BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00000885
         (2008 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-...   716   0.0  
ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-...   696   0.0  
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   694   0.0  
ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA ...   689   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   684   0.0  
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   683   0.0  
ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA ...   683   0.0  
gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   682   0.0  
ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA ...   679   0.0  
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   677   0.0  
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   673   0.0  
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   671   0.0  
ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA ...   668   0.0  
ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA ...   665   0.0  
ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA ...   665   0.0  
gb|AKC88633.1| sigma factor [Melianthus villosus]                     665   0.0  
gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sin...   663   0.0  
ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-...   662   0.0  
gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   657   0.0  
ref|XP_006878659.1| PREDICTED: RNA polymerase sigma factor sigA ...   654   0.0  

>ref|XP_010266387.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 506

 Score =  716 bits (1847), Expect = 0.0
 Identities = 382/509 (75%), Positives = 428/509 (84%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL S+FY SD+TD+L SV+D G+A + ATS+ KNVI A+KS+NFG 
Sbjct: 1    MATAAVIGLSAGKRLLNSTFYYSDVTDRLLSVYDHGLAQYQATSA-KNVIIARKSSNFGD 59

Query: 1546 GFPSNRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLE 1370
             FPSN++ QS+RA+KE V+T S PS A     +S LLE++  D + S++ L+LLQK +LE
Sbjct: 60   SFPSNQHIQSIRALKEHVNTLSTPSTADVWLQSSGLLEEENTDLDYSVDALLLLQKFLLE 119

Query: 1369 KQWNLSFDQTGLLDAAGGGQ--KKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            KQWNLSF+QT + D A G +  KKI VTRSG+SARQRRTST R       S++  +KRK 
Sbjct: 120  KQWNLSFEQT-ITDGAPGEETHKKIQVTRSGVSARQRRTSTRRTCLSPKHSIMQPTKRKQ 178

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            LGS VSPELL+ H  GYVKGVIS++LL+HAEV  LSKKIKAGLS           LGC+P
Sbjct: 179  LGSMVSPELLKSHY-GYVKGVISEELLTHAEVVQLSKKIKAGLSLEEHKLRLKERLGCDP 237

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQLASSLRI R EL++K+IECSLAR+KL MSNVRLVMSIAQKYD +GAEMADLVQGGL
Sbjct: 238  SDEQLASSLRISRAELQSKVIECSLAREKLTMSNVRLVMSIAQKYDNMGAEMADLVQGGL 297

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAKIR
Sbjct: 298  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLCLIRNAKIR 357

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            L +KG+TPSIDRIAE LNMS KKVRNATEAVNKVFSLDREAFPSLNGLP ETLHSYIADN
Sbjct: 358  LAEKGITPSIDRIAECLNMSEKKVRNATEAVNKVFSLDREAFPSLNGLPRETLHSYIADN 417

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
             LENNPWHGVDEWSLKDEVN L+S TL ERER+II LYYGLDKE  TWEDIS++IGLSRE
Sbjct: 418  RLENNPWHGVDEWSLKDEVNNLLSTTLEERERDIIRLYYGLDKECLTWEDISRRIGLSRE 477

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARK+RLDTMLVKH
Sbjct: 478  RVRQVGLVALEKLKHAARKKRLDTMLVKH 506


>ref|XP_010275189.1| PREDICTED: RNA polymerase sigma factor sigA-like [Nelumbo nucifera]
            gi|720061510|ref|XP_010275190.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Nelumbo nucifera]
            gi|720061513|ref|XP_010275191.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Nelumbo nucifera]
          Length = 516

 Score =  696 bits (1795), Expect = 0.0
 Identities = 363/507 (71%), Positives = 426/507 (84%), Gaps = 1/507 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGL+AGKRLL+S+FY SD+TD+L SV+D G+A +  T+ +K+V+ AKKS+NF  
Sbjct: 11   MATAAVIGLNAGKRLLSSTFYYSDVTDRLASVYDHGLAQYQ-TAPSKSVVIAKKSSNFDH 69

Query: 1546 GFPSNRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLEK 1367
             F SNR+ QS++A+KE ++T + S       TSD LE+  +D + SLE L+LLQKS+LEK
Sbjct: 70   DFASNRHNQSIKALKEHLNTFSTSTEDMWLQTSDHLEEGNSDLDYSLEALLLLQKSLLEK 129

Query: 1366 QWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHLG 1190
            QWNLSF+++    A     +KKI VTRSG+SARQRRT+T ++    ++SM+ +++R+HLG
Sbjct: 130  QWNLSFEKSMRKGAPKEETRKKIQVTRSGVSARQRRTNTRKKYLNTDSSMMQTTRRRHLG 189

Query: 1189 STVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPSD 1010
            S VS ELLQ  LKGYVKGVIS++LL+H+EV  LSKKIK G+S           LGCEPSD
Sbjct: 190  SMVSEELLQSRLKGYVKGVISEELLTHSEVVQLSKKIKVGISLEEHKMRLKERLGCEPSD 249

Query: 1009 EQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLIG 830
            EQLA+SLRI R EL+ KMIECSLAR+K+AMSNVRLVMSIA KYD +GAEMADLVQGGLIG
Sbjct: 250  EQLATSLRISRAELQMKMIECSLAREKIAMSNVRLVMSIAHKYDNMGAEMADLVQGGLIG 309

Query: 829  LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRLE 650
            LLRGIEKFDSSKG KISTYVYWWIRQGVSRALVENSRTLRLP+H+HERLS IRNAKIRLE
Sbjct: 310  LLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLRLPSHMHERLSLIRNAKIRLE 369

