BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00000916
         (2278 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   659   0.0  
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   656   0.0  
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   649   0.0  
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   642   0.0  
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   637   e-179
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   635   e-179
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   633   e-178
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   630   e-177
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   629   e-177
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   627   e-177
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   625   e-176
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   624   e-175
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   622   e-175
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ...   615   e-173
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   615   e-173
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   613   e-172
ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB ...   612   e-172
ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-...   607   e-170
ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-...   606   e-170
gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium r...   605   e-170

>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  659 bits (1700), Expect = 0.0
 Identities = 362/581 (62%), Positives = 419/581 (72%), Gaps = 11/581 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQH-----HNIHLKTKEPICFRGYCVSSSTTS-----LI 1788
            MACLLPQF C  DTLS+H++  QH     +N  LK ++ +CFR  C+ S+TT+     ++
Sbjct: 1    MACLLPQFKCSPDTLSIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTTVV 60

Query: 1787 DVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXX 1608
            D EKLR+PS++ H  SV A R LTY GA+ PP K  F ATLATE  +TG           
Sbjct: 61   DDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAAAVE 120

Query: 1607 XXXXXXXXXXXXKGAAVMPTTNRLKILDN-PESFTSKGDLLLIESAKFTETEHVDTLGHF 1431
                        K AA+M +TN     D  P    S+ D    E+A+  E E VD + H 
Sbjct: 121  AVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDMVHHS 180

Query: 1430 ATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXX 1251
               E +P E         D++  D  D EL+LL+MQLS+SI  RSG              
Sbjct: 181  LGAESRPKE---------DSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAAE 231

Query: 1250 XXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXX 1071
                     K GSS RKKR+++Q+VDYSDPLRYLRGTTST++LLT ++ELE S GIQ   
Sbjct: 232  KVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDLL 291

Query: 1070 XXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAK 891
                      ER G QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVISIAK
Sbjct: 292  KLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIAK 351

Query: 890  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 711
            NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 352  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 411

Query: 710  PFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIG 531
            PFHMVEATYRV+EARKQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK PRSLDQKIG
Sbjct: 412  PFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIG 471

Query: 530  NDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKT 351
             + NLKPSEV ADPDAET E++LMK+FMK+DL+KVLD L+PRE QVIR RFGL+DGRMKT
Sbjct: 472  INQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGRMKT 531

Query: 350  LQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            LQEIGEL+GVSRER+RQIESCAFRKLKNKKRTK+L+QYLIS
Sbjct: 532  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  656 bits (1693), Expect = 0.0
 Identities = 353/583 (60%), Positives = 423/583 (72%), Gaps = 14/583 (2%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRP--TQHH------NIHLKTKEPICFRGYCVSSSTTS---- 1794
            MACLLPQF C  DT+S+H+R    QHH      N H K+++ + F+  CV S+TT+    
Sbjct: 1    MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTT 60

Query: 1793 -LIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXX 1617
             L+DVEKLR+PS++ HS SVA+ R L+Y GA  PP K SF ATLA E+ +TG        
Sbjct: 61   TLVDVEKLRMPSLESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAA 120

Query: 1616 XXXXXXXXXXXXXXXKGAAVMPTTNRLKILDN-PESFTSKGDLLLIESAKFTETEHVDTL 1440
                           K AA+M         +N P  F+S+  +  +E A+ TET+ V  +
Sbjct: 121  AAEAVALAKEAVEVAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRI 180

Query: 1439 GHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXX 1260
             H    E +  EE     S KD++  D  D E +LL+MQL +SI  RSG           
Sbjct: 181  DHSVGLESRQEEEQSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRAR 240

Query: 1259 XXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQ 1080
                        K G S RK+RA++Q++DYSDPLRYLRGTTST++LLT ++ELELS GIQ
Sbjct: 241  AMEKASTNVLSVKSGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQ 300

Query: 1079 XXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVIS 900
                         ERCG QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVIS
Sbjct: 301  DLLKLEKLHEELAERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVIS 360

Query: 899  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 720
            IAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 361  IAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 420

Query: 719  IRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQ 540
            IRLPFHMVEATYRV+EA+KQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK P SLDQ
Sbjct: 421  IRLPFHMVEATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQ 480

Query: 539  KIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGR 360
            KIG + ++KPSE+ ADPDAETAE++L+KQFMK+DL+KVLD L+PRE QVIR RFG++DGR
Sbjct: 481  KIGMNQDMKPSEIIADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGR 540

Query: 359  MKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLI 231
            MKTLQEIGEL+GVSRER+RQIESCAFRKLKNK+RTK+L+QY+I
Sbjct: 541  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  649 bits (1673), Expect = 0.0
 Identities = 348/578 (60%), Positives = 411/578 (71%), Gaps = 7/578 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHLKTKEPICFRGYCV-------SSSTTSLIDVE 1779
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S++TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSTATTAVLDVE 58

Query: 1778 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1599
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1598 XXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTE 1419
                     K AA+M   +     +     +S  D L  +   FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1418 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1239
             +  E++   +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEKAAT 238

