BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum23_contig00000526
         (3173 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron sp...  1153   0.0  
ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron sp...  1149   0.0  
ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron sp...  1149   0.0  
ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron sp...  1149   0.0  
ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron sp...  1028   0.0  
ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron sp...  1020   0.0  
ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...  1019   0.0  
ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron sp...  1011   0.0  
ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron sp...   994   0.0  
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...   990   0.0  
ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron sp...   990   0.0  
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   987   0.0  
ref|XP_010917579.1| PREDICTED: chloroplastic group IIA intron sp...   971   0.0  
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...   966   0.0  
ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron sp...   959   0.0  
gb|KDO45877.1| hypothetical protein CISIN_1g002316mg [Citrus sin...   959   0.0  
gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitat...   957   0.0  
ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron sp...   956   0.0  
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...   955   0.0  
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   955   0.0  

>ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nelumbo nucifera]
            gi|720071686|ref|XP_010278132.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
            gi|720071690|ref|XP_010278133.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
          Length = 914

 Score = 1153 bits (2982), Expect = 0.0
 Identities = 609/918 (66%), Positives = 707/918 (77%), Gaps = 8/918 (0%)
 Frame = -1

Query: 2924 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2744 KSNLVAE---NRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNX 2574
             S+   +   +R+    ETPISQ+ SNG F + +W+ KW+ T  QNLP RP+ VLDYRN 
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2573 XXXXXXXXXXXXXXXXXXT---MDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2403
                              +   MD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2402 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2223
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2222 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2043
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2042 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATG 1863
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K   
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1862 DSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1683
            D  E SS+G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1682 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1503
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1502 MAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1323
            MAM KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1322 DVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKR 1143
            DVTEALLERERLAK LQDEEE+ARL+ASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1142 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 963
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 962  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 783
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 782  IALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 603
            IALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 602  EALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 423
            EAL KHIS L ++V+ L+SELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHP--ETNFPYDHQNPVQGSDDDTSKFCAMG 249
            T  S  DN D               +I++FH   ETNFPYD QN    +D +  +  ++ 
Sbjct: 844  TYDS--DNND----------ADPKDAIQNFHAEIETNFPYDEQNWAGETDSEALQAYSLL 891

Query: 248  PTEPYSQRSEGVEIKETN 195
             T     R+    ++++N
Sbjct: 892  ETNKSCTRTNEARMEDSN 909


>ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X4 [Nelumbo nucifera]
          Length = 880

 Score = 1149 bits (2973), Expect = 0.0
 Identities = 605/884 (68%), Positives = 693/884 (78%), Gaps = 8/884 (0%)
 Frame = -1

Query: 2924 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2744 KSNLVAE---NRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNX 2574
             S+   +   +R+    ETPISQ+ SNG F + +W+ KW+ T  QNLP RP+ VLDYRN 
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2573 XXXXXXXXXXXXXXXXXXT---MDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2403
                              +   MD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2402 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2223
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2222 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2043
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2042 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATG 1863
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K   
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1862 DSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1683
            D  E SS+G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1682 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1503
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1502 MAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1323
            MAM KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1322 DVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKR 1143
            DVTEALLERERLAK LQDEEE+ARL+ASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1142 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 963
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 962  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 783
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 782  IALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 603
            IALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 602  EALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 423
            EAL KHIS L ++V+ L+SELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHP--ETNFPYDHQN 297
            T  S  DN D               +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Nelumbo nucifera]
          Length = 896

 Score = 1149 bits (2973), Expect = 0.0
 Identities = 605/884 (68%), Positives = 693/884 (78%), Gaps = 8/884 (0%)
 Frame = -1

Query: 2924 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2744 KSNLVAE---NRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNX 2574
             S+   +   +R+    ETPISQ+ SNG F + +W+ KW+ T  QNLP RP+ VLDYRN 
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2573 XXXXXXXXXXXXXXXXXXT---MDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2403
                              +   MD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2402 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2223
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2222 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2043
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2042 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATG 1863
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K   
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1862 DSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1683
            D  E SS+G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1682 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1503
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1502 MAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1323
            MAM KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1322 DVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKR 1143
            DVTEALLERERLAK LQDEEE+ARL+ASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1142 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 963
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 962  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 783
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 782  IALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 603
            IALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 602  EALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 423
            EAL KHIS L ++V+ L+SELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHP--ETNFPYDHQN 297
            T  S  DN D               +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nelumbo nucifera]
          Length = 919

 Score = 1149 bits (2973), Expect = 0.0
 Identities = 605/884 (68%), Positives = 693/884 (78%), Gaps = 8/884 (0%)
 Frame = -1

Query: 2924 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2744 KSNLVAE---NRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNX 2574
             S+   +   +R+    ETPISQ+ SNG F + +W+ KW+ T  QNLP RP+ VLDYRN 
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2573 XXXXXXXXXXXXXXXXXXT---MDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2403
                              +   MD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2402 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2223
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2222 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2043
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2042 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATG 1863
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K   
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1862 DSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1683
            D  E SS+G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1682 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1503
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1502 MAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1323
            MAM KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1322 DVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKR 1143
            DVTEALLERERLAK LQDEEE+ARL+ASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1142 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 963
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 962  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 783
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 782  IALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 603
            IALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 602  EALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 423
            EAL KHIS L ++V+ L+SELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHP--ETNFPYDHQN 297
            T  S  DN D               +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 899

 Score = 1028 bits (2657), Expect = 0.0
 Identities = 549/882 (62%), Positives = 655/882 (74%), Gaps = 12/882 (1%)
 Frame = -1

Query: 2918 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKS 2739
            Q++PT+  DSFQ+S S+F G  +   R   S P KKH F +   TISS   PE+NP +KS
Sbjct: 8    QLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKS 67

Query: 2738 NLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXX 2559
            N V +N+       PISQ     +F + +W+DKW+ +   N PK P+AVLDY++      
Sbjct: 68   NFVRKNQ-------PISQYKPKKNFSSSSWIDKWNESHKHNCPKPPRAVLDYQSSESGNL 120

Query: 2558 XXXXXXXXXXXXXT------MDRIVEKLKRFGYVDDMIERN----ERVPERGSVEDIFYV 2409
                                M++IVEKLK+FGYVDD  E      +RV E+GSVEDIFYV
Sbjct: 121  SGSGYAEGDSGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDRVMEKGSVEDIFYV 180

Query: 2408 EEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAE 2229
            EEG LPNSRGGF  ESPLG+EN   GGDG+  FPWEK     +    SVR R+S+TS+AE
Sbjct: 181  EEGKLPNSRGGFSEESPLGIENVF-GGDGKVRFPWEKPKEEEKQEEGSVR-RKSRTSLAE 238

Query: 2228 LTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMK 2049
            LTLP+SELRRL +L    K + +IGG GVT+A+V+ IHE+WK SE+VRLK EGPP LNMK
Sbjct: 239  LTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPALNMK 298

Query: 2048 RLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDS--FSIATE 1875
            R+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   VK   Q+  K +  S  F    +
Sbjct: 299  RMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPS---VKLNKQIYKKNDTSSAPFPTVAD 355

Query: 1874 KATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPG 1695
            K+ GD  E +S+  ++     LE+T++EK++   + E+KYE E+DKLLD LGPR+ DWPG
Sbjct: 356  KSVGDFAELASYSNVKTPKEKLENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPG 415

Query: 1694 SGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQH 1515
              PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+G KE TSLRRLARVLPPHFALGRSRQ 
Sbjct: 416  CDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQL 475

Query: 1514 QGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKN 1335
            QGLA+AMAKLWE+S IA IALKRGVQLTTSERMAEDIK+LTGG +++RNKDF+VFYRGKN
Sbjct: 476  QGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKN 535

Query: 1334 FLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADAR 1155
            FLSPDVTEALLERERLAK LQDEEE+ARL+AS+ +I + E  +  GT GTL ETL+ADA+
Sbjct: 536  FLSPDVTEALLERERLAKSLQDEEEQARLRASAMIIPNVEVAQHFGTTGTLGETLDADAK 595

Query: 1154 WGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERS 975
            WGKRLD E   K+MR A+  RHA LVRKL+ KL  AERKLM+AE  L+KVE  L+P+++ 
Sbjct: 596  WGKRLDKE---KVMREADILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQ 652

Query: 974  SDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFS 795
            +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA+ F 
Sbjct: 653  ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFE 712

Query: 794  QVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIE 615
            QVKNIALALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE
Sbjct: 713  QVKNIALALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIE 772

Query: 614  LQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXE 435
            LQR EAL KHIS +Q KV  L+ E++QM+SVKD+GDE LY KL+S+YP+          +
Sbjct: 773  LQRQEALLKHISAVQSKVDTLRCEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEGD 830