Query: 649  DKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNNL 470
            +KG+TPSIDRIAE LN+S KKVRNATEAVNKV SLDREAFPSLNGLPGETLHSYIADN +
Sbjct: 370  EKGITPSIDRIAECLNISQKKVRNATEAVNKVISLDREAFPSLNGLPGETLHSYIADNRI 429

Query: 469  ENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRERV 290
            ENNPWHGVDEWSLKDEVN L++ TL ERER+II LYYGLD+E  TWEDIS++IGLSRERV
Sbjct: 430  ENNPWHGVDEWSLKDEVNNLLNTTLRERERDIIRLYYGLDEECLTWEDISRRIGLSRERV 489

Query: 289  RQVGLVALEKLKHAARKRRLDTMLVKH 209
            RQVGLVALEKLKHAARK+RLD MLVKH
Sbjct: 490  RQVGLVALEKLKHAARKKRLDAMLVKH 516


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  694 bits (1792), Expect = 0.0
 Identities = 368/509 (72%), Positives = 425/509 (83%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+S+FY SDLT+KL S ++ G+  +  TS TK +I AKKS+N+GP
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITS-TKTLIVAKKSSNYGP 59

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
             FPS NRN QS++A+KE VDT SAPS A TQ  T + +E++ +D + S+E L+LLQKSML
Sbjct: 60   SFPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSML 119

Query: 1372 EKQWNLSFDQTGLLDAAGG-GQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQWNLSF++T   D+     QKKI VT SG+SARQRR +  R+   Q+   + ++  K 
Sbjct: 120  EKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQ 179

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L S VSPELLQ  LKGYVKGV+S++LLSHAEV  LS+ IKAGLS           LGC+P
Sbjct: 180  LKSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDP 239

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQ+A+SL+I R EL++K I CSLAR+KLAMSNVRLVMSIAQ+YD +GAEMADLVQGGL
Sbjct: 240  SDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAKIR
Sbjct: 300  IGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIR 359

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TPSIDRIAESLN+S KKVRNATEAV+KVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 360  LEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
             LENNPWHGVD+W+LKDEVNKLI+ TL ERE+EII LYYGLD ES TWEDISK+IGLSRE
Sbjct: 420  CLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRE 479

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARK++L+ MLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_012070278.1| PREDICTED: RNA polymerase sigma factor sigA [Jatropha curcas]
            gi|802585167|ref|XP_012070279.1| PREDICTED: RNA
            polymerase sigma factor sigA [Jatropha curcas]
            gi|643732469|gb|KDP39565.1| hypothetical protein
            JCGZ_02585 [Jatropha curcas]
          Length = 508

 Score =  689 bits (1779), Expect = 0.0
 Identities = 367/509 (72%), Positives = 424/509 (83%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGL AGKRLL+S+FY SDLT+KLF+V+D G+  + + SSTKNVI AKKS+N+G 
Sbjct: 1    MATAAVIGLHAGKRLLSSTFYYSDLTEKLFNVNDHGLTHYQS-SSTKNVIVAKKSSNYGS 59

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
             F S NRNAQS++A+KE VDT S+PS A T   T   +E+  +D + S+E L+LLQKSML
Sbjct: 60   SFQSSNRNAQSIKALKEHVDTASSPSTAATGFETFVDIEEASSDLDYSVEALLLLQKSML 119

Query: 1372 EKQWNLSFDQTGLLDAAGG-GQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQWNLSF++T   D+     QK+I +T SG+SARQRR +T R+   Q+ S++ +S  K 
Sbjct: 120  EKQWNLSFERTASSDSPSTKSQKQIPITCSGLSARQRRINTRRKNLIQSKSIVQASGFKQ 179

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L S VSPELL   LKGYVKG++S++LL+HAEV  LS+ IKAGLS           LGC+P
Sbjct: 180  LKSAVSPELLLNRLKGYVKGIVSEELLTHAEVVSLSRIIKAGLSLEEHKSRLKDRLGCDP 239

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQLA+SLRI   +LR+K+I CSLAR+KLAMSNVRLVMSIAQ+YD +GAEMADLVQGGL
Sbjct: 240  SDEQLATSLRISLADLRSKLIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAKIR
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIR 359

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TPSIDRIAESLNMS KKVRNATEA++KVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 360  LEEKGVTPSIDRIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
              ENNPWHGVDEW+LKDEVNKLI  TL +REREII LYYGLD E+ TWEDISK+IGLSRE
Sbjct: 420  CPENNPWHGVDEWALKDEVNKLIDLTLQQREREIIRLYYGLDNETLTWEDISKRIGLSRE 479

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARK++L+ MLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  684 bits (1764), Expect = 0.0
 Identities = 353/508 (69%), Positives = 418/508 (82%), Gaps = 2/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+SSFY SD+++K   ++DLG A  S   STKNV+ AKKS+N+ P
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQVGSTKNVVAAKKSSNYNP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLE 1370
             FPS NR  Q ++A+KE VDT+  S A+      + +E++ ++ + S+E L+LLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1369 KQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHL 1193
            KQWNLSF++T L D+      KK+ VT SG+SARQRR ++ ++   QN S++  +  K L
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQL 180

Query: 1192 GSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPS 1013
             S +SPEL+Q HLKGYVKGV+S++LL+HAEV  LSKKIK GLS           LGCEPS
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1012 DEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLI 833
             EQLA+SLRI R EL++ ++ECSLAR+KL MSNVRLVMSIAQ+YD +GA+MADL+QGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300