Query: 1238 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 1059
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEV 298

Query: 1058 XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 879
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  CKDKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIRLVISIAKNYQG 358

Query: 878  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 699
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 698  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 519
            VEATYRVKEARKQLYS+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 518  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEI 339
            LKPSEV ADP+A++AED+L+KQFMK+DL+KVLD LSPRE QVIR RFG++DGRMKTLQEI
Sbjct: 479  LKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTLQEI 538

Query: 338  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 225
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 539  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 576


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  642 bits (1655), Expect = 0.0
 Identities = 345/578 (59%), Positives = 410/578 (70%), Gaps = 7/578 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHLKTKEPICFRGYCV-------SSSTTSLIDVE 1779
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S +TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVE 58

Query: 1778 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1599
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1598 XXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTE 1419
                     K AA+M   +     +     +S  D L  +   FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1418 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1239
             +  E+++  +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAAT 238

Query: 1238 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 1059
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEG 298

Query: 1058 XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 879
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  C DKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQG 358

Query: 878  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 699
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 698  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 519
            VEATYRVKEARKQL+S+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 518  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEI 339
            LKPSEV ADP+A++AED+L+KQFMK+DL+KVLD LSPRE QVIR RFG++DGR+KTLQEI
Sbjct: 479  LKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEI 538

Query: 338  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 225
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 539  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 576


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  637 bits (1643), Expect = e-179
 Identities = 352/579 (60%), Positives = 408/579 (70%), Gaps = 9/579 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHLKTKEPICFRGYC--------VSSSTTSLIDV 1782
            M+CLLPQF C  DT S H  P  H  I  K +E I FR  C        +S+STT+++D+
Sbjct: 1    MSCLLPQFKCPPDTFSTH--PKLH--ILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDI 56

Query: 1781 EKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXX 1602
            EKLRLPS++ HS SVAA R  TY G + PP + +F ATLA ET LT              
Sbjct: 57   EKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAV 116

Query: 1601 XXXXXXXXXXKGAA-VMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFAT 1425
                      K AA ++   N  K    P SF S  D       +FTETE +  LG    
Sbjct: 117  ALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVG 176

Query: 1424 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1245
             E    + N      +D++D +    ELELL  + S+SI  RS                 
Sbjct: 177  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 1244 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 1065
                   + GS+ R+KR S+QEVDYSDPLRYLRGTTST++LLT ++ELELS GIQ     
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 1064 XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 885
                    ER G +PT AQWAAAAG+D+KTLR+  N+GIRCKDKMIKSNIRLVISIAKNY
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 884  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 705
            QGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 704  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 525
            HMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLLTPK PRSLDQKIG +
Sbjct: 417  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476

Query: 524  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQ 345
             NLKPSEV ADPDAETAE++L+KQFM+EDL+KVL+ L+PRE QVIR R+GL+DGR KTLQ
Sbjct: 477  QNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQ 536

Query: 344  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            EIGEL+GVSRER+RQIESCAFRKLKNK+RTKHL+QYL+S
Sbjct: 537  EIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  635 bits (1638), Expect = e-179
 Identities = 346/579 (59%), Positives = 409/579 (70%), Gaps = 9/579 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHL----KTKEPICFRGYCVSSST-----TSLID 1785
            M+CLLPQF C  DT S+H+R     N +     K++EP+CFR  C+ S+T     T+++D
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60

Query: 1784 VEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXX 1605
            +EKLRLPS + H  S+ A    TY G++ PP K +FG+TLATET +TG            
Sbjct: 61   LEKLRLPSFEAHPDSLVANSPWTYVGSIGPP-KETFGSTLATETLITGDDAVIAAAAAEA 119

Query: 1604 XXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFAT 1425
                       K AA++  +      ++     S  D +     +FTET+    +G   T
Sbjct: 120  VALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIAD-VSSRWPQFTETDRARIIGDSVT 178

Query: 1424 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1245
             E    EE+      K+++  +    ELELL+ QLSE I  RS                 
Sbjct: 179  AETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAAEKA 238

Query: 1244 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 1065
                   K GS+ +KKR  +QEVDYSDPLRYLRGTTST+KLLT ++ELELS GIQ     
Sbjct: 239  AANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDLLKL 298

Query: 1064 XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 885
                    ERCG QPT  QWAAAAG+D+KTLR  LN+GI CKD+MIKSNIRLVISIAKNY
Sbjct: 299  ERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIAKNY 358

Query: 884  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 705
            QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 359  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 418

Query: 704  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 525
            HMVEATYRVKEARKQLYS+NGR P+DEE+AEATGLSMKRL AVLLTPK PRSLDQKIG +
Sbjct: 419  HMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQKIGIN 478

Query: 524  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQ 345
            ++LKPSE+ ADPDAETAED+LMKQFMK+DL+KVLD LSPRE QVIR RFGL+DGR+KTLQ
Sbjct: 479  MDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRIKTLQ 538

Query: 344  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            EIGE++GVSRER+RQIES AFRKLK KKRTK L+QYL++
Sbjct: 539  EIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577