Query: 434  AYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPY 309
            AYLET +S  D ED             N SI + H ETNFPY
Sbjct: 831  AYLETYNSENDGEDE-----------GNYSICNPHLETNFPY 861


>ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Malus domestica]
          Length = 894

 Score = 1020 bits (2637), Expect = 0.0
 Identities = 545/880 (61%), Positives = 653/880 (74%), Gaps = 6/880 (0%)
 Frame = -1

Query: 2918 QIHPTAFIDSFQASLSRFSGYRLQFLRYSH--SNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            Q++PT   DSFQ SLS+F+G  +QF RY H  S P  KH F +    ISS   P++NP +
Sbjct: 8    QLYPTNLFDSFQRSLSKFNGPHIQFFRYGHGSSTPFNKHTFYATHSIISS---PDQNPVR 64

Query: 2744 KSNLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXX 2565
            KSN V  NR        I Q     +    +W+DKW+ +  +N  K P+AVLDY++    
Sbjct: 65   KSNFVGRNRS-------IYQYKPXRNLCTSSWIDKWNESHKRNRLKPPQAVLDYQSSESG 117

Query: 2564 XXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMIE----RNERVPERGSVEDIFYVEEGM 2397
                            M +IVEKL +FGYVDD  E      ERV E+GSVEDIFYVEEGM
Sbjct: 118  NLSGSGNGGGST----MQKIVEKLTKFGYVDDSXEGKGEARERVIEKGSVEDIFYVEEGM 173

Query: 2396 LPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLP 2217
            LPNSRGGF AESPLG+EN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP
Sbjct: 174  LPNSRGGFSAESPLGIENVF-GSDGKVRFPWEKPAEEEKQDZGSVR-RKSRTSVAELTLP 231

Query: 2216 DSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHE 2037
            +SELRRLR+L    K + KIGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HE
Sbjct: 232  ESELRRLRNLTFQKKHKTKIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHE 291

Query: 2036 ILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATGDS 1857
            ILERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+  +     +  SF    +K+ GD 
Sbjct: 292  ILERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKRIYKKKEISSSTSFPNVADKSLGDF 351

Query: 1856 IEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1677
            +E +S+G +       E T+ EKK+ + +PE+KYE E+DKLLD LGPR+ DWPG  PLPV
Sbjct: 352  VELASYGNVNTPQEKPESTSLEKKDTDQLPEVKYEDEVDKLLDSLGPRFKDWPGCDPLPV 411

Query: 1676 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1497
            DAD+LPG+VPGY+ PFR+LPYGV  ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 412  DADMLPGLVPGYEPPFRVLPYGVXSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 471

Query: 1496 MAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1317
            MAKLWERS IA IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 472  MAKLWERSLIAKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 531

Query: 1316 TEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKRLD 1137
            TEALLERERLAK LQDEEE+ARL+AS+ +I + E+ +  GTAGTL ETL+ADA+WGK +D
Sbjct: 532  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLAETLDADAKWGKMMD 591

Query: 1136 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 957
            + ++ K+M+ A+  RHA+LVRKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 592  NHHKKKVMQEADILRHANLVRKLERKLAFAERKLMKAEQALSKVEECLKPSTLQADPDSI 651

Query: 956  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNIA 777
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK IA
Sbjct: 652  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 711

Query: 776  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 597
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 712  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 771

Query: 596  LCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETC 417
            L KHIS +Q KV  L+SE++QM+ VK+ GDE LY KL+S+YP+          + YLET 
Sbjct: 772  LLKHISXVQSKVDTLRSEIEQMDVVKERGDEVLYNKLDSSYPT-DDDDDSEEEDVYLET- 829

Query: 416  HSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
            +S  DN +  GN S+             H ETNFPY  QN
Sbjct: 830  YSXEDNGEDEGNYST----------HDPHLETNFPYHIQN 859


>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
            gi|462423956|gb|EMJ28219.1| hypothetical protein
            PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 549/908 (60%), Positives = 660/908 (72%), Gaps = 12/908 (1%)
 Frame = -1

Query: 2918 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKS 2739
            Q++PT+  DSFQ+S S+F G  +   R   S P KKH F +   TISS   PE+NP +KS
Sbjct: 8    QLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKS 67

Query: 2738 NLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXX 2559
            N V +N+       PISQ     +F + +W+DKW+ +   N PK P+AVLDY++      
Sbjct: 68   NFVRKNQ-------PISQYKPKKNFSSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNL 120

Query: 2558 XXXXXXXXXXXXXT------MDRIVEKLKRFGYVDDMIERN----ERVPERGSVEDIFYV 2409
                                M++IVEKLK+FGYVDD  E      + V E+GSVEDIFY+
Sbjct: 121  SGSGYAEGDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDSVIEKGSVEDIFYI 180

Query: 2408 EEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAE 2229
            EEGMLPNSRGGF  ESPLG+EN   GGDG+  FPWEK     +    SVR R+S+TS+AE
Sbjct: 181  EEGMLPNSRGGFSEESPLGIENVF-GGDGKVRFPWEKPKEEEKQEEGSVR-RKSRTSLAE 238

Query: 2228 LTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMK 2049
            LTLP+SELRRL +L    K + +IGG GVT+A+V+ IHE+WK SE+VRLK EGPP LNMK
Sbjct: 239  LTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPALNMK 298

Query: 2048 RLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--E 1875
            R+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   VK   ++  K +  S  + T  +
Sbjct: 299  RMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPS---VKLNKRIYKKNDISSAPLPTVAD 355

Query: 1874 KATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPG 1695
            K+ GD  E +S+  ++      E+T++EK++   + E+KYE E+DKLLD LGPR+ DWPG
Sbjct: 356  KSVGDFAELASYSNVKTPQEKSENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPG 415

Query: 1694 SGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQH 1515
              PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+G KE TSLRRLARVLPPHFALGRSRQ 
Sbjct: 416  CDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQL 475

Query: 1514 QGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKN 1335
            QGLA+AMAKLWE+S IA IALKRGVQLTTSERMAEDIK+LTGG +++RNKDF+VFYRGKN
Sbjct: 476  QGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKN 535

Query: 1334 FLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADAR 1155
            FLSPDVTEALLERERLAK LQDEEE+ARL+AS+  I + E  +  GTAGTL ETL+ADA+
Sbjct: 536  FLSPDVTEALLERERLAKSLQDEEEQARLRASAMFIPNVEVAQHFGTAGTLGETLDADAK 595

Query: 1154 WGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERS 975
            WGKRLD E   K+MR A+  RHA LVRKL+ KL  AERKLM+AE  L+KVE  L+P+++ 
Sbjct: 596  WGKRLDKE---KVMREADILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQ 652

Query: 974  SDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFS 795
            +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA+ F 
Sbjct: 653  ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFE 712

Query: 794  QVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIE 615
            QVKNIALALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE
Sbjct: 713  QVKNIALALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIE 772

Query: 614  LQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXE 435
            LQR EAL KHIS +Q KV  L+SE++QM+SVKD+GDE LY KL+S+YP+          +
Sbjct: 773  LQRQEALLKHISAVQSKVDTLRSEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEVD 830

Query: 434  AYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQNPVQGSDDDTSKFCA 255
            AYLET +   + ED             N SI +   ETNFPY      Q   +       
Sbjct: 831  AYLETYNRENEGEDE-----------GNYSICNPQLETNFPYFENQDSQTELEVPQHHLH 879

Query: 254  MGPTEPYS 231
              PT  Y+
Sbjct: 880  AVPTNSYA 887


>ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Malus domestica]
          Length = 882

 Score = 1011 bits (2614), Expect = 0.0
 Identities = 537/880 (61%), Positives = 653/880 (74%), Gaps = 6/880 (0%)
 Frame = -1

Query: 2918 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKS 2739
            Q++PT+  DSFQ+SLS+F+   +QF RY  S P K H F +    ISS   P+ NP +KS
Sbjct: 8    QLYPTSLFDSFQSSLSKFNSAHIQFFRYGSSIPFKNHTFYTTHCIISSPLNPDPNPMRKS 67

Query: 2738 NLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXX 2559
            N V  NR       P+ Q     +  + +W++KW+ +   N PK P+AVLDY++      
Sbjct: 68   NFVGRNR-------PVYQCKLKRNLCSSSWINKWNESHKHNRPKPPRAVLDYQSSEGGNG 120

Query: 2558 XXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMI----ERNERVPERGSVEDIFYVEEGMLP 2391
                          M++IVEKLK+FGYVDD      E   RV E+GSVEDIFYVEEGMLP
Sbjct: 121  SGNGGGST------MEKIVEKLKKFGYVDDSNDSKGEVRGRVIEKGSVEDIFYVEEGMLP 174

Query: 2390 NSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPDS 2211
            NSRG F A+SPLGVEN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP+S
Sbjct: 175  NSRGRFSADSPLGVENVF-GSDGKVXFPWEKPAEEEKQEEGSVR-RKSRTSVAELTLPES 232