Query: 832  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRL 653
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 652  EDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNN 473
            E+KG+TP++DRIAE LNMS KKVRNATEA+ KVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 472  LENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRER 293
            +ENNPWHGVD+W+LKDEVNKLI  TLGEREREII LYYGLDKE  TWEDISK+IGLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 292  VRQVGLVALEKLKHAARKRRLDTMLVKH 209
            VRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  683 bits (1763), Expect = 0.0
 Identities = 355/508 (69%), Positives = 417/508 (82%), Gaps = 2/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+SSFY SD+++K   ++DLG A  S   STKNV+ AKKS+N+ P
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQVGSTKNVVAAKKSSNYNP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLE 1370
             FPS NR  Q ++A+KE VDT+  S A+      + +E++ ++ + S+E L+LLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1369 KQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHL 1193
            KQWNLSF++T L D+      KK+ VT SG+SARQRR ++ ++   QN S+   +  K L
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQL 180

Query: 1192 GSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPS 1013
             S +SPEL+Q HLKGYVKGV+S++LL+HAEV  LSKKIK GLS           LGCEPS
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1012 DEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLI 833
             EQLA+SLRI R EL++ ++ECSLAR+KL MSNVRLVMSIAQ+YD +GA+MADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 832  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRL 653
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 652  EDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNN 473
            E+KG+TPS+DRIAE LNMS KKVRNATEA+ KVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 472  LENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRER 293
            +ENNPWHGVD+W+LKDEVNKLI  TLGEREREII LYYGLDKE  TWEDISK+IGLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 292  VRQVGLVALEKLKHAARKRRLDTMLVKH 209
            VRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_008808794.1| PREDICTED: RNA polymerase sigma factor sigA [Phoenix dactylifera]
            gi|672177404|ref|XP_008808795.1| PREDICTED: RNA
            polymerase sigma factor sigA [Phoenix dactylifera]
            gi|672177406|ref|XP_008808796.1| PREDICTED: RNA
            polymerase sigma factor sigA [Phoenix dactylifera]
            gi|672177408|ref|XP_008808797.1| PREDICTED: RNA
            polymerase sigma factor sigA [Phoenix dactylifera]
          Length = 508

 Score =  683 bits (1762), Expect = 0.0
 Identities = 362/508 (71%), Positives = 412/508 (81%), Gaps = 3/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL++SFY +DL +KLF+V D G   FS TSSTKN I AK+S+NFG 
Sbjct: 1    MATAAVIGLSTGKRLLSTSFYPADLAEKLFAVPDHGSMQFS-TSSTKNTIAAKRSSNFGT 59

Query: 1546 GFPSNRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLEK 1367
              PSNR++Q+++A+KE VDT+A S A       D LE  E+D E SLEVLILLQKSMLEK
Sbjct: 60   NIPSNRHSQAIKALKEHVDTAALSTADAWFRRPDPLEDGESDLEYSLEVLILLQKSMLEK 119

Query: 1366 QWNLSFDQTGLLDAAGGGQKKIGVTRSGISARQRRTSTMRRTFKQNASMIP---SSKRKH 1196
            QW L F+Q   +D      KK  V RSGISAR+RRT T RR F ++A M P     + K 
Sbjct: 120  QWKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTVTRRRCFNRSAYMEPFNGGEEGKE 179

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L STVSPELLQ  ++GYV+G +S++LL+HAEV HLS+KI+AGLS           LG EP
Sbjct: 180  LRSTVSPELLQTRVRGYVRGTVSENLLTHAEVVHLSRKIRAGLSLEEKRMKLKEKLGFEP 239

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SD+QLAS LR+   EL +K+ ECSLAR+KLAMSNVRLVMSIAQKYD LGAEMADL+QGGL
Sbjct: 240  SDKQLASFLRMSHAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGGL 299

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKG KISTYVYWWIRQGVSRALVENSRTLRLP+HLHERLS IRNAKIR
Sbjct: 300  IGLLRGIEKFDSSKGCKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIR 359

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LEDKG+ PSID IAESLNMSPKKV+NATEAV+KVFSLDREAFPSLNGLPGETLHSYIAD 
Sbjct: 360  LEDKGVMPSIDNIAESLNMSPKKVKNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADK 419

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
            NL N PWHG ++WSLKDEVNKL+ ATL +RER II LYYG+  E+HTWEDIS+Q GLSRE
Sbjct: 420  NLANIPWHGFEDWSLKDEVNKLLHATLSKRERAIIRLYYGIGNETHTWEDISRQFGLSRE 479

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVK 212
            RVRQVGLVALEKLKHAAR+RRL+ +LVK
Sbjct: 480  RVRQVGLVALEKLKHAARRRRLEALLVK 507


>gb|KDO48032.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
            gi|641828897|gb|KDO48033.1| hypothetical protein
            CISIN_1g010521mg [Citrus sinensis]
          Length = 508