>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  633 bits (1632), Expect = e-178
 Identities = 347/589 (58%), Positives = 410/589 (69%), Gaps = 12/589 (2%)
 Frame = -3

Query: 1958 TVIYTTHMACLLPQFMCLSDTLSLHYRPT---QHHNIH-LKTKEPICFRGYCVSSST--- 1800
            T  +  +M+CLLPQF C  DT S+H+R     QHH+ H  K+KEPICFR +CV S+T   
Sbjct: 17   TSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPS 76

Query: 1799 -----TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXX 1635
                 T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATET  +   
Sbjct: 77   TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136

Query: 1634 XXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETE 1455
                                   A ++   N  K    P + +S  D      A+ TE E
Sbjct: 137  VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKP-AISSSADTNTSMWAQLTERE 195

Query: 1454 HVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXX 1275
                +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS       
Sbjct: 196  RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERK 255

Query: 1274 XXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELEL 1095
                             K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++L
Sbjct: 256  ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315

Query: 1094 SAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNI 915
            SAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNI
Sbjct: 316  SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375

Query: 914  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 735
            RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 376  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435

Query: 734  DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPP 555
            DQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLL+PK P
Sbjct: 436  DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAP 495

Query: 554  RSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFG 375
            RSLDQKIG + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFG
Sbjct: 496  RSLDQKIGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 555

Query: 374  LDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            L+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 556  LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  630 bits (1626), Expect = e-177
 Identities = 346/589 (58%), Positives = 408/589 (69%), Gaps = 12/589 (2%)
 Frame = -3

Query: 1958 TVIYTTHMACLLPQFMCLSDTLSLHYRPT---QHHNIH-LKTKEPICFRGYCVSSST--- 1800
            T  +  +M+CLLPQF C  DT S+H+R     QHH+ H  K+KEPICFR +CV S+T   
Sbjct: 17   TSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPS 76

Query: 1799 -----TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXX 1635
                 T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATET  +   
Sbjct: 77   TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136

Query: 1634 XXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETE 1455
                                   A ++   N  K    P + +   D      A+ TE E
Sbjct: 137  VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKP-AISLSADTNTSMWAQLTERE 195

Query: 1454 HVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXX 1275
                +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS       
Sbjct: 196  RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERK 255

Query: 1274 XXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELEL 1095
                             K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++L
Sbjct: 256  ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315

Query: 1094 SAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNI 915
            SAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNI
Sbjct: 316  SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375

Query: 914  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 735
            RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 376  RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435

Query: 734  DQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPP 555
            DQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+AEATGLSMKRL AVLLTPK P
Sbjct: 436  DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAP 495

Query: 554  RSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFG 375
            RSLDQK G + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFG
Sbjct: 496  RSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFG 555

Query: 374  LDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            L+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 556  LEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  629 bits (1623), Expect = e-177
 Identities = 338/549 (61%), Positives = 402/549 (73%), Gaps = 8/549 (1%)
 Frame = -3

Query: 1850 KTKEPICFRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1695
            K+++P+CFR   +        S+ TT+++DVEKLRLPS++ +S S+AA R  TYTGA  P
Sbjct: 95   KSRDPLCFRAQSILSTASRSTSTGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGP 154

Query: 1694 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPE 1515
            P++ +FGATLATE  LT                        K  A++ +TN     ++  
Sbjct: 155  PIEANFGATLATENLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSS 214

Query: 1514 SFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELEL 1335
              + K + L  + AK  ET+    LG    +E    E +    +IK++ED +  + E EL
Sbjct: 215  PVSPKTNALHFKWAKHMETKQPSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFEL 274

Query: 1334 LRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLR 1155
            L+ QLSE ITARS                        K GS+ RKKRAS+Q+VD+SDPLR
Sbjct: 275  LQEQLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLR 334

Query: 1154 YLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKT 975
            YLR TT T++LLT ++E+ELS GIQ             +RCG QPTIAQWAAAAG+D+KT
Sbjct: 335  YLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKT 394

Query: 974  LRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 795
            LRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 395  LRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKG 454

Query: 794  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIA 615
            FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGR PNDEE+A
Sbjct: 455  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVA 514

Query: 614  EATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDL 435
            EATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV ADPDAETAEDMLMK+FMK+DL
Sbjct: 515  EATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDL 574

Query: 434  DKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRT 255
            +KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRT
Sbjct: 575  EKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 634

Query: 254  KHLEQYLIS 228
            KHL+QY++S
Sbjct: 635  KHLQQYVVS 643


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  627 bits (1618), Expect = e-177
 Identities = 347/596 (58%), Positives = 412/596 (69%), Gaps = 16/596 (2%)
 Frame = -3

Query: 1967 IEETVIYTT----HMACLLPQFMCLSDTLSLHYRPT---QHHNIH-LKTKEPICFRGYCV 1812
            ++ET I T+    +M+CLLPQF C  DT S+H+R     QHH+ H  K+KEPICFR +CV
Sbjct: 10   VKETQISTSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCV 69