Query: 2210 ELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEIL 2031
            ELRRLR+L    K + +IGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HEIL
Sbjct: 233  ELRRLRNLTFQKKHKTRIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHEIL 292

Query: 2030 ERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--EKATGDS 1857
            ERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+   +  K +  S S+ T  +K  GD 
Sbjct: 293  ERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKR---IYKKNDSSSASLPTVADKXVGDF 349

Query: 1856 IEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1677
            +E +S+  +      LE T  EKK+   +PE+KYE E+D+LLD LGPR+ DWPG  PLPV
Sbjct: 350  VEIASYXNVNTPQEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPV 409

Query: 1676 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1497
            DAD+LPG+VPGY+ PFR+LPYGVR ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 410  DADMLPGIVPGYEPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 469

Query: 1496 MAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1317
            MAKLWERS I  IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 470  MAKLWERSLIXKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 529

Query: 1316 TEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKRLD 1137
            TEALLERERLAK LQDEEE+ARL+AS+ +I + E+ +  GTAGTL ETL+ADA+WGKR+D
Sbjct: 530  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMD 589

Query: 1136 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 957
            + ++ K+M+ A+  RH++L RKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 590  NHHKKKVMQEADILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSI 649

Query: 956  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNIA 777
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK IA
Sbjct: 650  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 709

Query: 776  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 597
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 710  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 769

Query: 596  LCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETC 417
            L KHIS +Q KV  L+SE++QM++VK+ GDE LY+KL+S+YP+          + YLET 
Sbjct: 770  LLKHISVVQSKVDTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETY 828

Query: 416  HSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
             +  D ED             N S    H E+ FP++ QN
Sbjct: 829  SAENDGEDE-----------GNYSTHDPHLESIFPFNIQN 857


>ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Phoenix dactylifera]
          Length = 895

 Score =  994 bits (2571), Expect = 0.0
 Identities = 541/859 (62%), Positives = 634/859 (73%), Gaps = 5/859 (0%)
 Frame = -1

Query: 2933 VSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAPFPER 2757
            ++ T Q+HP    DS  ASLSR    RL   R S S  P KK  FS+N          ++
Sbjct: 3    LAPTLQLHPAPIFDSLHASLSRLQSPRLLLFRSSSSTAPSKKLRFSAN-------SIHDQ 55

Query: 2756 NPQKKSNLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRN 2577
             P  KS+        GP   P  + P+        W+  W+ ++    PKRP+A LDYR 
Sbjct: 56   APDGKSSPYP-----GPGHRP-RRLPAGDLSSRPTWIQSWNQSRLLTSPKRPRAFLDYRE 109

Query: 2576 XXXXXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMIERNER-VPERGSVEDIFYVEEG 2400
                                M++IVEKLK+FGY+D   ER E  +PE+GSVEDIFY E+G
Sbjct: 110  GISSDDDVVGTSRSTGSST-MEKIVEKLKKFGYIDVSDERKESPLPEKGSVEDIFYAEDG 168

Query: 2399 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLN--GEAVRNSVRMRRSKTSVAEL 2226
            +LP+SRGG   +    V            FPWEK   N  G+   +S+R RRSKTS+AEL
Sbjct: 169  ILPDSRGGLSLDLNKEVR-----------FPWEKPLQNKEGDGGGSSMRKRRSKTSLAEL 217

Query: 2225 TLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKR 2046
            TLP+ ELRRLRH+AV +KS+ KI GAGVTK IVD IHE+WK +EVVRLKCEG P LNMKR
Sbjct: 218  TLPEGELRRLRHMAVRIKSKTKIKGAGVTKDIVDLIHEQWKTTEVVRLKCEGAPALNMKR 277

Query: 2045 LHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKAT 1866
             HEILERKTGGLVIWRSGTS+SLYRGVGYE+P  Q  KK+ Q V +   D+F+  T   T
Sbjct: 278  THEILERKTGGLVIWRSGTSISLYRGVGYEIP--QPEKKQYQSVQRSAVDTFNKDTYYPT 335

Query: 1865 GDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGP 1686
            G SIE      +Q  H  L  + E+KK+     EIKYE EIDKLLDGLGPRYTDWPGSGP
Sbjct: 336  GVSIENGRGNNIQDLHEDLTASLEKKKDTEPDAEIKYEHEIDKLLDGLGPRYTDWPGSGP 395

Query: 1685 LPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGL 1506
            LPVDADLLPGV+PGYK PFRILPYGVR T+G KE T+LRRLAR+LPPHFALGRSRQHQGL
Sbjct: 396  LPVDADLLPGVIPGYKPPFRILPYGVRRTLGLKEGTALRRLARLLPPHFALGRSRQHQGL 455

Query: 1505 AMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLS 1326
            A AM KLWE+SSIA IALKRGVQLTTSERMAE+IKKLTGGT+++ NKD++VFYRGK+FL+
Sbjct: 456  AAAMVKLWEKSSIAKIALKRGVQLTTSERMAEEIKKLTGGTILSSNKDYLVFYRGKDFLA 515

Query: 1325 PDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGK 1146
            P+VTEALLERE LAK LQDEEE+ARL+ASSS++S+FE   +PGTAGTL ETLEADARWG 
Sbjct: 516  PEVTEALLERETLAKTLQDEEEQARLRASSSVVSNFEIADEPGTAGTLGETLEADARWGN 575

Query: 1145 RLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDP 966
            RLD+++  KMMRAAE ARHADLVRKL+ +L LAER+LMKAE  LAKVE  L+PAE + DP
Sbjct: 576  RLDEDHMEKMMRAAEMARHADLVRKLERRLSLAERRLMKAEKALAKVEESLKPAEHTVDP 635

Query: 965  ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVK 786
            ESIT+EERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKVI+  + F Q K
Sbjct: 636  ESITEEERFMFRKLGLRMKAFLLLGRRGVFAGTVENMHLHWKYRELVKVIVKTKTFEQAK 695

Query: 785  NIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQR 606
             IAL+LE+ESGGVLVSVDKVSKGFAIIVYRGKDY+RP TLRPKNLLTKRKALARSIELQR
Sbjct: 696  YIALSLESESGGVLVSVDKVSKGFAIIVYRGKDYERPSTLRPKNLLTKRKALARSIELQR 755

Query: 605  HEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYL 426
            HEAL +HISNLQ++V+ L+SEL QM++VKD+GDEELY KL+SAY +          EAYL
Sbjct: 756  HEALSRHISNLQKRVEQLRSELVQMDNVKDQGDEELYTKLDSAYSTEDEDTEDDDDEAYL 815

Query: 425  ETCHSG-ADNEDHYGNISS 372
             T ++    + D YG + +
Sbjct: 816  HTFNTAVVIDGDEYGRVEN 834


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score =  990 bits (2560), Expect = 0.0
 Identities = 544/896 (60%), Positives = 653/896 (72%), Gaps = 13/896 (1%)
 Frame = -1

Query: 2918 QIHPT--AFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            Q +PT  +F+DSF ++       RLQF RY  SN  + H       TI+S      NPQ+
Sbjct: 8    QFYPTTTSFLDSFHST-------RLQFFRYGSSNRFRTHSSYVARNTIASN---STNPQR 57

Query: 2744 KSNLVAENRKNGPLETPISQTPSNG-SFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXX 2568
            KSN+V  N       TP+SQ  S G S   GNW+DKW+G   ++ PK  + V++YRN   
Sbjct: 58   KSNIVFTN-------TPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRNSET 110

Query: 2567 XXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMIERNERVPER----GSVEDIFYVEEG 2400
                             M++IVEKLK+FGY+DD+ E  E V ER    GS+EDIFY+EEG
Sbjct: 111  VSRSDGGSGGGST----MEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEG 166

Query: 2399 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTL 2220
            +LPN +GGF  +SPLGVEN  +G +G   FPWE+  +   +VR      +S+TS+AELTL
Sbjct: 167  ILPNPQGGFSLDSPLGVENKGDG-NGEVRFPWERPKVEEGSVRI-----KSRTSLAELTL 220

Query: 2219 PDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLH 2040
            P+SELRRLR+L +  K++ KIGG GVT+A+VD I EKWK SE+V+LKCEG   LNM+R+H
Sbjct: 221  PESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIH 280

Query: 2039 EILERKTGGLVIWRSGTSVSLYRGVGYELPSA--QSVKKKSQLVPKK----NHDSFSIAT 1878
            EILERKTGGLVIWRSGTSVSLYRGV YE+P    + V KK++           +SF+I++
Sbjct: 281  EILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISS 340

Query: 1877 EKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWP 1698
             K +G++    S+  + A+ A+L  T  E K+  S  E+KYE EIDKLLDGLGPRYTDWP
Sbjct: 341  NKTSGNAPAVGSNQNVHASQATLNITDGENKDTES--EVKYEDEIDKLLDGLGPRYTDWP 398

