BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041416
         (521 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containi...   224   4e-57
ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54
ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containi...   216   1e-54
ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|2...   213   1e-53
ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containi...   190   9e-47

>ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera] gi|296088567|emb|CBI37558.3| unnamed
           protein product [Vitis vinifera]
          Length = 492

 Score =  224 bits (572), Expect = 4e-57
 Identities = 109/173 (63%), Positives = 133/173 (76%)
 Frame = -1

Query: 521 LHSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGH 342
           LHSWVI++GF  +V+V  S+LDFYAKCG +  A R FV M +RD+VVWN MI G  +A  
Sbjct: 129 LHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACF 188

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
             +AL  FR M   GVK+DSRT+PS+L  CG EGDLM+G+EIHGQVVK+  F  +VAIGN
Sbjct: 189 FRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGN 248

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           SLIDMYAKCGCL  S+KVF  MS  +L+TWT++ISCYGVHGKG E+L LF+KM
Sbjct: 249 SLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKM 301



 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 53/172 (30%), Positives = 88/172 (51%)
 Frame = -1

Query: 518 HSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGHS 339
           H+ ++  GF  ++ +   +L  Y+KCG +  A ++F +M  R+   WN +I+ +      
Sbjct: 29  HAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFF 88

Query: 338 VEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGNS 159
            +ALG F    + G + D  T+P V +AC   GD   G+ +H  V++ I F   V +G+S
Sbjct: 89  YDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIR-IGFEEYVVVGSS 147

Query: 158 LIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           ++D YAKCG L  + + F NMS    + W  +I   G      ++L  F  M
Sbjct: 148 VLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGLGKACFFRDALECFRDM 199



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
 Frame = -1

Query: 521 LHSWVIKLG-FNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAG 345
           +H  V+K   F   V +  S++D YAKCG ++ + ++F  M   + V W SMIS +   G
Sbjct: 230 IHGQVVKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHG 289

Query: 344 HSVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
              EAL  F+KM+  G + +  TI ++L +C   G + +G +I   +     F       
Sbjct: 290 KGHEALALFKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHY 349

Query: 164 NSLIDMYAKCGCLDVSQKVFDNM-SHFSLITWTTLIS 57
             ++D+  + G L+ + ++  NM S  +   W  L++
Sbjct: 350 ACMVDLLGRFGYLEEAFELIKNMKSAATASVWGALLA 386


>ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Cucumis sativus]
          Length = 472

 Score =  216 bits (551), Expect = 1e-54
 Identities = 106/173 (61%), Positives = 132/173 (76%)
 Frame = -1

Query: 521 LHSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGH 342
           LH W IKLGF  +V+V  ++LDFYAKCG V  A ++F +M F+DTV WNSMISG+ RAG 
Sbjct: 100 LHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGV 159

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
            ++AL  F++M   G  +D  TIPSVL ACG EGDL +G+EIH  V+KS  F+ DVA+GN
Sbjct: 160 YMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGN 219

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           SLIDMY+KCG L  S+KVF NMS  +++TWTT+ISCYG HGKGE+SLVLF KM
Sbjct: 220 SLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKM 272



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
 Frame = -1

Query: 521 LHSWVIKLG-FNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAG 345
           +H  V+K   F A V V  S++D Y+KCG++  + ++F  M   + V W +MIS +   G
Sbjct: 201 IHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHG 260

Query: 344 HSVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
              ++L  F KM++ G++ +S T+ ++L +C   G +  G  I   ++   +    V   
Sbjct: 261 KGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHY 320

Query: 164 NSLIDMYAKCGCLDVSQKVFDNMS-HFSLITWTTLISCYGVH 42
              +D+ ++ G L  +  +  NM    +   W  L+S   +H
Sbjct: 321 ACAVDLLSRFGFLKEAFLLIRNMKVKAAASIWGALLSGCMIH 362


>ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  216 bits (551), Expect = 1e-54
 Identities = 106/173 (61%), Positives = 132/173 (76%)
 Frame = -1

Query: 521 LHSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGH 342
           LH W IKLGF  +V+V  ++LDFYAKCG V  A ++F +M F+DTV WNSMISG+ RAG 
Sbjct: 130 LHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGV 189