Query: 1811 SSST--------TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATE 1656
             S+T        T+++DVEKLRLPS++ HS +VAA R  TY GA+ P  + + G +LATE
Sbjct: 70   LSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATE 129

Query: 1655 TFLTGXXXXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIES 1476
            T  +                          A ++   N  K    P + +   D      
Sbjct: 130  TLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKP-AISLSADTSTSMW 188

Query: 1475 AKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARS 1296
            A+ TE E    +G     E  P EE      +  + D +    EL+LL  Q+S+SI  RS
Sbjct: 189  AQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248

Query: 1295 GXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLT 1116
                                    K GS+ R+KR S+QEVDYSDPLRYLR TTS+++LLT
Sbjct: 249  RRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308

Query: 1115 YSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKD 936
             ++E++LSAGIQ             ERCG  PT AQWAAAAG+D++ LR+ LN+GI CKD
Sbjct: 309  ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368

Query: 935  KMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 756
            KMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369  KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428

Query: 755  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAV 576
            AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+A+ATGLSMKRL AV
Sbjct: 429  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAV 488

Query: 575  LLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQ 396
            LL PK PRSLDQK G + NLKPSEV ADP+AETAED+L+K+FMKEDL+KVLD L+PRE Q
Sbjct: 489  LLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 548

Query: 395  VIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            V+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 549  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  625 bits (1611), Expect = e-176
 Identities = 337/571 (59%), Positives = 409/571 (71%), Gaps = 1/571 (0%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHH-NIHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1761
            MACL+PQF C S +   H+RP  HH +++ K ++ +CFR  CVS+ T ++ID++  R+PS
Sbjct: 1    MACLVPQFKCPSISPDAHFRPLSHHPSLNSKARDSVCFRSPCVSTLTAAVIDIQ--RIPS 58

Query: 1760 IDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXX 1581
            ++ HSTS+ A R LTY GA+ PP+KTS  ATLATET LTG                    
Sbjct: 59   LEAHSTSLDATRPLTYVGAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALARAAV 118

Query: 1580 XXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEE 1401
               K AA +   +    L+  E F+S+ D   +E  + TE E + T  +   T+ +P E 
Sbjct: 119  EVAKDAAQIIGNDPSVKLEKSEDFSSEADAFRLERVRLTEMELIRTTNNSTPTDTEPHEA 178

Query: 1400 NVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXK 1221
              P       + S+    ELE  +MQ  ESI  RSG                       K
Sbjct: 179  KDPSQG---TDVSNLTHKELESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVSVIPVK 235

Query: 1220 PGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXX 1041
             GS+ +KKR++ QEVDYSDPLRYLRGTTST+KLLT ++ELELS  IQ             
Sbjct: 236  SGSTSKKKRSTFQEVDYSDPLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERLQQELA 295

Query: 1040 ERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQ 861
            ER G QPT AQWAAAAG+D++TLRK LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 296  ERHGGQPTFAQWAAAAGVDQRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGAGMNLQ 355

Query: 860  DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 681
            DLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVR+SLS+QSRTIRLPFHMVEATYR
Sbjct: 356  DLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYR 415

Query: 680  VKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEV 501
            V+EA+KQLYS+NGR P+ +E+AEATGLSMKRL AV+LTPK PRSLDQKIG + +LKPSEV
Sbjct: 416  VREAKKQLYSENGRYPDYQEVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEV 475

Query: 500  TADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGV 321
             ADP+AET+E++L+KQF K+DL+KVLD L+PRE QV+R RFGL+DG  KTLQEIGEL+GV
Sbjct: 476  IADPEAETSEEILIKQFRKQDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGV 535

Query: 320  SRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            SRER+RQIES AFRKLKNKKRT+HL+QY+IS
Sbjct: 536  SRERIRQIESSAFRKLKNKKRTRHLQQYVIS 566


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  624 bits (1609), Expect = e-175
 Identities = 353/623 (56%), Positives = 408/623 (65%), Gaps = 52/623 (8%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHL------------------------------- 1851
            M+CLLPQF C  DT S+ +R   HH+ H                                
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRT--HHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLI 58

Query: 1850 -----KTKEPICFRGYCVSSST--------TSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1710
                 K KE ICFR  CV S+T        T+++DVEKLRLPS + H  SVA  R  TY 
Sbjct: 59   FVVLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYI 118

Query: 1709 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKI 1530
            GA  PP + S GATLAT+  LT                        K AA+M        
Sbjct: 119  GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178

Query: 1529 LDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERD 1350
             +     +   D    + A FTE E    +G   T E +  E++   +S  ++++ +  +
Sbjct: 179  TEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTN 238

Query: 1349 NELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDY 1170
             ELE L  QLS SI  RS                        K GS+ RK+R ++Q+VDY
Sbjct: 239  EELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDY 298

Query: 1169 SDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAG 990
            SDPLRYLRGTTST++LLT ++ELELS GIQ             ERCG QPT AQWAAAAG
Sbjct: 299  SDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAG 358

Query: 989  LDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 810
            +D+KTLR  LN+G+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
Sbjct: 359  VDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 418