Query: 1697 GSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQ 1518
            G  PLP+DADLLPG + GY+ PFRILPYGVR ++G KE T+LRRLARVLPPHFALGRSRQ
Sbjct: 399  GCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQ 458

Query: 1517 HQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGK 1338
             +GLAMAM KLWERSSIA +ALKRGVQLTTSERMAEDIKKLTGG L++RNKDF+VFYRGK
Sbjct: 459  LEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGK 518

Query: 1337 NFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADA 1158
            NFLS DVTEALLERERLAK LQDEEE+ARL+AS+ +       +Q G+AGTL ETLEADA
Sbjct: 519  NFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADA 578

Query: 1157 RWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAER 978
            RWGKRLDD  + KM++ AE ARHA+LVRKL+ +L LAERKLMKAE+ L+KVE  L+PA R
Sbjct: 579  RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638

Query: 977  SSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNF 798
             +DPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I+ A+ F
Sbjct: 639  PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698

Query: 797  SQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSI 618
             QVK  ALALE+ESGGVLVSVDKVSKGFAI+V+RGKDYQRP TLRPKNLLTKRKALARSI
Sbjct: 699  DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758

Query: 617  ELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXX 438
            ELQR EAL  HIS LQ+ V+ L+SE++QM+ VKD GDEELY+KL+SAY +          
Sbjct: 759  ELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGD 818

Query: 437  EAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQNPVQGSDDDT 270
            EAYLET     D E    N           SI + H ETNFPYD    +QG + +T
Sbjct: 819  EAYLETYADENDGEHESDN-----------SIHNHHIETNFPYD----IQGEEFET 859


>ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Malus domestica]
          Length = 864

 Score =  990 bits (2559), Expect = 0.0
 Identities = 529/880 (60%), Positives = 644/880 (73%), Gaps = 6/880 (0%)
 Frame = -1

Query: 2918 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKS 2739
            Q++PT+  DSFQ+SLS+F+   +QF RY  S P K H F +    ISS   P+ NP +  
Sbjct: 8    QLYPTSLFDSFQSSLSKFNSAHIQFFRYGSSIPFKNHTFYTTHCIISSPLNPDPNPMR-- 65

Query: 2738 NLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXX 2559
                                   +  + +W++KW+ +   N PK P+AVLDY++      
Sbjct: 66   -----------------------NLCSSSWINKWNESHKHNRPKPPRAVLDYQSSEGGNG 102

Query: 2558 XXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMI----ERNERVPERGSVEDIFYVEEGMLP 2391
                          M++IVEKLK+FGYVDD      E   RV E+GSVEDIFYVEEGMLP
Sbjct: 103  SGNGGGST------MEKIVEKLKKFGYVDDSNDSKGEVRGRVIEKGSVEDIFYVEEGMLP 156

Query: 2390 NSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPDS 2211
            NSRG F A+SPLGVEN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP+S
Sbjct: 157  NSRGRFSADSPLGVENVF-GSDGKVXFPWEKPAEEEKQEEGSVR-RKSRTSVAELTLPES 214

Query: 2210 ELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEIL 2031
            ELRRLR+L    K + +IGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HEIL
Sbjct: 215  ELRRLRNLTFQKKHKTRIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHEIL 274

Query: 2030 ERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--EKATGDS 1857
            ERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+   +  K +  S S+ T  +K  GD 
Sbjct: 275  ERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKR---IYKKNDSSSASLPTVADKXVGDF 331

Query: 1856 IEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1677
            +E +S+  +      LE T  EKK+   +PE+KYE E+D+LLD LGPR+ DWPG  PLPV
Sbjct: 332  VEIASYXNVNTPQEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPV 391

Query: 1676 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1497
            DAD+LPG+VPGY+ PFR+LPYGVR ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 392  DADMLPGIVPGYEPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 451

Query: 1496 MAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1317
            MAKLWERS I  IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 452  MAKLWERSLIXKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 511

Query: 1316 TEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKRLD 1137
            TEALLERERLAK LQDEEE+ARL+AS+ +I + E+ +  GTAGTL ETL+ADA+WGKR+D
Sbjct: 512  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMD 571

Query: 1136 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 957
            + ++ K+M+ A+  RH++L RKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 572  NHHKKKVMQEADILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSI 631

Query: 956  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNIA 777
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK IA
Sbjct: 632  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 691

Query: 776  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 597
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 692  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 751

Query: 596  LCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETC 417
            L KHIS +Q KV  L+SE++QM++VK+ GDE LY+KL+S+YP+          + YLET 
Sbjct: 752  LLKHISVVQSKVDTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETY 810

Query: 416  HSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
             +  D ED             N S    H E+ FP++ QN
Sbjct: 811  SAENDGEDE-----------GNYSTHDPHLESIFPFNIQN 839


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  987 bits (2552), Expect = 0.0
 Identities = 541/887 (60%), Positives = 648/887 (73%), Gaps = 13/887 (1%)
 Frame = -1

Query: 2918 QIHPT--AFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQK 2745
            Q +PT  +F+DSF ++       RLQF RY  SN  + H       TI+S      NPQ+
Sbjct: 8    QFYPTTTSFLDSFHST-------RLQFFRYGSSNRFRTHSSYVTRNTIASN---STNPQR 57

Query: 2744 KSNLVAENRKNGPLETPISQTPSNG-SFPNGNWMDKWSGTQFQNLPKRPKAVLDYRNXXX 2568
            KSN+V  N       TP+SQ  S G S   GNW+DKW+G   ++ PK  + V++YRN   
Sbjct: 58   KSNIVFTN-------TPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKEXRPVMNYRNSET 110

Query: 2567 XXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMIERNERVPER----GSVEDIFYVEEG 2400
                             M++IVEKLK+FGY+DD+ E  E V ER    GS+EDIFY+EEG
Sbjct: 111  VSRSDGGSGGGST----MEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEG 166

Query: 2399 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTL 2220
            +LPN +GGF  +SPLGVEN  +G +G   FPWE+  +   +VR      +S+TS+AELTL
Sbjct: 167  ILPNPQGGFSLDSPLGVENKGDG-NGEVRFPWERPKVEEGSVRI-----KSRTSLAELTL 220

Query: 2219 PDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLH 2040
            P+SELRRLR+L +  K++ KIGG GVT+A+VD I EKWK SE+V+LKCEG   LNM+R+H
Sbjct: 221  PESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIH 280

Query: 2039 EILERKTGGLVIWRSGTSVSLYRGVGYELPSA--QSVKKKSQLVPKK----NHDSFSIAT 1878
            EILERKTGGLVIWRSGTSVSLYRGV YE+P    + V KK++           +SF+I++
Sbjct: 281  EILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISS 340

Query: 1877 EKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWP 1698
             K +G++    S+  + A+ A+L  T  E K+  S  E+KYE EIDKLLDGLGPRYTDWP
Sbjct: 341  NKTSGNAPAVGSNQNVHASQATLXITDGENKDTES--EVKYEDEIDKLLDGLGPRYTDWP 398

Query: 1697 GSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQ 1518
               PLP+DADLLPG + GY+ PFRILPYGVR ++G KE T+LRRLARVLPPHFALGRSRQ
Sbjct: 399  XCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQ 458

Query: 1517 HQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGK 1338
             +GLAMAM KLWERSSIA +ALKRGVQLTTSERMAEDIKKLTGG L++RNKDF+VFYRGK
Sbjct: 459  LEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGK 518

Query: 1337 NFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADA 1158
            NFLS DVTEALLERERLAK LQDEEE+ARL+AS+ +       +Q G+AGTL ETLEADA
Sbjct: 519  NFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADA 578

Query: 1157 RWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAER 978
            RWGKRLDD  + KM++ AE ARHA+LVRKL+ +L LAERKLMKAE+ L+KVE  L+PA R
Sbjct: 579  RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638

Query: 977  SSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNF 798
             +DPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I+ A+ F
Sbjct: 639  PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698

Query: 797  SQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSI 618
             QVK  ALALE+ESGGVLVSVDKVSKGFAI+V+RGKDYQRP TLRPKNLLTKRKALARSI
Sbjct: 699  DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758

Query: 617  ELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXX 438
            ELQR EAL  HIS LQ+ V+ L+SE++QM+ VKD GDEELY+KL+SAY +          
Sbjct: 759  ELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGD 818

Query: 437  EAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
            EAYLET     D E    N           SI + H ETNFPYD Q+
Sbjct: 819  EAYLETYADENDGEHESDN-----------SIHNHHIETNFPYDIQD 854


>ref|XP_010917579.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Elaeis guineensis]
          Length = 883

 Score =  971 bits (2511), Expect = 0.0
 Identities = 528/848 (62%), Positives = 620/848 (73%), Gaps = 4/848 (0%)
 Frame = -1

