BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041467
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subc...    73   3e-11
gb|ABG65937.1| retrotransposon protein, putative, Ty3-gypsy subc...    71   8e-11
gb|AAT81704.1| putative retrotransposon protein [Oryza sativa Ja...    71   8e-11
gb|AAR00612.1| putative retrotransposon gag protein, 5'-partial ...    71   8e-11
gb|AAN04195.1| Putative retroelement [Oryza sativa Japonica Group]     71   8e-11

>gb|ABA97501.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 595

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 35/84 (41%), Positives = 55/84 (65%)
 Frame = +3

Query: 9   IPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYHLS 188
           IP+ V     ++F  L QG ++V EY+ +F+ L+R+AP  + TDE+++EKF++GLN  LS
Sbjct: 146 IPSGVVSPKKKEFRTLTQGSRSVTEYLHEFNRLARYAPEDVRTDEERQEKFLEGLNDELS 205

Query: 189 KTVMAFDGDPFDKIVNMAYKYEKK 260
             +M  D   F K+V+MA + E K
Sbjct: 206 YPLMTGDYHDFQKLVDMAIRQEDK 229


>gb|ABG65937.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1251

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/84 (40%), Positives = 55/84 (65%)
 Frame = +3

Query: 9   IPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYHLS 188
           IP+ V     ++F +L QG +TV EY+ +F+ L+R+AP  + TDE+++E+F++GLN  LS
Sbjct: 145 IPSGVVSLKKKEFRSLTQGSRTVTEYLQEFNRLARYAPEDVRTDEERQERFLEGLNDELS 204

Query: 189 KTVMAFDGDPFDKIVNMAYKYEKK 260
             +M  D   F K+V+ A + E K
Sbjct: 205 YPLMTGDYHDFQKLVDKAIRQEDK 228


>gb|AAT81704.1| putative retrotransposon protein [Oryza sativa Japonica Group]
           gi|108709812|gb|ABF97607.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 626

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/85 (41%), Positives = 56/85 (65%)
 Frame = +3

Query: 9   IPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYHLS 188
           IP  V      +F  LKQ D+TVAEY+ +F+ L+R+AP  + TDE+++EKF++GL   LS
Sbjct: 397 IPAGVVALKKREFRTLKQKDRTVAEYLHEFNRLARYAPEDVRTDEERQEKFLEGLKDELS 456

Query: 189 KTVMAFDGDPFDKIVNMAYKYEKKE 263
            T+++ D   F ++V+ A + E K+
Sbjct: 457 VTLISHDYVDFQQLVDKAIRLEDKK 481



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/84 (33%), Positives = 52/84 (61%)
 Frame = +3

Query: 3   HFIPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYH 182
           +F+P AV      +F  ++QG+ T+ EY+++F +L+R+A   ++ +E+K +KFI+GLN  
Sbjct: 131 NFMPAAVMRMKKNEFRRVRQGNTTIQEYLNRFTQLARYATGDLADEEEKIDKFIEGLNDE 190

Query: 183 LSKTVMAFDGDPFDKIVNMAYKYE 254
           L   ++  D D F  ++N   + E
Sbjct: 191 LRGPMIGQDHDSFQSLINKVVRLE 214


>gb|AAR00612.1| putative retrotransposon gag protein, 5'-partial [Oryza sativa
           Japonica Group]
          Length = 294

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/85 (41%), Positives = 56/85 (65%)
 Frame = +3

Query: 9   IPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYHLS 188
           IP  V      +F  LKQ D+TVAEY+ +F+ L+R+AP  + TDE+++EKF++GL   LS
Sbjct: 65  IPAGVVALKKREFRTLKQKDRTVAEYLHEFNRLARYAPEDVRTDEERQEKFLEGLKDELS 124

Query: 189 KTVMAFDGDPFDKIVNMAYKYEKKE 263
            T+++ D   F ++V+ A + E K+
Sbjct: 125 VTLISHDYVDFQQLVDKAIRLEDKK 149


>gb|AAN04195.1| Putative retroelement [Oryza sativa Japonica Group]
          Length = 1523

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/84 (40%), Positives = 55/84 (65%)
 Frame = +3

Query: 9   IPNAVKLQYGEQFANLKQGDKTVAEYVSKFHELSRFAPHLISTDEQKKEKFIQGLNYHLS 188
           IP+ V     ++F +L QG +TV EY+ +F+ L+R+AP  + TDE+++E+F++GLN  LS
Sbjct: 398 IPSGVVSLKKKEFRSLTQGSRTVTEYLQEFNRLARYAPEDVRTDEERQERFLEGLNDELS 457

Query: 189 KTVMAFDGDPFDKIVNMAYKYEKK 260
             +M  D   F K+V+ A + E K
Sbjct: 458 YPLMTGDYHDFQKLVDKAIRQEDK 481