Query: 809  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPN 630
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR P+
Sbjct: 419  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD 478

Query: 629  DEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPS--------EVTADPDAETA 474
            +EE+AEATGLSMKRL AVLLTPK PRSLDQKIG + NLKPS        EV ADP+AETA
Sbjct: 479  NEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETA 538

Query: 473  EDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIE 294
            EDML+KQFM++DL+KVLD LS RE QVIR RFG++DGRMKTLQEIGEL+GVSRER+RQIE
Sbjct: 539  EDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIE 598

Query: 293  SCAFRKLKNKKRTKHLEQYLISY 225
            SCAFRKLKNKKRTKHL+QYL+SY
Sbjct: 599  SCAFRKLKNKKRTKHLQQYLLSY 621


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  622 bits (1605), Expect = e-175
 Identities = 344/579 (59%), Positives = 406/579 (70%), Gaps = 9/579 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHL----KTKEPICFRGYCVSSST-----TSLID 1785
            M+CLLPQF C  DT S+H+R    H  ++    K++EPI +R  C+ S+T     T+++D
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 1784 VEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXX 1605
            +EKLRLPS +  S S+A     TY          +FG+TLATET +T             
Sbjct: 62   LEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEA 112

Query: 1604 XXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFAT 1425
                       K AA++         +     TS   +      +FTETE    +G    
Sbjct: 113  VALARAAVKVAKDAALL--VKNFPSAETESKLTSPSTIDASRWPQFTETERARIIGDSVA 170

Query: 1424 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1245
            TE  P EE+   SSIK+++  +    ELELL+ QLSE I  RS                 
Sbjct: 171  TETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKA 230

Query: 1244 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 1065
                   KPGS+ +KKR S+QEVDYSDPLRYLRGTTST++LLT S+ELELSA IQ     
Sbjct: 231  ASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKL 290

Query: 1064 XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 885
                    ER G QPT AQWAAAAG+D++TLRK +NHG  CKDKMIKSNIRLVISIAKNY
Sbjct: 291  ERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNY 350

Query: 884  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 705
            QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 351  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 410

Query: 704  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 525
            HMVEATYRVKEARKQLYS+NGR P+DEE+AEA GLSMKRL AVLLTPK PRSLDQKIG +
Sbjct: 411  HMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMN 470

Query: 524  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQ 345
            ++LKPSEV ADP+AETAE++LMKQFMK+DL+KVL+ L+PRE QV+R RFGL+DGRMKTLQ
Sbjct: 471  MDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQ 530

Query: 344  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            EIGE++GVSRER+RQIES AFRKLKNKKRTK L+QYL++
Sbjct: 531  EIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
            bretschneideri]
          Length = 643

 Score =  615 bits (1586), Expect = e-173
 Identities = 331/558 (59%), Positives = 404/558 (72%), Gaps = 10/558 (1%)
 Frame = -3

Query: 1871 QHHNIHLKTKEPICFRG--------YCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLT 1716
            +H +   KT++P+CFR         +  S++TT+++D+E+LRLPS++ +S S+A+ R  T
Sbjct: 86   KHSSFQAKTRDPLCFRAQYILSTTSHSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWT 145

Query: 1715 YTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKGAAVM--PTTN 1542
            YTGA+ P  + +FGATLATET LT                        K  A++   +TN
Sbjct: 146  YTGAIGPLTEANFGATLATETLLTSEEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTN 205

Query: 1541 RLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDS 1362
                 ++    + +   L    A+  ETE V  +G     E    E++   S+IK+ E+ 
Sbjct: 206  HSAKPESSSPVSPETKALHFNWAQHMETEQVSRVGASMGAETAFVEDHFIQSAIKELEEV 265

Query: 1361 DERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQ 1182
            ++   E ELL+ QLS+ ITA+S                        K GS+ RKKR+S+Q
Sbjct: 266  EQTYEEFELLQEQLSKGITAKSSRQTERKARRAKAAEKAAASVVSVKSGSATRKKRSSVQ 325

Query: 1181 EVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWA 1002
            E+D+SDPLRYLR TT T++LLT ++E+E S GIQ             +RCG QPTIAQWA
Sbjct: 326  EIDHSDPLRYLRSTTHTSRLLTANEEIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQWA 385

Query: 1001 AAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 822
            AAAG+D+KTLRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG
Sbjct: 386  AAAGVDQKTLRKRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 445

Query: 821  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNG 642
            AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NG
Sbjct: 446  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLNG 505

Query: 641  RLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDML 462
            R PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV +DPDAETAED+L
Sbjct: 506  RHPNDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEDLL 565

Query: 461  MKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAF 282
            MK+FMK+DL+KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAF
Sbjct: 566  MKKFMKQDLEKVLDSLNTREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 625

Query: 281  RKLKNKKRTKHLEQYLIS 228
            RKLKNKKRTKHL+QY++S
Sbjct: 626  RKLKNKKRTKHLQQYVVS 643


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  615 bits (1585), Expect = e-173
 Identities = 338/579 (58%), Positives = 402/579 (69%), Gaps = 10/579 (1%)
 Frame = -3