Query: 2933 VSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAPFPER 2757
            ++ T Q+HP    DS  ASLSR    RL   R S S  P K   FS+N      AP  + 
Sbjct: 3    LAPTLQLHPAPLFDSLHASLSRLQSPRLLLFRCSSSTAPPKNLRFSAN-SVHHQAPAAKS 61

Query: 2756 NPQKKSNLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYRN 2577
            +P   S+       + P   P     S  +     W+  W  ++F   PKRP+AVLDYR 
Sbjct: 62   SPFSGSS-------HRPRRLPAEDLSSRRT-----WIKSWHPSRFLTRPKRPRAVLDYRE 109

Query: 2576 XXXXXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDDMIERNER-VPERGSVEDIFYVEEG 2400
                                M++IVEKLK+FGY+DD  ER E  +PE+GSVEDIFY E+G
Sbjct: 110  GISSDDDVVGTSRSTGSST-MEKIVEKLKKFGYIDDSDERKESPLPEKGSVEDIFYAEDG 168

Query: 2399 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVR--NSVRMRRSKTSVAEL 2226
            +LP+S GG   +    V            FPWEKR  N E V   +S R RRSKTS+AEL
Sbjct: 169  ILPDSSGGLSLDLNKEVR-----------FPWEKRLENKEGVGGGSSARKRRSKTSLAEL 217

Query: 2225 TLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKR 2046
            TLP+ ELRRLRH+AV +KS+ KI GAGVTK IVD IHE+WK +EVVRLKCEG P LNMKR
Sbjct: 218  TLPEGELRRLRHMAVRIKSKTKIKGAGVTKEIVDLIHEQWKTTEVVRLKCEGAPALNMKR 277

Query: 2045 LHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKAT 1866
             HEILERKTGGLVIWRSGTS+SLYRGVGYE+   +  K++ Q V +   D+F+  T   T
Sbjct: 278  THEILERKTGGLVIWRSGTSISLYRGVGYEILLPE--KRQYQNVQRSAVDTFNKGTYHPT 335

Query: 1865 GDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGP 1686
            G S        +Q        + E+KK+     EIKYE EIDKLLDGLGPRYTDWPGS P
Sbjct: 336  GVSTANGRGNNVQDLQEDSTASLEKKKDTEPDAEIKYEREIDKLLDGLGPRYTDWPGSDP 395

Query: 1685 LPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGL 1506
            LPVDADLLP +VPGYK PFRILPYGVR T+G KE T+LRRLAR+LPPHFALGRSRQHQGL
Sbjct: 396  LPVDADLLPSLVPGYKPPFRILPYGVRRTLGLKEGTALRRLARLLPPHFALGRSRQHQGL 455

Query: 1505 AMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLS 1326
            A AM KLWE+SSIA IALKRGVQLT SERMAE+IKKLTGG +++ NKD++VFYRGK+FL+
Sbjct: 456  AAAMVKLWEKSSIAKIALKRGVQLTMSERMAEEIKKLTGGMILSSNKDYLVFYRGKDFLA 515

Query: 1325 PDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGK 1146
            P+VTEALLERERLAK LQD+EE+ARL+ASSS++S+FE   +PGTAGTL ETLEADARWG 
Sbjct: 516  PEVTEALLERERLAKTLQDKEEQARLRASSSVVSNFEIADEPGTAGTLGETLEADARWGN 575

Query: 1145 RLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDP 966
            RLD ++  KMMRAAE ARHADLVRKL+ +L +AER+LMKAE  L+KVE  L+PAE ++DP
Sbjct: 576  RLDQDHMEKMMRAAEMARHADLVRKLERRLSIAERRLMKAEKALSKVEESLKPAEHAADP 635

Query: 965  ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVK 786
            ESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKVI+  + F Q K
Sbjct: 636  ESITDEERFMFRKLGLRMKAFLLLGRRGVFAGTVENMHLHWKYRELVKVIVKTKTFEQAK 695

Query: 785  NIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQR 606
            +IAL+LE+ESGGVLVSVDKVSKGFAIIVYRGKDYQRP  LRPKNLLTKRKALARSIELQR
Sbjct: 696  HIALSLESESGGVLVSVDKVSKGFAIIVYRGKDYQRPPALRPKNLLTKRKALARSIELQR 755

Query: 605  HEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYL 426
            HEA+  HISNLQ++V+ L+SEL QM++VKD+GDE+LY KL+SAY +          EAYL
Sbjct: 756  HEAISHHISNLQKRVEQLRSELVQMDNVKDQGDEDLYAKLDSAYSTEDEDTEDEDDEAYL 815

Query: 425  ETCHSGAD 402
             T ++  D
Sbjct: 816  HTFNTAVD 823


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
            gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
            1 [Theobroma cacao]
          Length = 876

 Score =  966 bits (2496), Expect = 0.0
 Identities = 528/894 (59%), Positives = 637/894 (71%), Gaps = 18/894 (2%)
 Frame = -1

Query: 2924 TCQIHP-----TAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAPFP 2763
            T Q HP     + F+DSFQ  LS+F G  L F  Y  SN P K     +   T++S    
Sbjct: 6    TRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLF 65

Query: 2762 ERNPQKKSNLVAENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDY 2583
             + P+ K+       K  P + P  ++         NW+D W+ T     PK PK V +Y
Sbjct: 66   HQYPKSKT-------KAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFNY 109

Query: 2582 RNXXXXXXXXXXXXXXXXXXXT--MDRIVEKLKRFGYVDDMIERNE-------RVPERGS 2430
            R                    +  M++IVEKLK+FGY+ +  E+ E       RV ERGS
Sbjct: 110  RKKGDVWSLSYSQSDNNGRSSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKRVIERGS 169

Query: 2429 VEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRR 2250
            +EDIFYVEEGMLPN+RGGF  ESPLG+EN   G DG   FPWEKR  + E    + R R 
Sbjct: 170  IEDIFYVEEGMLPNNRGGFSKESPLGMENVF-GSDGEVRFPWEKRKEDEEEGGWTAR-RD 227

Query: 2249 SKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEG 2070
            SKTS+AELTLP+SELRRLR+L    KS+++I GAGVT+ +VD IHEKWK  E+VRLK EG
Sbjct: 228  SKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVRLKIEG 287

Query: 2069 PPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSF 1890
             P LNMKR+HEILERKTGGLVIWRSGTSVSLYRGV YE+PS    K+    + K+N ++F
Sbjct: 288  APALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKR----IYKRN-ETF 342

Query: 1889 SIATEKA---TGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLG 1719
            + A       T D     SH  + +  A+ E  AE  K+  S+PEI+YE E+DKLL+GLG
Sbjct: 343  TYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKLLEGLG 402

Query: 1718 PRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHF 1539
            PRYTDWPG  PLPVDADLLPG+V GY+ PFR+LPYGVR ++G KE TSLRRLARVLPPHF
Sbjct: 403  PRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARVLPPHF 462

Query: 1538 ALGRSRQHQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDF 1359
            A+GRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERMAEDIKKLTGG L++RNKDF
Sbjct: 463  AIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLSRNKDF 522

Query: 1358 IVFYRGKNFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLE 1179
            +VFYRGKNFLS DV EAL+ERERLAK LQDEEE+ARL+AS+ L+   E  +Q G AGTL 
Sbjct: 523  LVFYRGKNFLSADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGAAGTLG 582

Query: 1178 ETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEA 999
            ETL+ADARWGKRLD+ ++ K+M+ AE  RHA+LVRKLD  L  A+RKL+KAE  L KVE 
Sbjct: 583  ETLDADARWGKRLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERALTKVED 642

Query: 998  LLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKV 819
             L+PA+R +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK+
Sbjct: 643  YLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKI 702

Query: 818  IINARNFSQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKR 639
            I+ A+ F QVK +ALALEAESGGVLVSVD++SKG+AIIVYRGKDYQRP T+RPKNLLTKR
Sbjct: 703  IMKAKTFDQVKKVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKNLLTKR 762

Query: 638  KALARSIELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPSAXX 459
            +ALARSIELQR EAL KH+S LQ KV  ++SE+DQM S++++GDEE Y++L+S+YP+   
Sbjct: 763  RALARSIELQRREALVKHVSALQAKVDKIRSEIDQMHSMEEQGDEEFYDRLDSSYPTDDD 822

Query: 458  XXXXXXXEAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
                   EAYLET  S  D E+    +           I + H ET FP+  Q+
Sbjct: 823  DTEEEGDEAYLETYESENDAEEENDEL-----------IHNLHLETKFPFHDQH 865


>ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Gossypium raimondii]
            gi|763754573|gb|KJB21904.1| hypothetical protein
            B456_004G020400 [Gossypium raimondii]
          Length = 853

 Score =  959 bits (2480), Expect = 0.0
 Identities = 520/882 (58%), Positives = 629/882 (71%), Gaps = 12/882 (1%)
 Frame = -1