 Score =  682 bits (1760), Expect = 0.0
 Identities = 354/508 (69%), Positives = 417/508 (82%), Gaps = 2/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+SSFY SD+++K   ++DLG A  S   STKNV+ AKKS+N+ P
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQVGSTKNVVAAKKSSNYNP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLE 1370
             FPS NR  Q ++A+KE VDT+  S A+      + +E++ ++ + S+E L+LLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1369 KQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHL 1193
            KQWNLSF++T L D+      KK+ VT SG+SARQRR ++ ++   QN S++  +  K L
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1192 GSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPS 1013
             S +SPEL+Q  LKGYVKGV+S++LL+HAEV  LSKKIK GLS           LGCEPS
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 1012 DEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLI 833
             EQLA+SLRI R EL++ ++ECSLAR+KL MSNVRLVMSIAQ+YD +GA+MADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 832  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRL 653
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 652  EDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNN 473
            E+KG+TPS+DRIAE LNMS KKVRNATEA+ KVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 472  LENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRER 293
            +ENNPWHGVD+W+LKDEVNKLI  TLGEREREII LYYGLDKE  TWEDISK+IGLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 292  VRQVGLVALEKLKHAARKRRLDTMLVKH 209
            VRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_011012457.1| PREDICTED: RNA polymerase sigma factor sigA [Populus euphratica]
            gi|743936142|ref|XP_011012458.1| PREDICTED: RNA
            polymerase sigma factor sigA [Populus euphratica]
          Length = 509

 Score =  679 bits (1753), Expect = 0.0
 Identities = 359/509 (70%), Positives = 415/509 (81%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL+SSFY SDLT+KL SV+D G+  +  T++TKNV+ AKKS+N+GP
Sbjct: 2    MATAAVIGLSTGKRLLSSSFYYSDLTEKLSSVNDHGIT-YCPTATTKNVVVAKKSSNYGP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
             FPS NRN+ S++A+KE VDT SA S   T   T D  E++ +  + S+E L+LLQKSML
Sbjct: 61   NFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1372 EKQWNLSFDQTGLLDAAGG-GQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQWNLSF++T   D+      KKI VT SG+SARQRR +  R+   Q+  M  SS  K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L S +SP+LLQ  LKGYVKGV+S ++L H EV  LS+ I+AGLS           LGCEP
Sbjct: 181  LRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQ+A SLRI R +L+ K+I+CSLAR+KLAMSNVRLVMSIAQKYD +GAEMADLVQGGL
Sbjct: 241  SDEQIADSLRISRADLQAKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL  IRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TPSIDRIAESLNMS +KVRNATEA++KVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
              ENNPWHGVDEW+LK+EVNKLI +TL ERE+EII LY+GLD+E  TWEDISK++GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARKR  + MLVKH
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  677 bits (1747), Expect = 0.0
 Identities = 359/509 (70%), Positives = 416/509 (81%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS+GKRLL+SSFY SDLT+KL +V+D G+  +  T++TKNVI AKKS+N+GP
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGIT-YYPTATTKNVIVAKKSSNYGP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
             FPS NRN+ S++A+KE VDT SA S   T   T D  E++ +  + S+E L+LLQKSML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1372 EKQWNLSFDQTGLLDAAGG-GQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQWNLSF++T   D+      KKI VT SG+SARQRR +  R+   Q+  M  SS  K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L S  SP+LLQ  LKGYVKGV+S ++L H EV  LS+ I+AGLS           LGCEP
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQ+A SLRI R +L++K+I+CSLAR+KLAMSNVRLVMSIAQKYD +GAEMADLVQGGL
Sbjct: 241  SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL  IRNAKIR
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TPSIDRIAESLNMS +KVRNATEA++KVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
              ENNPWHGVDEW+LK+EVNKLI +TL ERE+EII LY+GLD+E  TWEDISK++GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARKR  + MLVKH
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
            gi|462415485|gb|EMJ20222.1| hypothetical protein
            PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  673 bits (1736), Expect = 0.0
 Identities = 359/511 (70%), Positives = 415/511 (81%), Gaps = 5/511 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL SSFY SD+T+KLF ++D         SSTKNV+TA+K +N   
Sbjct: 2    MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSS 61

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDL--LEKDENDFESSLEVLILLQKSM 1376
             FPS NR  QS+RA+KE V T++   + TQ    +L  LE++ +D E S+E L+LLQKSM
Sbjct: 62   RFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSM 121

Query: 1375 LEKQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRR-TSTMRRTFKQNASMIPSSKR 1202
            LEKQWNLSF++  L D+      KKI VT SG+SARQRR TST R+TF ++  ++  S  
Sbjct: 122  LEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPSTN 181

Query: 1201 KHLGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGC 1022
            K L + VSPELLQ H+KGYVKGV+S+DLL+H EV  LSKKIK GLS           LGC
Sbjct: 182  KPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLGC 241

Query: 1021 EPSDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQG 842
            EPSDEQLA+SLRI R +L++K+IEC LAR+KLAMSNVRLVMSIAQ+YD +GAEMADL+QG
Sbjct: 242  EPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQG 301

Query: 841  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAK 662
            GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK
Sbjct: 302  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAK 361

Query: 661  IRLEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIA 482
            IRLE+KG+TPSIDRIAESLNMS KKVRNATEA++KVFSLDR+AFPSLNGLPGET HSYIA
Sbjct: 362  IRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIA 421

Query: 481  DNNLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLS 302
            DN LEN PWHGVD W+LK+EV+KLI+  LGERE+EII LYYGL+ E  TWEDISK+IGLS
Sbjct: 422  DNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISKRIGLS 481

Query: 301  RERVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RERVRQVGLVALEKLKHAARKR ++ ML+KH
Sbjct: 482  RERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  671 bits (1730), Expect = 0.0
 Identities = 361/509 (70%), Positives = 417/509 (81%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGL+ GKRLL+SSF  SD+ +KL   +D G +    TSSTK++I AKKS+N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYG-SSHHQTSSTKSLIVAKKSSNCSQ 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
              PS NR AQS++A+KE VD+ S  S A+     S+ LE +  D + S+E L+LLQKSML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 1372 EKQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQW LSF++T   ++      KKI VT SG+SARQRR +T R+   QN S+I  +  K 
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPNA-KQ 179