Query: 1934 ACLLPQFMCLSDTLSLHYRPTQHHNIHLKTKEPICFRGYCV----------SSSTTSLID 1785
            +CLLPQF C  DT S+ +R     N     +E   FR  C+          S++T  ++D
Sbjct: 15   SCLLPQFKCQPDTFSIQFRTHAQKN-----RETTYFRAQCLLSATSPSTLSSAATAVVLD 69

Query: 1784 VEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXX 1605
            +EKLRLPS++  + S  + R  TYTGA+ PP + + GATLATET LT             
Sbjct: 70   MEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEAVIAAAASEA 129

Query: 1604 XXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFAT 1425
                       K AA+M        +DN    +S+    L + A+  E EH + L     
Sbjct: 130  VTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEHSNILTELME 189

Query: 1424 TEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXX 1245
             E    E NV   S   +ED +    EL+LL++QL +SI  RS                 
Sbjct: 190  PEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKA 249

Query: 1244 XXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXX 1065
                   K GS  +KKRA++QEVDYSDPLRYLRGTTS+++LLT ++E ELS GIQ     
Sbjct: 250  AANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELSEGIQDLLKL 309

Query: 1064 XXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNY 885
                    ERCG +P  AQWAAAAG+D+KTLRK LN+G  CKDKMIKSNIRLVISIAKNY
Sbjct: 310  ERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNY 369

Query: 884  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 705
            QGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 370  QGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 429

Query: 704  HMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGND 525
            HMVEATYRVKEARKQLYS+NGR P++EE+AEATGLSMKRL AVL+TPK PRSLDQKIG +
Sbjct: 430  HMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGIN 489

Query: 524  LNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQ 345
             NLKPSEV ADP+AET+ED+L+KQFM++DL+KVLD L+PRE QV+R RFGL+DGRMKTLQ
Sbjct: 490  QNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQ 549

Query: 344  EIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            EIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QY+++
Sbjct: 550  EIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  613 bits (1581), Expect = e-172
 Identities = 339/582 (58%), Positives = 394/582 (67%), Gaps = 12/582 (2%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHH----NIHLKTKEPICFRGYCVSSST--------TS 1794
            M+CLLPQF C  DT S  +    H     N HL     I     CV S+T        T 
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60

Query: 1793 LIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXX 1614
            ++ VEKLR PS+D +S SV + R  TYTGA  PP++ +F ATLATET LT          
Sbjct: 61   VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAAA 120

Query: 1613 XXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGH 1434
                             A +       +L  P +      L+  E+      +    +  
Sbjct: 121  AEAVTL---------AKAAVKVAKDAALLVRPSTRAESISLVSSEARNIKTAQAASRVRD 171

Query: 1433 FATTEFQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXX 1254
                E    E++ P  + K++ D    + EL +L+ QLS+SI  RS              
Sbjct: 172  SLRAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAA 231

Query: 1253 XXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXX 1074
                      K GS+ RKKRAS+Q+VD+SDPLRYLR TTST++LLT ++E+ELS GIQ  
Sbjct: 232  EKAAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDL 291

Query: 1073 XXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIA 894
                       ERCG  PT AQWAAAAG+D+KTLR+ +N+GI CKDKMIKSN+RLVISIA
Sbjct: 292  LKLEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIA 351

Query: 893  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 714
            KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 352  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 411

Query: 713  LPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKI 534
            LPFHMVEATYRVKEARKQLYS+NGR PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKI
Sbjct: 412  LPFHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKI 471

Query: 533  GNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMK 354
            G + NLKPSE+ ADPDAET ED+L +QFMK+DLDKVLD L+ RE QVIR RFG+DDGRMK
Sbjct: 472  GINQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMK 531

Query: 353  TLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            TLQEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QYLIS
Sbjct: 532  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Malus
            domestica]
          Length = 638

 Score =  612 bits (1577), Expect = e-172
 Identities = 331/549 (60%), Positives = 401/549 (73%), Gaps = 8/549 (1%)
 Frame = -3

Query: 1850 KTKEPICFRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1695
            KT++P+CFR   +        S++TT+++D+EKLRLPS++ +S S+A+ R  TYTGA+ P
Sbjct: 91   KTRDPLCFRAQYILSTTPRSTSTATTTVLDMEKLRLPSLEFNSDSLASSRPWTYTGAIDP 150

Query: 1694 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKGAAVMPTTNRLKILDNPE 1515
            P + +FG+TLATET LT                        K  A++ +T      +   
Sbjct: 151  PTEANFGSTLATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVAMLVSTIHSAKPEISS 210

Query: 1514 SFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENVPGSSIKDAEDSDERDNELEL 1335
              + + + L    A+  ETE V  +G     E    E++    + K++E+ +  + E EL
Sbjct: 211  PVSPETNALHFNWAQHIETEQV-RVGASMGAETAFLEDHFIQYAEKESEEVERTNEEFEL 269