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
            ++AL  F++M   G  +D  TIPSVL ACG EGDL +G+EIH  V+KS  F+ DVA+GN
Sbjct: 190 YMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGN 249

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           SLIDMY+KCG L  S+KVF NMS  +++TWTT+ISCYG HGKGE+SLVLF KM
Sbjct: 250 SLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKM 302



 Score =  101 bits (251), Expect = 7e-20
 Identities = 54/172 (31%), Positives = 95/172 (55%)
 Frame = -1

Query: 518 HSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGHS 339
           H+ ++  GF  H+ +   +L  Y KCG ++ A  +F +M  R+   WN +I+ +V     
Sbjct: 30  HAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMAHRNMHSWNILIASYVHNSFY 89

Query: 338 VEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGNS 159
            +AL  F + +  G   D  T+P + +A    GD   G+ +H   +K + F G V +G++
Sbjct: 90  FDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGDAYLGKRLHCWTIK-LGFVGYVVVGST 148

Query: 158 LIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           ++D YAKCG +  ++KVFD+M     ++W ++IS YG  G   ++L  F++M
Sbjct: 149 VLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGVYMDALDCFKRM 200



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
 Frame = -1

Query: 521 LHSWVIKLG-FNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAG 345
           +H  V+K   F A V V  S++D Y+KCG++  + ++F  M   + V W +MIS +   G
Sbjct: 231 IHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHG 290

Query: 344 HSVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
              ++L  F KM++ G++ +S T+ ++L +C   G +  G  I   ++   +    V   
Sbjct: 291 KGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHY 350

Query: 164 NSLIDMYAKCGCLDVSQKVFDNMS-HFSLITWTTLISCYGVH 42
              +D+ ++ G L  +  +  NM    +   W  L+S   +H
Sbjct: 351 ACAVDLLSRFGFLKEAFLLIRNMKVKAAASIWGALLSGCMIH 392


>ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|222855687|gb|EEE93234.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  213 bits (542), Expect = 1e-53
 Identities = 104/173 (60%), Positives = 129/173 (74%)
 Frame = -1

Query: 521 LHSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGH 342
           LH WVI+LGF  +V+V  S+LDFY K G +  A R+F  M +RD  VWN MISGF RAG 
Sbjct: 129 LHGWVIRLGFEGYVVVGSSVLDFYLKGGKLVEAKRVFSNMLWRDCGVWNLMISGFGRAGF 188

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
            VEAL   R M E   K+D+  +PS+L ACG EGDLM+G+EIHG+VVKS  F+ DV I N
Sbjct: 189 YVEALSLVRNMVEEEEKLDALVVPSILNACGGEGDLMKGKEIHGRVVKSTLFNVDVVISN 248

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           SLIDMYA+CGCL+ S+KVF NM   +++TWTT+ISCYGVHG+ EESL +F+KM
Sbjct: 249 SLIDMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFKKM 301



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 50/173 (28%), Positives = 90/173 (52%)
 Frame = -1

Query: 521 LHSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGH 342
           +++ ++   + ++V +   +L  Y+K G +  A ++F  MP R+   WN M+S + +   
Sbjct: 28  INAQIVLSNYLSNVTLQTDLLLAYSKSGFLLEARKVFDRMPERNMHSWNIMMSSYAQNYC 87

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
             +A+  F +  + G + D  T+P + +A    GD   G  +HG V++ + F G V +G+
Sbjct: 88  YSDAICIFDEFLKMGFRPDHYTLPPLFKAVAGVGDCYLGFVLHGWVIR-LGFEGYVVVGS 146

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           S++D Y K G L  +++VF NM       W  +IS +G  G   E+L L   M
Sbjct: 147 SVLDFYLKGGKLVEAKRVFSNMLWRDCGVWNLMISGFGRAGFYVEALSLVRNM 199



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
 Frame = -1

Query: 521 LHSWVIKLG-FNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAG 345
           +H  V+K   FN  V++  S++D YA+CG +N + ++F  M   + V W +MIS +   G
Sbjct: 230 IHGRVVKSTLFNVDVVISNSLIDMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHG 289