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L S +SPELLQ  LKGYVKGV+S +LLSHAEV  LSKKIKAGLS           LGCEP
Sbjct: 180  LRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEP 239

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQLA+SL+I R ELR+K+IECSLAR+KLAMSNVRLVMSIAQ+YD +GAEM+DL+QGGL
Sbjct: 240  SDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGL 299

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAKIR
Sbjct: 300  IGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIR 359

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TP+IDRIAESLNMS KKVRNATEAV+KVFSLDR+AFPSLNGLPGET HSYIADN
Sbjct: 360  LEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADN 419

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
            ++EN PWHGVDEW+LKDEVN+LI+ TLGEREREII LYYGLDKES TWEDISK+IGLSRE
Sbjct: 420  HVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRIGLSRE 479

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 480  RVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_008234513.1| PREDICTED: RNA polymerase sigma factor sigA [Prunus mume]
          Length = 512

 Score =  668 bits (1724), Expect = 0.0
 Identities = 358/511 (70%), Positives = 413/511 (80%), Gaps = 5/511 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL SSFY SD+T+KLF ++D         SSTKNV+TA+K +N   
Sbjct: 2    MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSS 61

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDL--LEKDENDFESSLEVLILLQKSM 1376
             FPS NR  QS+RA+KE V T++   + TQ    +L  LE++ +D E S+E L+LLQKSM
Sbjct: 62   RFPSSNRPQQSIRALKEHVHTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSM 121

Query: 1375 LEKQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRR-TSTMRRTFKQNASMIPSSKR 1202
            LEKQWNLSF++  L D+      KKI VT SG+SARQRR TST R+T  ++  ++  S  
Sbjct: 122  LEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTLNKSTCVMHPSTN 181

Query: 1201 KHLGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGC 1022
            K L + VSPELLQ  +KGYVKGV+S+DLL+H EV  LSKKIK GLS           LGC
Sbjct: 182  KPLRAIVSPELLQNRVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLGC 241

Query: 1021 EPSDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQG 842
            EPSDEQLA+SLRI R +L++K+IEC LAR+KLAMSNVRLVMSIAQ+YD +GAEMADL+QG
Sbjct: 242  EPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQG 301

Query: 841  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAK 662
            GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK
Sbjct: 302  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAK 361

Query: 661  IRLEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIA 482
            IRLE+KG+TPSIDRIAESLNMS KKVRNATEA++KVFSLDR+AFPSLNGLPGET HSYIA
Sbjct: 362  IRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYIA 421

Query: 481  DNNLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLS 302
            DN LEN PWHGVD W+LK+EV+KLI+  LGEREREII LYYGL+ E  TWEDISK+IGLS
Sbjct: 422  DNRLENIPWHGVDAWALKEEVSKLINMMLGEREREIIQLYYGLENECLTWEDISKRIGLS 481

Query: 301  RERVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RERVRQVGLVALEKLKHAARKR ++ ML+KH
Sbjct: 482  RERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_010910228.1| PREDICTED: RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886771|ref|XP_010910229.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886775|ref|XP_010910230.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886779|ref|XP_010910231.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886783|ref|XP_010910232.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886789|ref|XP_010910234.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886793|ref|XP_010910235.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis] gi|743886797|ref|XP_010910236.1| PREDICTED:
            RNA polymerase sigma factor sigA isoform X3 [Elaeis
            guineensis]
          Length = 508

 Score =  665 bits (1716), Expect = 0.0
 Identities = 359/508 (70%), Positives = 403/508 (79%), Gaps = 3/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MA AAV GLS GKRLL++SFY SDL +KLF+V D     FS T+STKN I AKKS+NF  
Sbjct: 1    MAMAAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFS-TASTKNTIAAKKSSNFST 59

Query: 1546 GFPSNRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLEK 1367
               SNR++Q+++A+KE VDTSA S A T     DLLE  E+D E SLEVL+LLQKSMLEK
Sbjct: 60   NIRSNRHSQAIKALKEHVDTSALSTADTWFQRPDLLEDGESDLEYSLEVLLLLQKSMLEK 119

Query: 1366 QWNLSFDQTGLLDAAGGGQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSK---RKH 1196
            Q  L F+Q   +D      KK  V RSGISAR+RRT T    F QNA M P ++    K 
Sbjct: 120  QRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYMEPLNRVKEGKE 179

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L STVSPELLQ H++GYV+G IS++LLSHAEV HLS+KI+AGLS           LG EP
Sbjct: 180  LRSTVSPELLQMHVRGYVRGTISQNLLSHAEVVHLSRKIRAGLSLEENRMKLKEKLGFEP 239

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SD+QLAS L +   EL +K+ ECSLAR+KLAMSNVRLVMSIAQKYD LGAEMADL+QGGL
Sbjct: 240  SDKQLASFLGMSNAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGGL 299

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKG KISTYVYWWIR GVSRALVENSRTLRLPAHLHERLS IRNAK+R
Sbjct: 300  IGLLRGIEKFDSSKGCKISTYVYWWIRHGVSRALVENSRTLRLPAHLHERLSLIRNAKVR 359

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LEDKG+ PSID IAESLNMS KKVRNATEAV+KVFSLDREAFPSLNGLPGETLHSYIAD 
Sbjct: 360  LEDKGIIPSIDNIAESLNMSQKKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADK 419

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
            NL NNPWHG + WSLKDEV+KL+ ATL +RER II LYYG+  E HTWE IS+Q GLSRE
Sbjct: 420  NLGNNPWHGFENWSLKDEVDKLLRATLNKRERAIIRLYYGIGGECHTWEGISRQFGLSRE 479