Query: 1334 LRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLR 1155
            L+ QLS+ ITA+S                        K GS+ RKKR+S+QE+D+SDPLR
Sbjct: 270  LQEQLSKGITAKSSRQTERKARRSKAAEKAAASVVSVKSGSTTRKKRSSVQEIDHSDPLR 329

Query: 1154 YLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKT 975
            YLR TT T++LLT ++E+ELSAGIQ             +RCG QPTIAQWAAAAG+D+KT
Sbjct: 330  YLRSTTHTSRLLTANEEIELSAGIQELLKLEKLQEELTQRCGRQPTIAQWAAAAGVDQKT 389

Query: 974  LRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 795
            LRK +N GI CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQ+GCRGLVRGAEKFDASKG
Sbjct: 390  LRKRVNCGILCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQQGCRGLVRGAEKFDASKG 449

Query: 794  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIA 615
            FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLYS NGR PNDEE+A
Sbjct: 450  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSLNGRHPNDEEVA 509

Query: 614  EATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDL 435
            EATGLSMKRL AVLLTPK PRSLDQKIG +LN KPSEV +DPDAETAED+LMK+FMK+DL
Sbjct: 510  EATGLSMKRLSAVLLTPKAPRSLDQKIGINLNFKPSEVISDPDAETAEDLLMKKFMKQDL 569

Query: 434  DKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRT 255
            +KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRT
Sbjct: 570  EKVLDSLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 629

Query: 254  KHLEQYLIS 228
            KHL+QY +S
Sbjct: 630  KHLQQYAVS 638


>ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata
            subsp. malaccensis]
          Length = 567

 Score =  607 bits (1564), Expect = e-170
 Identities = 338/573 (58%), Positives = 402/573 (70%), Gaps = 3/573 (0%)
 Frame = -3

Query: 1937 MACLLPQFMC-LSDTLSLHYRPTQHHNIHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1761
            MACL+PQF    SD+L+    P+    +H + +E +CFR  CV S TT++ID E++  P 
Sbjct: 1    MACLVPQFKPPSSDSLARPSLPS----LHPRAREFVCFRSRCVLSPTTAVIDFEQI--PK 54

Query: 1760 IDDHSTS--VAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXX 1587
            ++ HSTS    A+R LTY+G++ PP+KTS  ATLA+ET L                    
Sbjct: 55   LEAHSTSSSTCAIRPLTYSGSVGPPIKTSIEATLASETLLQCDEAVIAAAAAEAVALARA 114

Query: 1586 XXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPG 1407
                 K AA M   N    ++  E   S+ D+  +E    TETE      H A TE  P 
Sbjct: 115  ALELAKDAAQMIGKNLSAEVEKLEETPSEADIKWLERVSLTETEWAGFTNHPAATETIPF 174

Query: 1406 EENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXX 1227
            E NV        + S    +E E   MQ  E+I  RSG                      
Sbjct: 175  EYNVSLDQYASTDISSSTFDEPEFQGMQHIENIAVRSGRQIERRARRARAADKATAGVIS 234

Query: 1226 XKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXX 1047
             K GSSG+KKR++ QE+DYSDPLRYLRGTTST+KLLT ++E+ELS GIQ           
Sbjct: 235  LKSGSSGKKKRSAFQEIDYSDPLRYLRGTTSTSKLLTAAEEIELSEGIQSLLKLERLQQD 294

Query: 1046 XXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMN 867
              ER GCQPT AQWAAAAG+D+KTLRK +NHG  CKDKMIKSNIRLVISIAKNYQGAG+N
Sbjct: 295  LAERNGCQPTFAQWAAAAGIDQKTLRKRINHGTYCKDKMIKSNIRLVISIAKNYQGAGIN 354

Query: 866  LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 687
            LQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLS+QSRTIRLPFHMVEAT
Sbjct: 355  LQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSEQSRTIRLPFHMVEAT 414

Query: 686  YRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPS 507
            YRV+EA+K+LYS+NGR P++EE+AEA GLSMKRL AV+LTPK PRSLDQKIG + +LK S
Sbjct: 415  YRVREAKKKLYSENGRHPDNEEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGINQSLKAS 474

Query: 506  EVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELI 327
            EV ADP A+T+ED+LMKQFM+EDL+KVLD L+ RE QV+R RFGLDDGRMKTLQEIGEL+
Sbjct: 475  EVIADPAAKTSEDILMKQFMREDLNKVLDTLNLREKQVVRWRFGLDDGRMKTLQEIGELM 534

Query: 326  GVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            GVSRER+RQIESCAFRKLK+KKRTK+L QY+IS
Sbjct: 535  GVSRERIRQIESCAFRKLKSKKRTKNLRQYIIS 567


>ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 566

 Score =  606 bits (1562), Expect = e-170
 Identities = 328/571 (57%), Positives = 403/571 (70%), Gaps = 1/571 (0%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQH-HNIHLKTKEPICFRGYCVSSSTTSLIDVEKLRLPS 1761
            MACL+PQF C S +   H+R   H  +++ K ++ +CFR  CVS+ T ++ID++  R+PS
Sbjct: 1    MACLVPQFKCPSISPEAHFRSVSHLPSLNSKARDSVCFRSQCVSTQTAAVIDIQ--RIPS 58