Query: 2906 TAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAPFPERNPQKKSNLV 2730
            T F+DSFQ SLSRF G  L F RYS S+ P K  +F ++   I+S      NP+ K+   
Sbjct: 12   TTFLDSFQTSLSRFHGLPLPFFRYSSSHFPLKTLNFCASKHAITSNAQIHPNPESKTK-- 69

Query: 2729 AENRKNGPLETPISQTPSNGSFP--NGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXXX 2556
                                +FP  + NW+D W+ T  +N PK PK V +YR        
Sbjct: 70   --------------------AFPTFSSNWLDNWNKTHKRNGPKPPKTVFNYRKDGNLWSL 109

Query: 2555 XXXXXXXXXXXXT--MDRIVEKLKRFGYVDDMIERNERVP----ERGSVEDIFYVEEGML 2394
                        +  M++IVEKLK+FGY+ +  E+ E  P    ERGS+ED+FYVEEGML
Sbjct: 110  SYSKSDNNGSGSSSTMEKIVEKLKKFGYIGEENEQKEEQPRKVIERGSIEDMFYVEEGML 169

Query: 2393 PNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPD 2214
            PN+RGGF  ESPLG+E ++ G DG  +FPWEKR    E  + + R   +K S+AELTLP+
Sbjct: 170  PNTRGGFSKESPLGME-TEFGSDGEIMFPWEKRKEEQEEGKWTAR-GDNKASLAELTLPE 227

Query: 2213 SELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEI 2034
            SELRRLR+L    KS+M+I GAGVT+ +VD IHEKWK  E+VRLK EG P LNMKR+HEI
Sbjct: 228  SELRRLRNLTFRTKSKMRIKGAGVTQEVVDTIHEKWKTMEIVRLKVEGAPALNMKRMHEI 287

Query: 2033 LERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFS--IATEKATGD 1860
            LERKTGGLVIWRSGTS+SLYRGV YE+PS   V    Q+  +    ++S  + ++K T D
Sbjct: 288  LERKTGGLVIWRSGTSISLYRGVSYEVPS---VHLNKQIYKRNEMSTYSSPLVSDK-TED 343

Query: 1859 SIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLP 1680
                  H  +    ++ E   EE K    +PEIKYE E+DKLL+GLGPRY DWPG  PLP
Sbjct: 344  PSGLVPHKDVAPPQSNSETATEEHKNTEPLPEIKYEDEVDKLLEGLGPRYADWPGCDPLP 403

Query: 1679 VDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAM 1500
            VDADLLPG+VPGY+ PFR+LPYGVR ++G KE TSLRRLARVLPPHFA+GRSRQ QGLA+
Sbjct: 404  VDADLLPGIVPGYQPPFRVLPYGVRSSLGVKEATSLRRLARVLPPHFAIGRSRQLQGLAV 463

Query: 1499 AMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPD 1320
            AM KLWE+SSIA IALKRGVQLTTSERMAED+KKLTGG L++RNKDF+VFYRGKNFLS D
Sbjct: 464  AMTKLWEKSSIAKIALKRGVQLTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSAD 523

Query: 1319 VTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKRL 1140
            V EALLERERLAK LQD EE+ARL+AS+      E  +Q G AGTL ETL+ADARWGKRL
Sbjct: 524  VAEALLERERLAKSLQDVEEQARLRASALFAQSTEVAEQSGAAGTLGETLDADARWGKRL 583

Query: 1139 DDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPES 960
            DD ++ K+++ AE  RHA+LVRKL+  L  AERKL+KAE  L+KVE  L+PA+R +DPES
Sbjct: 584  DDHHKEKVLKEAEILRHANLVRKLEKNLAFAERKLLKAERALSKVEDYLKPADRQADPES 643

Query: 959  ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNI 780
            ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK+I+ A+NF QVK +
Sbjct: 644  ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKNFDQVKKV 703

Query: 779  ALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHE 600
            A+ALEAESGGVLVSVDK+SKG+AIIVYRGKDY+RP T+RPKNLLTKR+ALARSIELQR E
Sbjct: 704  AIALEAESGGVLVSVDKISKGYAIIVYRGKDYERPSTIRPKNLLTKRRALARSIELQRRE 763

Query: 599  ALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPS-AXXXXXXXXXEAYLE 423
            AL KHIS LQ KV+ L+SE+DQM S+   GDEE Y++L+S+YPS           EAYL 
Sbjct: 764  ALVKHISALQAKVEKLRSEIDQMHSMDARGDEEFYDRLDSSYPSDDDDDTEEEGDEAYLG 823

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
            T     D E+   ++               H ETNFP+ +Q+
Sbjct: 824  TYDGENDGEEENDDL---------------HLETNFPFHNQH 850


>gb|KDO45877.1| hypothetical protein CISIN_1g002316mg [Citrus sinensis]
          Length = 936

 Score =  959 bits (2478), Expect = 0.0
 Identities = 524/909 (57%), Positives = 632/909 (69%), Gaps = 39/909 (4%)
 Frame = -1

Query: 2906 TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKSNLVA 2727
            TA  DSFQ+S S+F G    F R  HS P K   F  N    SS    E+NP +K+   +
Sbjct: 13   TAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQN---FSSNSAHEKNPPRKTCSFS 69

Query: 2726 ENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYR---------NX 2574
             N       +   +  +     + +W+ KW+     N  K P+A ++YR           
Sbjct: 70   TNN----FFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGF 125

Query: 2573 XXXXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDD------------MIERNERVPERGS 2430
                              TM +IVEKLK+FGYV D              +  ERV E+GS
Sbjct: 126  ARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGS 185

Query: 2429 VEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRR 2250
            +EDIFYVEEG+LPN+RGGF  ESPLG+   + G DG   FPWEKR       R  V+ R 
Sbjct: 186  IEDIFYVEEGLLPNARGGFSKESPLGL-GEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRS 244

Query: 2249 SKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEG 2070
            S+TS+AELTLP+SELRRLR+L    KS+ +I GAG+T+A+VD IHEKWK SE+VRLK EG
Sbjct: 245  SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304

Query: 2069 PPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKK-----------KS 1923
             P LNMKR+HEILERKTGGLVIWRSGT+VSLYRGV YE+PS Q  K+            S
Sbjct: 305  APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVS 364

Query: 1922 QLVPKKNH-------DSFSIATEKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPE 1764
            Q   K+ H       +S S A +K   D     S+  + AT  +LE TA E++E + + E
Sbjct: 365  QATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLE-TASEEQETDFVRE 423

Query: 1763 IKYETEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKE 1584
            +KYE E++KLLDGLGPRYTDWPG  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+  KE
Sbjct: 424  VKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKE 483

Query: 1583 MTSLRRLARVLPPHFALGRSRQHQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDI 1404
             T+L+RLARVLPPHFALGRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERM EDI
Sbjct: 484  ATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI 543

Query: 1403 KKLTGGTLITRNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEERARLQASSSLIS 1224
            KKLTGGTL++RNKDF+VFYRGKNFLSPDVTEAL ERERLAK LQDEEE+ARL+AS+ ++ 
Sbjct: 544  KKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLP 603

Query: 1223 DFERIKQPGTAGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAE 1044
              E I++ GTAGTL+ETL+A++RWGKRLDD ++  ++R AE  RHA LV+KL+ KL  AE
Sbjct: 604  SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663

Query: 1043 RKLMKAESVLAKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 864
            RKL++AE  L+KVE  L+PAER +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV
Sbjct: 664  RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 723

Query: 863  ENMHLHWKYRELVKVIINARNFSQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDY 684
            ENMHLHWKYRELVK+I+  + F Q K IALALEAESGGVLVSVDK+SKG+A++VYRGKDY
Sbjct: 724  ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783

Query: 683  QRPRTLRPKNLLTKRKALARSIELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDE 504
            QRP TLRPKNLLTKRKALARSIELQR EAL KH++ L+     L+SE++QM SVK  GDE
Sbjct: 784  QRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDE 843

Query: 503  ELYEKLESAYPSAXXXXXXXXXEAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPE 324
            +LY+KL+SAY +          EAYLE    G DNED   N           S  +   E
Sbjct: 844  QLYDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN-----------STHNLEME 892

Query: 323  TNFPYDHQN 297
            ++FPY  Q+
Sbjct: 893  SDFPYHAQD 901


>gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 853

 Score =  957 bits (2474), Expect = 0.0
 Identities = 519/882 (58%), Positives = 626/882 (70%), Gaps = 12/882 (1%)
 Frame = -1

Query: 2906 TAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAPFPERNPQKKSNLV 2730
            T F+DSFQ SLSRF G    F RYS  + P K  +F +N  TI+S      NP+ K+   
Sbjct: 12   TTFLDSFQTSLSRFHGLPHPFFRYSSFHFPLKTLNFCANNHTITSNSQIHPNPESKTK-- 69

