY  T+++ILKCICK C+ ILL +
Sbjct: 67   MGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDD 126

Query: 3923 KECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSIL 3765
            KE    LK MR P+ E L+K+ L KK++ RC       K + C +CG++NG VKK    L
Sbjct: 127  KERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKLQ--L 184

Query: 3764 GIAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLY 3585
             I H+     +  L+E  +A+S +++ +A+ +    L P  V +LFK M D+DCELLYL 
Sbjct: 185  KITHEQG---NRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLS 241

Query: 3584 DRPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNF 3405
            DRPEKL++T I VPP+AIRPS+F+D G+ SNE+DIT +L  I+Q+NA+L + +       
Sbjct: 242  DRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPVK 301

Query: 3404 PIH-WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
             ++ W  LQ+ VAQYINS+VRGVP ++   +P  GF QR+KGKQGRFRGNLSGKRVE+TG
Sbjct: 302  SLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIPILMAQILTYPERVS +NIEKLRQCVRNGP KYPGA F+  PD
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            GS+++L + +RKR ADELK+GY V+RHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFLITRKDTFY+RA+F L+CSYMGD MDP DLPSPA +KPVELWTGKQLF +L+RP+S
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
             M+VYVNLTV E+      ETMCP D +VYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE+L ++K   I + Y  C+  I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             +NEGKL  QPGCDAAQTLEA+++ +LNK+R++   +C+ AL WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFF 1788
            INISQMIACVGQQSVGGRRAP+GFI+RSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 1787 HTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDP 1608
            HTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDL+ YYD TVR++S  +VQ +YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 1607 AQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDA 1428
            +QME K G PLN +RLF K+KATCP  G   +L  S+I + ++ERLS HDMT EGGC +A
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCP-PGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEA 960

Query: 1427 FRKSLSDFLCERITK-LNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQL 1251
            FR SLSDFL + + + L N R +L L ++        E + +  LE +A  ISGI+ RQL
Sbjct: 961  FRSSLSDFLIKNLAETLKNLRESLLLGEEQY------EGDDRGYLEKIALNISGITKRQL 1014

Query: 1250 QVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1071
            QVFL++CISRYH KRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1015 QVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1074

Query: 1070 EIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVK 891
            EIINA+K+I+TPIIT  L+   +   A+++K  IEKT L +VAKSV +++ SR A + + 
Sbjct: 1075 EIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLASIAIS 1134

Query: 890  LDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLL 711
            LD+E I+  Q+ IDA TVKQSILQ +K K+K+  IKV+ P KLEV P   ++ KL F+L 
Sbjct: 1135 LDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVFPQ-ANKDKLHFELH 1193

Query: 710  NIKAMLPNVIIKGIPDVERAVIS----------IAKEEYCLLVEGTNLLAVMGSPGVYGS 561
             +K  LP V++KGI  V+RAV++          +  E Y LLVEGT LLAVMG  GV G 
Sbjct: 1194 RLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIEGVDGR 1253

Query: 560  KTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGIT 381
             TKSNHI+EV  TLGIEAAR +I+DEI YTMSSHGM+ID+RHMMLLAD+MTYKGEVLGIT
Sbjct: 1254 YTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGIT 1313

Query: 380  RFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQ 201
            R  + KMKDSVLMLASFE+T +HLF AS+ GR +KI+G +EC+IMG+PM +G+G+ K++Q
Sbjct: 1314 RHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGMFKLRQ 1373

Query: 200  KYELRELAYGPAPII 156
            + E  EL Y P PII
Sbjct: 1374 RVEQVELNYQPDPII 1388


>ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Gossypium raimondii] gi|763752836|gb|KJB20224.1|
            hypothetical protein B456_003G139100 [Gossypium
            raimondii]
          Length = 1398

 Score = 1800 bits (4661), Expect = 0.0
 Identities = 928/1409 (65%), Positives = 1107/1409 (78%), Gaps = 34/1409 (2%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            I FTK PYIEDVGP+++KSI+F+M S SEI K  EVQVY+   YD   +PIE GLLDPRM
Sbjct: 8    IVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQSRPIEGGLLDPRM 67

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  K+ +C TCD SF DCPGH+GYL L LPV+NVGY  TI++ILKCICKSC+RILL +K
Sbjct: 68   GPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLDDK 127

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC------KPSRCPRCGFINGTVKKANSILGI 3759
                YLK MR PK E L+K  ++K ++ +C      K  +C RCG++NGTVKKA  ++G+
Sbjct: 128  LAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKAPKMIGV 187

Query: 3758 AHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYDR 3579
             HD SKV+D SLEE + A+S  K+S+++ N  +VL+P +VL+LFK+M D DCELLYL DR
Sbjct: 188  FHDRSKVNDNSLEELKSAISHTKESKSSINTSSVLNPVKVLSLFKRMTDVDCELLYLSDR 247