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVK 212
            RVRQVGLVALEKLKHAAR+RRL+ +LVK
Sbjct: 480  RVRQVGLVALEKLKHAARRRRLEALLVK 507


>ref|XP_010910226.1| PREDICTED: RNA polymerase sigma factor sigA isoform X1 [Elaeis
            guineensis]
          Length = 593

 Score =  665 bits (1716), Expect = 0.0
 Identities = 359/508 (70%), Positives = 403/508 (79%), Gaps = 3/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MA AAV GLS GKRLL++SFY SDL +KLF+V D     FS T+STKN I AKKS+NF  
Sbjct: 86   MAMAAVFGLSRGKRLLSTSFYPSDLAEKLFAVPDHASMQFS-TASTKNTIAAKKSSNFST 144

Query: 1546 GFPSNRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLEK 1367
               SNR++Q+++A+KE VDTSA S A T     DLLE  E+D E SLEVL+LLQKSMLEK
Sbjct: 145  NIRSNRHSQAIKALKEHVDTSALSTADTWFQRPDLLEDGESDLEYSLEVLLLLQKSMLEK 204

Query: 1366 QWNLSFDQTGLLDAAGGGQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSK---RKH 1196
            Q  L F+Q   +D      KK  V RSGISAR+RRT T    F QNA M P ++    K 
Sbjct: 205  QRKLPFEQIKTVDDPRESCKKTEVIRSGISARKRRTITRMTCFNQNAYMEPLNRVKEGKE 264

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L STVSPELLQ H++GYV+G IS++LLSHAEV HLS+KI+AGLS           LG EP
Sbjct: 265  LRSTVSPELLQMHVRGYVRGTISQNLLSHAEVVHLSRKIRAGLSLEENRMKLKEKLGFEP 324

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SD+QLAS L +   EL +K+ ECSLAR+KLAMSNVRLVMSIAQKYD LGAEMADL+QGGL
Sbjct: 325  SDKQLASFLGMSNAELHSKLTECSLAREKLAMSNVRLVMSIAQKYDNLGAEMADLIQGGL 384

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDSSKG KISTYVYWWIR GVSRALVENSRTLRLPAHLHERLS IRNAK+R
Sbjct: 385  IGLLRGIEKFDSSKGCKISTYVYWWIRHGVSRALVENSRTLRLPAHLHERLSLIRNAKVR 444

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LEDKG+ PSID IAESLNMS KKVRNATEAV+KVFSLDREAFPSLNGLPGETLHSYIAD 
Sbjct: 445  LEDKGIIPSIDNIAESLNMSQKKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADK 504

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
            NL NNPWHG + WSLKDEV+KL+ ATL +RER II LYYG+  E HTWE IS+Q GLSRE
Sbjct: 505  NLGNNPWHGFENWSLKDEVDKLLRATLNKRERAIIRLYYGIGGECHTWEGISRQFGLSRE 564

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVK 212
            RVRQVGLVALEKLKHAAR+RRL+ +LVK
Sbjct: 565  RVRQVGLVALEKLKHAARRRRLEALLVK 592


>gb|AKC88633.1| sigma factor [Melianthus villosus]
          Length = 506

 Score =  665 bits (1715), Expect = 0.0
 Identities = 353/509 (69%), Positives = 410/509 (80%), Gaps = 3/509 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+SS Y SD  +KL   +D G   ++AT  TK V+ AKKS+N  P
Sbjct: 1    MATAAVIGLSAGKRLLSSSLYYSDYAEKLSYANDHG--HYNATP-TKTVVIAKKSSNCSP 57

Query: 1546 GFPS-NRNAQSLRAVKEDVDT-SAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSML 1373
             FPS NR  QS++A+KE VD  S PS A++    S+ +++   D E S+E L+LLQKSML
Sbjct: 58   RFPSSNRKTQSIKALKEHVDDISGPSTAESWFQRSNDVDEQNFDIEYSVEALLLLQKSML 117

Query: 1372 EKQWNLSFDQTGLLDAAGGGQ-KKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKH 1196
            EKQWNLSFD+T L D       K+I VT SG+SARQRR S  R+   +N+SM+ +S+   
Sbjct: 118  EKQWNLSFDKTMLTDLVKEKTCKRIPVTCSGVSARQRRMSNKRKILSENSSMMQTSRCNR 177

Query: 1195 LGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEP 1016
            L + + PEL+Q   KGYVKGV+S++LLSHAEV HLSKKIK GLS           LGCEP
Sbjct: 178  LRTIIGPELMQNRFKGYVKGVVSEELLSHAEVVHLSKKIKCGLSLEEHKLRLKKRLGCEP 237

Query: 1015 SDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGL 836
            SDEQLA+SLRI R ELR+K IE  LAR+KLAMSNVRLVMSIAQ+YD +GAEM+DLVQGGL
Sbjct: 238  SDEQLATSLRISRAELRSKWIESGLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLVQGGL 297

Query: 835  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIR 656
            IGLLRGIEKFDS+KGFKISTYVYWWIRQGVSRAL+ENSRTLRLP HLHERL  IRNAKIR
Sbjct: 298  IGLLRGIEKFDSAKGFKISTYVYWWIRQGVSRALIENSRTLRLPTHLHERLGLIRNAKIR 357

Query: 655  LEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADN 476
            LE+KG+TPSI+R+AE LNMS KK+RNATEA++KVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 358  LEEKGITPSIERLAECLNMSKKKIRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 417