Query: 344 HSVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
            + E+L  F+KM+  G+K +  T+ +VL +C   G +  G  I   +     F   V   
Sbjct: 290 RAEESLEVFKKMKGFGLKPNPVTLTAVLASCSHSGLIDEGRRIFYSMQSHYGFEPSVEHY 349

Query: 164 NSLIDMYAKCGCLD 123
             ++D+  + G L+
Sbjct: 350 ACMVDLLGRFGYLE 363


>ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 481

 Score =  190 bits (483), Expect = 9e-47
 Identities = 90/174 (51%), Positives = 124/174 (71%), Gaps = 2/174 (1%)
 Frame = -1

Query: 518 HSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAGHS 339
           H  VI++G+  + IV  S+L+FY K G +  A  +F  M  +D+V WN MISGF RAG  
Sbjct: 131 HGLVIRIGYEGYAIVANSLLEFYVKFGAMPQAFCVFSNMSCKDSVTWNLMISGFGRAGLY 190

Query: 338 VEALGHFRKMQERG--VKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
            +A+  FR+M      +++D  T+PSV+ ACG+EGDL++  E+HG VV+S  F  D AIG
Sbjct: 191 SDAMHCFREMLSLNEMMRVDFMTLPSVINACGKEGDLLKVREVHGYVVRSFGFDADAAIG 250

Query: 164 NSLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           N+LID+Y KCGCL+ S+K+F  + H +L+TWTT+ISCYG HGKGEESL+LF+KM
Sbjct: 251 NALIDVYCKCGCLNDSEKIFRTIRHVNLVTWTTMISCYGAHGKGEESLLLFKKM 304



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
 Frame = -1

Query: 521 LHSWVIK-LGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEMPFRDTVVWNSMISGFVRAG 345
           +H +V++  GF+A   +  +++D Y KCG +N + ++F  +   + V W +MIS +   G
Sbjct: 233 VHGYVVRSFGFDADAAIGNALIDVYCKCGCLNDSEKIFRTIRHVNLVTWTTMISCYGAHG 292

Query: 344 HSVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIG 165
              E+L  F+KM + G + +  T+ ++L +C R G + +G+ I   +     F   V   
Sbjct: 293 KGEESLLLFKKMVDEGFRPNPVTLTAILASCSRSGMIDQGKHIFSSICSDYGFEPTVEHY 352

Query: 164 NSLIDMYAKCGCL-DVSQKVFDNMSHFSLITWTTLISCYGVH 42
             ++D+ ++CG L +  Q +    S  +   W  L++   +H
Sbjct: 353 ACMVDLLSRCGYLVEALQLLESKKSSVTGSMWGALLAGCVMH 394



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 1/173 (0%)
 Frame = -1

Query: 518 HSWVIKLGFNAHVIVCCSILDFYAKCGNVNYAHRLFVEM-PFRDTVVWNSMISGFVRAGH 342
           H+     G   + ++   +L  Y+K G +  A ++F +M   R+   WN MI+ + +   
Sbjct: 29  HAQSFVQGLLPNAVLETDLLLVYSKLGLLRKARKVFDKMLDRRNMYSWNIMIASYAQHCM 88

Query: 341 SVEALGHFRKMQERGVKIDSRTIPSVLRACGREGDLMRGEEIHGQVVKSIEFSGDVAIGN 162
             + L  F + +   ++ D  T+P + +A     D   G   HG V++ I + G   + N
Sbjct: 89  YYDVLMVFHEFKHCCLRPDHYTLPPLFKASVGVDDACIGSMCHGLVIR-IGYEGYAIVAN 147

Query: 161 SLIDMYAKCGCLDVSQKVFDNMSHFSLITWTTLISCYGVHGKGEESLVLFEKM 3
           SL++ Y K G +  +  VF NMS    +TW  +IS +G  G   +++  F +M
Sbjct: 148 SLLEFYVKFGAMPQAFCVFSNMSCKDSVTWNLMISGFGRAGLYSDAMHCFREM 200