Query: 3578 PEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQGGLHNFPI 3399
            PEK IIT+IAVPP AIRPS+ +D GS SNE+DIT +L  I+Q+N++L++ L     N   
Sbjct: 248  PEKFIITNIAVPPTAIRPSVPVD-GSQSNENDITERLKRIIQANSSLRQQLVDS--NAAF 304

Query: 3398 H----WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFT 3231
            H    W++LQV VAQYINS+VRGVP  + P++P  GF+QR+KGKQGRFRGNLSGKRVEFT
Sbjct: 305  HCLNGWDLLQVDVAQYINSDVRGVPTEMQPARPLSGFLQRLKGKQGRFRGNLSGKRVEFT 364

Query: 3230 GRTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTP 3051
            GRTVISPDPNLKITEVAIPI MA+IL+YPERVS++NIEKLRQCVRNGP KYPGA  V  P
Sbjct: 365  GRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGAVKVRYP 424

Query: 3050 DGSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRT 2871
            DGS   L    RKR+ADELK+G  V+RHLE GDIVLFNRQPSLHRMSIM HRARIMPWRT
Sbjct: 425  DGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRT 484

Query: 2870 LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 2691
            LRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGE+LVASTQDF
Sbjct: 485  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLVASTQDF 544

Query: 2690 LTSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPH 2511
            LTSSFLITR+DTFYDRA F L+CSYMGD MD IDLP+P +LKPVELWTGKQLF+VL+RPH
Sbjct: 545  LTSSFLITRRDTFYDRATFSLICSYMGDAMDLIDLPTPTLLKPVELWTGKQLFNVLLRPH 604

Query: 2510 SHMKVYVNLTVMERDCMK-----------NRETMCPKDRYVYFRNSELICGQLGKATLGN 2364
            + ++VY+NLTV ER+  +             ETMCP D +VY RNSEL+CGQLGKATLGN
Sbjct: 605  ASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELLCGQLGKATLGN 664

Query: 2363 GNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTI 2184
            GNKDGL+S+LLRDYNAHAAA+CMNRLAK+SARWIGNHGFSIGIDDVQPG+ LN+ KG T+
Sbjct: 665  GNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLNDAKGVTL 724

Query: 2183 EKGYWVCDGLILDYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSP 2004
               Y  CD  I  +NEGKL+ +PGCDAAQTLEA I+  LNKIR+ET  VC+  LHWRNSP
Sbjct: 725  SGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMRELHWRNSP 784

Query: 2003 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANS 1824
            LIMSQCGSKGS INISQMIACVGQQSVGGRRAPNGFI+RSLPHF R SKTPAAKGFVANS
Sbjct: 785  LIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANS 844

Query: 1823 FYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNV 1644
            FYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRL+K+LEDLS +YD+T R++SG +
Sbjct: 845  FYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCRNASGCI 904

Query: 1643 VQLIYGDDGMDPAQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSK 1464
            VQ IYGDDGMDPA MEGKSG PLN  RL  K+KATCP       L    I Q ++E++ K
Sbjct: 905  VQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVD-QKYLPADAIPQMLEEQVVK 963

Query: 1463 HDMTLEGGCLDAFRKSLSDFLCERITKLNNTRRALGLDDDSIQTIKLNEYNLKHVLENVA 1284
            HD   +G C +AF+KSL  FL     + N  +R + L  +S Q           +LE+V+
Sbjct: 964  HDP--DGVCSEAFKKSLKGFL---EGQKNELKRVMQLVSNSAQK--------SEILEDVS 1010

Query: 1283 AKISGISSRQLQVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1104
             KI GI+ RQL+VF+  CI RY +K +EAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1011 HKICGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1070

Query: 1103 MNVTLGVPRIKEIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLI 924
            MN+T GVPRIKEIINA+K+ISTPIITA L  D +   A++VKG IEKT L +VAKS+ ++
Sbjct: 1071 MNITQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGRIEKTVLGQVAKSIKIV 1130

Query: 923  VTSREAFVRVKLDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPV 744
            +TSR A V + LD+E+I+  Q+ IDA  VK+SILQ  K K+K++H+KV+   KLEV PP 
Sbjct: 1131 MTSRLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVPP- 1189

Query: 743  VDRSKLLFQLLNIKAMLPNVIIKGIPDVERAVIS-----------IAKEEYCLLVEGTNL 597
             DRS++ F+L ++K +LP V++KGI  VER VI+            AK+ Y L VEG  L
Sbjct: 1190 ADRSRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGL 1249

Query: 596  LAVMGSPGVYGSKTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLAD 417
              VMG  G+ G KT SNH++E+ + LGIEAAR  I++EI  TM+SHGMSIDIRHMMLL D
Sbjct: 1250 QTVMGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLGD 1309

Query: 416  VMTYKGEVLGITRFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVP 237
            VMT++GEVLGITRF + KM  S+LMLASFE+T +HLF AS+ GR +KI+G +EC+IMG+P
Sbjct: 1310 VMTFRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIP 1369

Query: 236  MQLGSGILKVKQKYE-LRELAYGPAPIIS 153
            MQLG+GILKV Q+ + L  L YG  P++S
Sbjct: 1370 MQLGTGILKVMQRVDPLPLLQYGADPVLS 1398


>ref|XP_009610319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Nicotiana tomentosiformis]
            gi|697112874|ref|XP_009610320.1| PREDICTED: DNA-directed
            RNA polymerase III subunit rpc1 isoform X2 [Nicotiana
            tomentosiformis]
          Length = 1375

 Score = 1797 bits (4654), Expect = 0.0
 Identities = 910/1380 (65%), Positives = 1100/1380 (79%), Gaps = 21/1380 (1%)
 Frame = -3

Query: 4277 IAFTKEPYIEDVGPQKLKSIRFTMLSGSEITKFGEVQVYRSDLYDTTRKPIEHGLLDPRM 4098
            I FTK+PYIEDVGP+K+KSI+F++ S +EI K GEV+VYR   Y++T+KPI +GLLDPRM
Sbjct: 8    IQFTKQPYIEDVGPRKIKSIQFSLFSEAEILKLGEVEVYRGVYYESTKKPIPNGLLDPRM 67

Query: 4097 GPV-KNRECTTCDASFNDCPGHFGYLKLALPVFNVGYFPTIIEILKCICKSCARILLSEK 3921
            GP  KN  C TC  +F +CPGH+GYL L LPV+NVGY  T++++LKCICK C+ ILL +K
Sbjct: 68   GPPNKNGGCETCHGNFRECPGHYGYLVLTLPVYNVGYLGTVVDLLKCICKCCSSILLDDK 127

Query: 3920 ECIAYLKMMRRPKLEVLQKNALVKKIIGRC-------KPSRCPRCGFINGTVKKANSILG 3762
            EC  +LK MR P+ E L K+ L KK++ +C       K   C +CG++NG VKK    L 
Sbjct: 128  ECRVFLKKMRNPRTEPLMKSELQKKVVKKCTSMTSGQKTVTCSKCGYMNGMVKKGQ--LK 185

Query: 3761 IAHDLSKVSDGSLEECRLAVSVRKDSQANYNRVNVLHPARVLALFKKMLDKDCELLYLYD 3582
            I H+     +  L+E   A+S + + + + +    + P  V +LFK M D+DCELLYL D
Sbjct: 186  IIHERG---NRFLDEFNAAISHKIELKTSVSVPPEIDPKAVYSLFKNMSDEDCELLYLSD 242

Query: 3581 RPEKLIITDIAVPPVAIRPSIFMDAGSNSNEDDITTKLVSILQSNATLQESLQG-GLHNF 3405
            RPEKL++T I VPP+AIRPS+F+D G+ SNE+DIT +L  I+Q+NA L E +      N 
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANARLLEDISDTSFQNK 302

Query: 3404 PIH-WEMLQVYVAQYINSEVRGVPANVTPSKPTRGFVQRIKGKQGRFRGNLSGKRVEFTG 3228
             +  W  LQ+ VAQYINS+VRGVP ++  SKP  GF QR+KGKQGRFRGNLSGKRVE+TG
Sbjct: 303  SLSAWVDLQMEVAQYINSDVRGVPLHLQASKPMSGFTQRLKGKQGRFRGNLSGKRVEYTG 362

Query: 3227 RTVISPDPNLKITEVAIPILMAQILTYPERVSNYNIEKLRQCVRNGPKKYPGANFVLTPD 3048
            RTVISPDPNLKITEVAIPILMA+ILTYPERVS +NIEKLRQCVRNGP KYPGA F+  PD
Sbjct: 363  RTVISPDPNLKITEVAIPILMARILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIKHPD 422

Query: 3047 GSKLNLSYGNRKRVADELKYGYAVERHLESGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 2868
            G++++L + +RKR ADELK+GY V+RHLE GDIVLFNRQPSLHRMSIMSHRARIMPWRTL
Sbjct: 423  GTEISLMFSSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 482

Query: 2867 RFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2688
            RFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 483  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 542

Query: 2687 TSSFLITRKDTFYDRAAFCLMCSYMGDGMDPIDLPSPAMLKPVELWTGKQLFSVLVRPHS 2508
            TSSFLITRKDTFY+RA+F L+CSYMGDGMDPIDLP+PA++KPVELWTGKQLF VL+RP+S
Sbjct: 543  TSSFLITRKDTFYERASFSLICSYMGDGMDPIDLPTPALIKPVELWTGKQLFGVLLRPYS 602