Query: 475  NLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRE 296
             L+NNPWHGVDEW+LKDEV KLI  TLGEREREII LY+GLD E  TWEDISK+IGLSRE
Sbjct: 418  CLDNNPWHGVDEWALKDEVKKLIEMTLGEREREIIRLYHGLDNECLTWEDISKRIGLSRE 477

Query: 295  RVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RVRQVGLVA+EKLKHAAR++ ++ MLVKH
Sbjct: 478  RVRQVGLVAMEKLKHAARRKHMEAMLVKH 506


>gb|KDO48034.1| hypothetical protein CISIN_1g010521mg [Citrus sinensis]
          Length = 499

 Score =  663 bits (1710), Expect = 0.0
 Identities = 347/508 (68%), Positives = 410/508 (80%), Gaps = 2/508 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLSAGKRLL+SSFY SD+++K   ++DLG A  S   STKNV+ AKKS+N+ P
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSAN-SQVGSTKNVVAAKKSSNYNP 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLE 1370
             FPS NR  Q ++A+KE VDT+  S A+      + +E++ ++ + S+E L+LLQKSMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 1369 KQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHL 1193
            KQWNLSF++T L D+      KK+ VT SG+SARQRR ++ ++   QN S++  +  K L
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSILQQNGSKQL 180

Query: 1192 GSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPS 1013
             S +SPEL+Q  LKGYVKGV+S++LL+HAEV  LSKKIK GLS                 
Sbjct: 181  RSMISPELIQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLK-------- 232

Query: 1012 DEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLI 833
             E+L SSLRI R EL++ ++ECSLAR+KL MSNVRLVMSIAQ+YD +GA+MADLVQGGLI
Sbjct: 233  -ERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 291

Query: 832  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRL 653
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL  IRNAK+RL
Sbjct: 292  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 351

Query: 652  EDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNN 473
            E+KG+TPS+DRIAE LNMS KKVRNATEA+ KVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 352  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 411

Query: 472  LENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRER 293
            +ENNPWHGVD+W+LKDEVNKLI  TLGEREREII LYYGLDKE  TWEDISK+IGLSRER
Sbjct: 412  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 471

Query: 292  VRQVGLVALEKLKHAARKRRLDTMLVKH 209
            VRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 472  VRQVGLVALEKLKHAARKKKMEAMLVKH 499


>ref|XP_012492333.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X2
            [Gossypium raimondii] gi|763777227|gb|KJB44350.1|
            hypothetical protein B456_007G247500 [Gossypium
            raimondii]
          Length = 508

 Score =  662 bits (1708), Expect = 0.0
 Identities = 355/511 (69%), Positives = 415/511 (81%), Gaps = 5/511 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL+SSF  S+  DKL    D G + +  T STK ++ AK+S+N   
Sbjct: 2    MATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYG-SSYYQTPSTKTLMVAKRSSNCSQ 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQ---HPTSDLLEKDENDFESSLEVLILLQKS 1379
              PS NR+ QS++A KE VDT A S++  +   H T+DL E++  D + S+E L+LLQKS
Sbjct: 61   NLPSSNRHTQSIKAFKEHVDT-ASSISTVEPWIHGTNDL-EQESYDLDYSVEALLLLQKS 118

Query: 1378 MLEKQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKR 1202
            MLEKQW LSF++T   ++       K+ VT SG+SARQRR ST R+   QN SMI  +  
Sbjct: 119  MLEKQWTLSFERTMFTESPSRKTHNKVPVTCSGVSARQRRFSTKRKILSQNKSMIQPNA- 177

Query: 1201 KHLGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGC 1022
            K L S + PELLQ  LKGYVKGV+S+DLLSHAEV  LS+KIKAGLS           LGC
Sbjct: 178  KQLRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSRKIKAGLSLEEHRLRLKERLGC 237

Query: 1021 EPSDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQG 842
            EPSDEQLA+SL++ R ELR++ IECSLAR+KLAMSNVRLVMSIAQ+YD +GAEM+DL+QG
Sbjct: 238  EPSDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQG 297

Query: 841  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAK 662
            GLIGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLP +LHERL  IRNAK
Sbjct: 298  GLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAK 357

Query: 661  IRLEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIA 482
             RLE+KG+TP+IDRIAESLNMS KKVRNATEAV+KVFSLDR+AFPSLNGLPGET HSYIA
Sbjct: 358  YRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 417

Query: 481  DNNLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLS 302
            DN++ENNPWHGVDEW+LKDEVN+LI+ TLGEREREII LY+GLDKES TWEDISK+IGLS
Sbjct: 418  DNHVENNPWHGVDEWALKDEVNRLINITLGEREREIIRLYHGLDKESLTWEDISKRIGLS 477

Query: 301  RERVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RERVRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 478  RERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>gb|KHG03684.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
            gi|728838604|gb|KHG18047.1| RNA polymerase sigma factor
            rpoD [Gossypium arboreum]
          Length = 508

 Score =  657 bits (1696), Expect = 0.0
 Identities = 353/511 (69%), Positives = 412/511 (80%), Gaps = 5/511 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIGLS GKRLL+SSF  S+  DKL    D G + +  T STK +I AK+S+N   
Sbjct: 2    MATAAVIGLSTGKRLLSSSFSYSETVDKLSYAGDYG-SSYYQTPSTKTLIVAKRSSNCSQ 60