Query: 1760 IDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXX 1581
            ++  S S+   R LTY G++ PP+KT   ATLATET LTG                    
Sbjct: 59   LEARSNSLDDTRPLTYVGSVGPPMKTGIEATLATETLLTGEEAVVAAAAAEAVALARAAV 118

Query: 1580 XXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEE 1401
               K AA +   +    L+  E F+S+ D   +E  +  E   + T  H   T+ +P E 
Sbjct: 119  EVAKDAAQIIRNDPSVKLEKSEDFSSEADAFWLERVRHNEMGLIRTTHHSTPTDTEPHEA 178

Query: 1400 NVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXK 1221
              P    +D + S+  +NEL+  +MQ  ESI  RSG                       K
Sbjct: 179  KDPS---QDIDVSNLTNNELQSQQMQYPESIAVRSGRQTERKARRARAEEKAAVSVIPIK 235

Query: 1220 PGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXX 1041
             GSS +KKR++ QE+DYSDPL YLRGTTST+KLLT ++ELELS GIQ             
Sbjct: 236  SGSSSKKKRSAFQEIDYSDPLHYLRGTTSTSKLLTAAEELELSKGIQDLLKLEKLREELA 295

Query: 1040 ERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQ 861
            ER G QPT AQWAAAAG+D++TLRK LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQ
Sbjct: 296  ERHGGQPTFAQWAAAAGVDQRTLRKRLNYGGFCKDKMIKSNIRLVISIAKNYQGAGMNLQ 355

Query: 860  DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 681
            DLVQEGCRGLV+GAE+FDA KGFKFSTYAHWWIKQAVR+SLS+QSRTIRLP HMVEATYR
Sbjct: 356  DLVQEGCRGLVKGAERFDALKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPIHMVEATYR 415

Query: 680  VKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLNLKPSEV 501
            V+EA+KQLYS+NGR P+ EE+AEATGLSMKRL AV+LTPK PRSLDQKIG + +LKPSEV
Sbjct: 416  VREAKKQLYSENGRHPDYEEVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEV 475

Query: 500  TADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEIGELIGV 321
             ADP AET+E++L+KQFMK+DL+KVLD L+PRE QV+R RFGL+DG  KTLQEIGEL+GV
Sbjct: 476  IADPKAETSEEILIKQFMKQDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGV 535

Query: 320  SRERVRQIESCAFRKLKNKKRTKHLEQYLIS 228
            SRER+RQIES AFRKLK+KKRT+HL+QY+IS
Sbjct: 536  SRERIRQIESSAFRKLKSKKRTRHLQQYVIS 566


>gb|KJB46073.1| hypothetical protein B456_007G347300 [Gossypium raimondii]
          Length = 560

 Score =  605 bits (1560), Expect = e-170
 Identities = 333/578 (57%), Positives = 393/578 (67%), Gaps = 7/578 (1%)
 Frame = -3

Query: 1937 MACLLPQFMCLSDTLSLHYRPTQHHNIHLKTKEPICFRGYCV-------SSSTTSLIDVE 1779
            M+CLLPQF C  DT S+ +R   HH+ H K KE ICFR  CV       S +TT+++DVE
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRA--HHSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVE 58

Query: 1778 KLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXX 1599
            KLRLPS + HS SV   R  TYTGA  PP + SFGATLATE  LT               
Sbjct: 59   KLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVA 118

Query: 1598 XXXXXXXXXKGAAVMPTTNRLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTE 1419
                     K AA+M   +     +     +S  D L  +   FTE E    +G + + E
Sbjct: 119  LARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDE 178

Query: 1418 FQPGEENVPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXX 1239
             +  E+++  +S K++++ +  + EL+LL  QLS SI  RS                   
Sbjct: 179  LELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAAT 238

Query: 1238 XXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXX 1059
                 K GS+ RK+R ++Q++DYSDPLRYLRGTT+T+KLLT ++ELELS GIQ       
Sbjct: 239  NVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEG 298

Query: 1058 XXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQG 879
                  ERCG  PT AQWAAAA +DRKTLR+ LN+G  C DKMIKSNIRLVISIAKNYQG
Sbjct: 299  LHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQG 358

Query: 878  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 699
            AGMNLQDLVQEGCRGL+RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM
Sbjct: 359  AGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 418

Query: 698  VEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLMAVLLTPKPPRSLDQKIGNDLN 519
            VEATYRVKEARKQL+S+NGR P++ E+AEATGLSMKRL AVLL PK PRSLDQKIG + N
Sbjct: 419  VEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQN 478

Query: 518  LKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPREGQVIRSRFGLDDGRMKTLQEI 339
            LKPS                  FMK+DL+KVLD LSPRE QVIR RFG++DGR+KTLQEI
Sbjct: 479  LKPS------------------FMKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEI 520

Query: 338  GELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLISY 225
            GE +GVSRER+RQIE CAFRKLKNK+RTKHL+QYL+SY
Sbjct: 521  GESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLSY 558