Query: 2729 AENRKNGPLETPISQTPSNGSFP--NGNWMDKWSGTQFQNLPKRPKAVLDYRNXXXXXXX 2556
                                 FP  + NW+D W+ T  +N PK PK V +YR        
Sbjct: 70   --------------------GFPTFSSNWLDNWNKTHKRNGPKPPKTVFNYRKDGNLWSL 109

Query: 2555 XXXXXXXXXXXXT--MDRIVEKLKRFGYVDDMIERNERVP----ERGSVEDIFYVEEGML 2394
                        +  M++IVEKLK+FGY+ +  E+ E  P    ERGS+ED+FYVEEGML
Sbjct: 110  SYSKSDNNGSGSSSTMEKIVEKLKKFGYIGEENEQKEEQPRKVIERGSIEDMFYVEEGML 169

Query: 2393 PNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPD 2214
            PN+RGGF  ESPLG+E ++ G DG  +FPWEKR    E  + + R   +K S+AELTLP+
Sbjct: 170  PNTRGGFSKESPLGME-TEFGSDGEIMFPWEKRKEEQEEGKWTAR-GDNKASLAELTLPE 227

Query: 2213 SELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEI 2034
            SELRRLR+L    KS+M+I GAGVT+ +VD IHEKWK  E+VRLK EG P LNMKR+HEI
Sbjct: 228  SELRRLRNLTFRTKSKMRIKGAGVTQEVVDTIHEKWKTMEIVRLKVEGAPALNMKRMHEI 287

Query: 2033 LERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFS--IATEKATGD 1860
            LERKTGGLVIWRSGTS+SLYRGV YE+PS   V    Q+  +    ++S  + ++K T D
Sbjct: 288  LERKTGGLVIWRSGTSISLYRGVSYEVPS---VHLNKQIYKRNEMSTYSSPLVSDK-TED 343

Query: 1859 SIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLP 1680
              +   H  +     + E   EE K    +PEIKYE E+DKLL+GLGPRY DWPG  PLP
Sbjct: 344  PSDLVPHKDVAPPQTNSETATEEHKNTEPLPEIKYEDEVDKLLEGLGPRYADWPGCDPLP 403

Query: 1679 VDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAM 1500
            VDADLLPG+VPGY+ PFR+LPYGVR ++G KE TSLRRLARVLPPHFALGRSRQ QGLA+
Sbjct: 404  VDADLLPGIVPGYQPPFRVLPYGVRSSLGVKEATSLRRLARVLPPHFALGRSRQLQGLAV 463

Query: 1499 AMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPD 1320
            AM KLWE+SSIA IALKRGVQLTTSERMAED+KKLTGG L++RNKDF+VFYRGKNFLS D
Sbjct: 464  AMTKLWEKSSIAKIALKRGVQLTTSERMAEDLKKLTGGILLSRNKDFLVFYRGKNFLSAD 523

Query: 1319 VTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEETLEADARWGKRL 1140
            V EALLERERLAK LQD EE+ARL+AS+      E  +Q G AGTL ETL+ADARWGKRL
Sbjct: 524  VAEALLERERLAKSLQDVEEQARLRASALFAQSTEVAEQSGAAGTLGETLDADARWGKRL 583

Query: 1139 DDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPES 960
            DD ++ K+++ AE  RHA+LVRKL+  L  AERKL+KAE  L+KVE  L+PA+R +DPES
Sbjct: 584  DDHHKEKVLKEAEILRHANLVRKLEKNLAFAERKLLKAEQALSKVEDYLKPADRQADPES 643

Query: 959  ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNI 780
            ITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK+I+ A+NF QVK +
Sbjct: 644  ITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIMKAKNFDQVKKV 703

Query: 779  ALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHE 600
            A+ALEAESGGVLVSVDK+SKG+AIIVYRG DY+RP T+RPKNLLTKR+ALARSIELQR E
Sbjct: 704  AIALEAESGGVLVSVDKISKGYAIIVYRGNDYERPSTIRPKNLLTKRRALARSIELQRRE 763

Query: 599  ALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAYPS-AXXXXXXXXXEAYLE 423
            AL KHIS LQ KV+ ++SE+DQM S+   GDEE Y++L+S+YPS           EAYL 
Sbjct: 764  ALVKHISALQAKVEKIRSEIDQMHSMDARGDEEFYDRLDSSYPSDDDDDTEEEGDEAYLG 823

Query: 422  TCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQN 297
            T     D E+   ++               H ETNFP+ +Q+
Sbjct: 824  TYDGENDGEEENDDL---------------HLETNFPFHNQH 850


>ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 886

 Score =  956 bits (2470), Expect = 0.0
 Identities = 526/893 (58%), Positives = 635/893 (71%), Gaps = 15/893 (1%)
 Frame = -1

Query: 2933 VSSTCQIHP--TAFIDSFQASLSRFS-GYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFP 2763
            V  + Q +P  +  +D+FQ+S+S+F     LQF RYS S P K   F     T S    P
Sbjct: 3    VMPSYQFYPKNSFLMDTFQSSVSKFHVRTTLQFFRYSSSLPVKNRFFCVIDETSSRNSVP 62

Query: 2762 ERNPQKKSNLVAENRKNGPL---ETPISQTP-SNGSFPNGNWMDKWSGTQFQNLPKRPKA 2595
            + NP K+ NL+  N+K G     E PISQ+  S       +W+  W  T   N  +RP+A
Sbjct: 63   QENPHKRFNLLPRNKKGGSSFSGEEPISQSSNSRVILSRSSWLANWDVTSKPNGGRRPQA 122

Query: 2594 VLDYRNXXXXXXXXXXXXXXXXXXXT-MDRIVEKLKRFGYVDDMIERNER---VPERGSV 2427
            V++YRN                   + M RIVEKLK+FGY+DD   +NE    V E+GS+
Sbjct: 123  VVNYRNRGDVSSSDSEEGTSTSSGGSTMQRIVEKLKKFGYIDDDSNKNENMGGVIEKGSI 182

Query: 2426 EDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRS 2247
            EDIFYVEEG+LPN+RGGF  E P G EN    G+G   FPWEK  L  +  + S+  RRS
Sbjct: 183  EDIFYVEEGLLPNTRGGFSEEFPFGDENGVARGNGEVRFPWEKDALGEQ--KRSLDSRRS 240

Query: 2246 KTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGP 2067
            + S+AELTLP+ ELRRL +LA+ +K++ +IGGAGVT+ +V+ I EKWK SEVVRLK EGP
Sbjct: 241  R-SLAELTLPEPELRRLTNLALRIKNKTRIGGAGVTQQVVETIREKWKTSEVVRLKIEGP 299

Query: 2066 PTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKK---SQLVPKKNHD 1896
            P LNM+R+HEILERKTGGLVIWRSGTS++LYRGV YE  SA  +KK+      +P K+H 
Sbjct: 300  PALNMRRMHEILERKTGGLVIWRSGTSLALYRGVTYE-DSATKLKKRIFRRNELPHKSHS 358

Query: 1895 SFSIATEKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGP 1716
                AT+K   DS E       +           + ++P +  E++YE E+DKLLD LGP
Sbjct: 359  ----ATDKTGQDSSESGVLPDREVPSPESVSLNPDDRDPETSSEVRYEDEVDKLLDSLGP 414

Query: 1715 RYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFA 1536
            RYTDWPG  PLPVDADLLPG VPGY+ PFR+LPYGVR T+G KE T+LRRLARVLPPHFA
Sbjct: 415  RYTDWPGDDPLPVDADLLPGTVPGYRPPFRLLPYGVRSTLGMKEATALRRLARVLPPHFA 474

Query: 1535 LGRSRQHQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFI 1356
            LGRSRQHQGLA AM KLWERSSIA IALKRGVQLTTSERMAED+K+LTGG L++RNKDF+
Sbjct: 475  LGRSRQHQGLAAAMIKLWERSSIAKIALKRGVQLTTSERMAEDLKRLTGGMLLSRNKDFL 534

Query: 1355 VFYRGKNFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDFERIKQPGTAGTLEE 1176
            V+YRGK+FLSPDV EALLE+ERLAK LQDEEE+ARL+A + +    E   + GTAGTL+E
Sbjct: 535  VYYRGKDFLSPDVAEALLEKERLAKALQDEEEQARLRALALIAPAVEETDESGTAGTLKE 594

Query: 1175 TLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEAL 996
            TL+AD RWGKRLDD ++ K+MR AE  RHA+LVRKL+ KL  AERKL KAE  L+KVE  
Sbjct: 595  TLDADTRWGKRLDDVHKEKVMREAEVLRHANLVRKLENKLAFAERKLSKAERALSKVEES 654

Query: 995  LQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVI 816
            L PA+R+ DPES+TDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I
Sbjct: 655  LYPADRAQDPESLTDEERFMFRKLGLRMKAFLLLGRRGVFGGTVENMHLHWKYRELVKII 714