Query: 1546 GFPS-NRNAQSLRAVKEDVDTSAPSMAQTQ---HPTSDLLEKDENDFESSLEVLILLQKS 1379
              PS NR+ Q ++A K  VDT A S++  +   H  +DL E++  D + S+E L+LLQKS
Sbjct: 61   NLPSSNRHTQLIKAFKGHVDT-ASSISTVEPWIHGANDL-EQESYDLDCSVEALLLLQKS 118

Query: 1378 MLEKQWNLSFDQTGLLDAAGGG-QKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKR 1202
            MLEKQW LSF++T  +++       K+ VT SG+SARQRR +T R+   QN SMI  +  
Sbjct: 119  MLEKQWTLSFERTMFIESPSRKTHSKVPVTCSGVSARQRRFNTKRKILSQNKSMIQPNA- 177

Query: 1201 KHLGSTVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGC 1022
            K L S + PELLQ  LKGYVKGV+S+DLLSHAEV  LSKKIKAGLS           LGC
Sbjct: 178  KQLRSLIGPELLQNRLKGYVKGVVSEDLLSHAEVVRLSKKIKAGLSLEEHILRLKERLGC 237

Query: 1021 EPSDEQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQG 842
            EPSDEQLA+SL++ R ELR++ IECSLAR+KLAMSNVRLVMSIAQ+YD +GAEM+DL+QG
Sbjct: 238  EPSDEQLATSLKVSRAELRSRSIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQG 297

Query: 841  GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAK 662
            GLIGLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLP +LHERL  IRNAK
Sbjct: 298  GLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAK 357

Query: 661  IRLEDKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIA 482
             RLE+KG+TP+IDRIAESLNMS KKVRNATEAV+KVFSLDR+AFPSLNGLPGET HSYIA
Sbjct: 358  YRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIA 417

Query: 481  DNNLENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLS 302
            DN++ENNPWHGVDEW+LKDEVN+LI  TLGEREREII LY+GLDKES TWEDISK+IGLS
Sbjct: 418  DNHVENNPWHGVDEWALKDEVNRLIDITLGEREREIIRLYHGLDKESLTWEDISKRIGLS 477

Query: 301  RERVRQVGLVALEKLKHAARKRRLDTMLVKH 209
            RERVRQVGLVALEKLKHAARK++++ MLVKH
Sbjct: 478  RERVRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006878659.1| PREDICTED: RNA polymerase sigma factor sigA [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  654 bits (1686), Expect = 0.0
 Identities = 349/507 (68%), Positives = 401/507 (79%), Gaps = 1/507 (0%)
 Frame = -1

Query: 1726 MATAAVIGLSAGKRLLASSFYSSDLTDKLFSVHDLGVAPFSATSSTKNVITAKKSANFGP 1547
            MATAAVIG+S GKRLL SSF +SD+ +++  ++D G   F A S  K+ I +KKS  FGP
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDI-ERVIPIYDFGATQFPAVSH-KSFIVSKKSPGFGP 58

Query: 1546 GFPSNRNAQSLRAVKEDVDTSAPSMAQTQHPTSDLLEKDENDFESSLEVLILLQKSMLEK 1367
              PSNR  Q + A+KE V+  APS + +   T     +   DFESSLE LILLQKSMLEK
Sbjct: 59   NSPSNRQTQYINAIKEHVN--APSSSSSSSTT-----EANPDFESSLEALILLQKSMLEK 111

Query: 1366 QWNLSFDQTGL-LDAAGGGQKKIGVTRSGISARQRRTSTMRRTFKQNASMIPSSKRKHLG 1190
            QWNLSFDQ G   D      KK+GV  SG SARQRR S +RR   Q A  +   ++K   
Sbjct: 112  QWNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNS-LRRPLNQRAGTVLVRRKKQAT 170

Query: 1189 STVSPELLQGHLKGYVKGVISKDLLSHAEVTHLSKKIKAGLSXXXXXXXXXXXLGCEPSD 1010
              VSPELLQGH +GYVKG+ +  LLSHAEV HLS KI+AGLS           LG +PSD
Sbjct: 171  PIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKLGFDPSD 230

Query: 1009 EQLASSLRIPRTELRTKMIECSLARDKLAMSNVRLVMSIAQKYDKLGAEMADLVQGGLIG 830
            E LASSL+I R+EL +K+IECSLA++KLAMSN+RLVMSIAQKYD +G EMADL+QGGLIG
Sbjct: 231  ELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLIQGGLIG 290

Query: 829  LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSAIRNAKIRLE 650
            LLRGIEKFDSSKGFKISTYVYWWIRQGVSRA+VENSRTLRLP HLHERLS IRNAKIRL+
Sbjct: 291  LLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERLSLIRNAKIRLK 350

Query: 649  DKGMTPSIDRIAESLNMSPKKVRNATEAVNKVFSLDREAFPSLNGLPGETLHSYIADNNL 470
            ++G+TPSI RIA+SLNMS KKV+NATEA+ KVFSLDREAFP+LNGLPGETLHSYIADNNL
Sbjct: 351  EQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTLNGLPGETLHSYIADNNL 410

Query: 469  ENNPWHGVDEWSLKDEVNKLISATLGEREREIISLYYGLDKESHTWEDISKQIGLSRERV 290
             NNPWHGVDEW LK EVNKLIS+TL ERE++II LYYGLDKE HTWEDIS++IGLSRERV
Sbjct: 411  MNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKECHTWEDISRKIGLSRERV 470

Query: 289  RQVGLVALEKLKHAARKRRLDTMLVKH 209
            RQVGLVALEKLK+AAR +RL+ MLVKH
Sbjct: 471  RQVGLVALEKLKNAARNKRLEAMLVKH 497