BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041381
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...   164   7e-39
emb|CBI15839.3| unnamed protein product [Vitis vinifera]              164   7e-39
ref|NP_172105.4| uncharacterized basic helix-loop-helix protein ...   121   7e-26
sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-c...   121   7e-26
dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]           121   7e-26

>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  164 bits (415), Expect = 7e-39
 Identities = 75/103 (72%), Positives = 85/103 (82%)
 Frame = +3

Query: 3   NTMISGYVQCREFRRAVSTFHQMHAEHVRPDEVTMISLLSACAHLGALDMGNWIHAYIRR 182
           NTMIS YVQC EF  A+S F QM +E+V+P EVTM+SLLSACAHLGALDMG WIH YIR 
Sbjct: 174 NTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRT 233

Query: 183 KNFKIDVVLGNALIDMFCKCGSIEAALGIFHRLPMKNTFCWNS 311
           K  KIDVVLGNALIDM+CKCG++EAA+ +FH L  KN FCWNS
Sbjct: 234 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNS 276


>emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  164 bits (415), Expect = 7e-39
 Identities = 75/103 (72%), Positives = 85/103 (82%)
 Frame = +3

Query: 3   NTMISGYVQCREFRRAVSTFHQMHAEHVRPDEVTMISLLSACAHLGALDMGNWIHAYIRR 182
           NTMIS YVQC EF  A+S F QM +E+V+P EVTM+SLLSACAHLGALDMG WIH YIR 
Sbjct: 102 NTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRT 161

Query: 183 KNFKIDVVLGNALIDMFCKCGSIEAALGIFHRLPMKNTFCWNS 311
           K  KIDVVLGNALIDM+CKCG++EAA+ +FH L  KN FCWNS
Sbjct: 162 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNS 204


>ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
            gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity
            to an unknown protein T5J8.5 gi|4263522 from Arabidopsis
            thaliana BAC T5J8 gb|AC004044 and contains multiple PPR
            PF|01535 repeats. ESTs gb|AV565358, gb|AV558710,
            gb|AV524184 come from this gene [Arabidopsis thaliana]
            gi|332189826|gb|AEE27947.1| uncharacterized basic
            helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  121 bits (303), Expect = 7e-26
 Identities = 53/102 (51%), Positives = 74/102 (72%)
 Frame = +3

Query: 6    TMISGYVQCREFRRAVSTFHQMHAEHVRPDEVTMISLLSACAHLGALDMGNWIHAYIRRK 185
            TMI GY Q + +R A++ F++M  E + PDEVTM +++SACAHLG L++G  +H Y  + 
Sbjct: 1002 TMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQN 1061

Query: 186  NFKIDVVLGNALIDMFCKCGSIEAALGIFHRLPMKNTFCWNS 311
             F +DV +G+AL+DM+ KCGS+E AL +F  LP KN FCWNS
Sbjct: 1062 GFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 1103


>sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  121 bits (303), Expect = 7e-26
 Identities = 53/102 (51%), Positives = 74/102 (72%)
 Frame = +3

Query: 6   TMISGYVQCREFRRAVSTFHQMHAEHVRPDEVTMISLLSACAHLGALDMGNWIHAYIRRK 185
           TMI GY Q + +R A++ F++M  E + PDEVTM +++SACAHLG L++G  +H Y  + 
Sbjct: 257 TMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQN 316

Query: 186 NFKIDVVLGNALIDMFCKCGSIEAALGIFHRLPMKNTFCWNS 311
            F +DV +G+AL+DM+ KCGS+E AL +F  LP KN FCWNS
Sbjct: 317 GFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 358


>dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  121 bits (303), Expect = 7e-26
 Identities = 53/102 (51%), Positives = 74/102 (72%)
 Frame = +3

Query: 6   TMISGYVQCREFRRAVSTFHQMHAEHVRPDEVTMISLLSACAHLGALDMGNWIHAYIRRK 185
           TMI GY Q + +R A++ F++M  E + PDEVTM +++SACAHLG L++G  +H Y  + 
Sbjct: 257 TMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQN 316

Query: 186 NFKIDVVLGNALIDMFCKCGSIEAALGIFHRLPMKNTFCWNS 311
            F +DV +G+AL+DM+ KCGS+E AL +F  LP KN FCWNS
Sbjct: 317 GFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 358