Query: 815  INARNFSQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRK 636
            + A+N  +VKNIALALEAESGGVLVSVDKVSKG+AIIV+RG+DY+RP  LRPKNLLTKRK
Sbjct: 715  VKAQNIEEVKNIALALEAESGGVLVSVDKVSKGYAIIVFRGRDYKRPSLLRPKNLLTKRK 774

Query: 635  ALARSIELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEELYEKLESAY-PSAXX 459
            ALARSIELQR EAL  H+S LQ +V  L+SE++QM +VK++GDEELY KL+SAY      
Sbjct: 775  ALARSIELQRREALLNHMSTLQTRVNQLRSEIEQMAAVKEQGDEELYNKLDSAYLTEDED 834

Query: 458  XXXXXXXEAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETNFPYDHQ 300
                   EAYL T  S  D  D            +N S+ + +  TNFPYD Q
Sbjct: 835  SEEEGDEEAYLGTYDSDNDMVDE-----------NNDSVHNTYLGTNFPYDFQ 876


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Citrus sinensis]
          Length = 933

 Score =  955 bits (2469), Expect = 0.0
 Identities = 524/907 (57%), Positives = 632/907 (69%), Gaps = 37/907 (4%)
 Frame = -1

Query: 2906 TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKSNLVA 2727
            TA  DSFQ+S S+F G    F R  HS P K   F  N    SS    E+NP +K+   +
Sbjct: 13   TAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQN---FSSNSAHEKNPPRKTCSFS 69

Query: 2726 ENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYR---------NX 2574
             N       +   +  +     + +W+ KW+     N  K P+A ++YR           
Sbjct: 70   TNN----FFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGF 125

Query: 2573 XXXXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDD----------MIERNERVPERGSVE 2424
                              TM +IVEKLK+FGYV D            +  ERV E+GS+E
Sbjct: 126  ARTDSDGNGVGGVDDGGNTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIE 185

Query: 2423 DIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSK 2244
            DIFYVEEG+LPN+RGGF  ESPLG+   + G DG   FPWEKR       R  V+ R S+
Sbjct: 186  DIFYVEEGLLPNARGGFSKESPLGL-GEEVGSDGEVKFPWEKRKEEVAEGRWLVK-RSSR 243

Query: 2243 TSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPP 2064
            TS+AELTLP+SELRRLR+L    KS+ +I GAG+T+A+VD IHEKWK SE+VRLK EG P
Sbjct: 244  TSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAP 303

Query: 2063 TLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKK-----------KSQL 1917
             LNMKR+HEILERKTGGLVIWRSGT+VSLYRGV YE+PS Q  K+            SQ 
Sbjct: 304  ALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQA 363

Query: 1916 VPKKNH-------DSFSIATEKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIK 1758
              K+ H       +S S A +K   D     S+  + AT  +LE TA E++E + + E+K
Sbjct: 364  TDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLE-TASEEQETDFVREVK 422

Query: 1757 YETEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMT 1578
            YE E++KLLDGLGPRYTDWPG  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+  KE T
Sbjct: 423  YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 482

Query: 1577 SLRRLARVLPPHFALGRSRQHQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKK 1398
            +L+RLARVLPPHFALGRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERM EDIKK
Sbjct: 483  NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 542

Query: 1397 LTGGTLITRNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDF 1218
            LTGGTL++RNKDF+VFYRGKNFLSPDVTEAL ERERLAK LQDEEE+ARL+AS+ ++   
Sbjct: 543  LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 602

Query: 1217 ERIKQPGTAGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERK 1038
            E I++ GTAGTL+ETL+A++RWGKRLDD ++  ++R AE  RHA LV+KL+ KL  AERK
Sbjct: 603  ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 662

Query: 1037 LMKAESVLAKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 858
            L++AE  L+KVE  L+PAER +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN
Sbjct: 663  LLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 722

Query: 857  MHLHWKYRELVKVIINARNFSQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQR 678
            MHLHWKYRELVK+I+  + F Q K IALALEAESGGVLVSVDK+SKG+A++VYRGKDYQR
Sbjct: 723  MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 782

Query: 677  PRTLRPKNLLTKRKALARSIELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEEL 498
            P TLRPKNLLTKRKALARSIELQR EAL KH++ L+     L+SE++QM SVK  GDE+L
Sbjct: 783  PSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQL 842

Query: 497  YEKLESAYPSAXXXXXXXXXEAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETN 318
            Y+KL+SAY +          EAYLE    G DNED   N           S  +   E++
Sbjct: 843  YDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN-----------STHNLEMESD 891

Query: 317  FPYDHQN 297
            FPY  Q+
Sbjct: 892  FPYHAQD 898


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521988|gb|ESR33355.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  955 bits (2468), Expect = 0.0
 Identities = 520/907 (57%), Positives = 630/907 (69%), Gaps = 37/907 (4%)
 Frame = -1

Query: 2906 TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNPQKKSNLVA 2727
            TA  DSFQ+S S+F G    F R  HS P K H F  N    S++   +  P+K  +   
Sbjct: 13   TAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNFS--SNSAHEKNTPRKICSFST 70

Query: 2726 ENRKNGPLETPISQTPSNGSFPNGNWMDKWSGTQFQNLPKRPKAVLDYR---------NX 2574
             N       +   +  +     + +W+ KW+     N  K P+A ++YR           
Sbjct: 71   NN-----FFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGF 125

Query: 2573 XXXXXXXXXXXXXXXXXXTMDRIVEKLKRFGYVDD----------MIERNERVPERGSVE 2424
                              TM +IVEKLK+FGYV D            +  ERV E+GS+E
Sbjct: 126  ARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIE 185

Query: 2423 DIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSK 2244
            DIFYVEEG+LPN+RGGF  ESPLG+   + G DG   FPWEKR       R  V+ R S+
Sbjct: 186  DIFYVEEGLLPNARGGFSKESPLGL-GEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSR 244

Query: 2243 TSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPP 2064
            TS+AELTLP+SELRRLR+L    KS+ +I GAG+T+A+VD IHEKWK SE+VRLK EG P
Sbjct: 245  TSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAP 304

Query: 2063 TLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKK-----------KSQL 1917
             LNMKR+HEILERKTGGLVIWRSGT+VSLYRGV YE+PS Q  K+            SQ 
Sbjct: 305  ALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQA 364

Query: 1916 VPKKNH-------DSFSIATEKATGDSIEKSSHGYMQATHASLEDTAEEKKEPNSMPEIK 1758
              K+ H       +S S A +K   D     S+  +  T  +LE TA E++E + + E+K
Sbjct: 365  TDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLE-TASEEQETDFVREVK 423

Query: 1757 YETEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMT 1578
            YE E++KLLDGLGPRYTDWPG  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+  KE T
Sbjct: 424  YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 483

Query: 1577 SLRRLARVLPPHFALGRSRQHQGLAMAMAKLWERSSIAIIALKRGVQLTTSERMAEDIKK 1398
            +L+RLARVLPPHFALGRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERM EDIKK
Sbjct: 484  NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 543

Query: 1397 LTGGTLITRNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEERARLQASSSLISDF 1218
            LTGGTL++RNKDF+VFYRGKNFLSPDVTEAL ERERLAK LQDEEE+ARL+AS+ ++   
Sbjct: 544  LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 603

Query: 1217 ERIKQPGTAGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERK 1038
            E I++ GTAGTL+ETL+A++RWGKRLDD ++  ++R AE  RHA LV+KL+ KL  AERK
Sbjct: 604  ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 663

Query: 1037 LMKAESVLAKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 858
            L++AE  L+KVE  L+PAER +DPESIT+EERFMFRKLGLRMKAFLLLGRRGVFDGTVEN
Sbjct: 664  LLRAERALSKVEESLKPAERQADPESITNEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 723

Query: 857  MHLHWKYRELVKVIINARNFSQVKNIALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQR 678
            MHLHWKYRELVK+I+  + F Q K IALALEAESGGVLVSVDK+SKG+A++VYRGKDYQR
Sbjct: 724  MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 783

Query: 677  PRTLRPKNLLTKRKALARSIELQRHEALCKHISNLQQKVKNLKSELDQMESVKDEGDEEL 498
            P TLRPKNLLTKRKALARSIELQR EAL KH++ L+     L+SE++QM SVK  GDE+L
Sbjct: 784  PSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQL 843

Query: 497  YEKLESAYPSAXXXXXXXXXEAYLETCHSGADNEDHYGNISSGXXXXDNTSIRSFHPETN 318
            Y+KL+SAY +          EAYLE    G DNED   N           S  +   E++
Sbjct: 844  YDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN-----------STHNLEMESD 892

Query: 317  FPYDHQN 297
            FPY  Q+
Sbjct: 893  FPYHAQD 899