Query: 2507 HMKVYVNLTVMERDCMKNRETMCPKDRYVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2328
             M+VYVNLTV E+      ETMCP D +VYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 603  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 662

Query: 2327 DYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGEDLNEKKGKTIEKGYWVCDGLIL 2148
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGIDDV PGE L ++K + I + Y  C+  I 
Sbjct: 663  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGEILVKQKLEEIHQNYKKCEDRIQ 722

Query: 2147 DYNEGKLRPQPGCDAAQTLEAKISGTLNKIREETANVCLNALHWRNSPLIMSQCGSKGSP 1968
             +NEGKL  QPGCDAAQTLEA+++ +LNK+R++   +C+ ALHWRNSPLIMSQCGSKGSP
Sbjct: 723  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALHWRNSPLIMSQCGSKGSP 782

Query: 1967 INISQMIACVGQQSVGGRRAPNGFIERSLPHFPRSSKTPAAKGFVANSFYSGLTATEFFF 1788
            INISQMIACVGQQSVGGRRAP+GFI+RSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFF
Sbjct: 783  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPTKSKFPAAKGFVAHSFFDGLSATEFFF 842

Query: 1787 HTMGGREGLVDTAVKTAETGYMSRRLMKSLEDLSTYYDDTVRDSSGNVVQLIYGDDGMDP 1608
            HTMGGREGLVDTAVKTA+TGYMSRRLMK+LEDL+ YYD+TVR++S +++Q +YGDDGMDP
Sbjct: 843  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDNTVRNASTSIIQFMYGDDGMDP 902

Query: 1607 AQMEGKSGTPLNLARLFSKIKATCPATGAYATLFQSDIEQAIDERLSKHDMTLEGGCLDA 1428
            +QME K G PLN +RLF K+KATCP  G   +L  S+I + ++ERLS HDM+ EGGC +A
Sbjct: 903  SQMEEKKGRPLNFSRLFMKVKATCPPRGE-KSLSYSEICEIVNERLSYHDMSPEGGCSEA 961

Query: 1427 FRKSLSDFLCERITK-LNNTRRALGLDDDSIQTIKLNEYNLKHVLENVAAKISGISSRQL 1251
            FR SLSDFL + + + L   R AL LD +            +  LEN+A  ISGI+ +QL
Sbjct: 962  FRASLSDFLIKHLAETLKRLREALLLDGEQYAG------GDREYLENIALNISGITKKQL 1015

Query: 1250 QVFLDSCISRYHAKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1071
            QVFL+ CISRYH KRLE+GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK
Sbjct: 1016 QVFLNMCISRYHLKRLESGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1075

Query: 1070 EIINASKRISTPIITAFLICDDDEKTAKLVKGYIEKTELKEVAKSVNLIVTSREAFVRVK 891
            EIINA+K+I+TPIITA L+   +   A+++K  IEKT L +VAKSV +++ SR A + + 
Sbjct: 1076 EIINAAKKINTPIITAKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVMASRLASIAIT 1135

Query: 890  LDVEKIEALQMKIDAKTVKQSILQHAKTKIKKEHIKVIGPYKLEVHPPVVDRSKLLFQLL 711
            LD+E I+  Q+ IDA TVKQSILQ  K K+K++ +KV+   KLEV P   ++ KL F+L 
Sbjct: 1136 LDMETIQVSQLCIDAYTVKQSILQTPKIKLKEQQVKVLNHRKLEVFPQ-ANKDKLHFELH 1194

Query: 710  NIKAMLPNVIIKGIPDVERAVIS----------IAKEEYCLLVEGTNLLAVMGSPGVYGS 561
             +K  LP V++KGI  V+RAV++          +  E Y LLVEGT LLAVMG  GV G 
Sbjct: 1195 RLKNKLPVVVVKGITTVQRAVVNKEQERDRKSDVKGETYELLVEGTGLLAVMGIDGVDGR 1254

Query: 560  KTKSNHILEVSRTLGIEAARQTIVDEIQYTMSSHGMSIDIRHMMLLADVMTYKGEVLGIT 381
             TKSNHI+EV + LGIEAAR +I+DEI YTMSSHGM+ID+RHMMLLAD+MTYKGEVLGIT
Sbjct: 1255 NTKSNHIMEVQQRLGIEAARISIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGEVLGIT 1314

Query: 380  RFDLPKMKDSVLMLASFEQTAEHLFRASIRGRTNKIDGTSECVIMGVPMQLGSGILKVKQ 201
            R  + KMKDSVLMLASFE+T +HLF AS+ GR +KI+G SEC+IMG+PMQ+G+G+ K++Q
Sbjct: 1315 RHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGMFKLRQ 1374