BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041269
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    69   3e-10
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    65   6e-09
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    63   3e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   4e-08
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...    62   6e-08

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 42/105 (40%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
 Frame = +3

Query: 48  VYASSLFVRRKSLWRELDAIIP--QFPWMLAGDFNCVPWYEEKRGGLLPNRVAMFDFFSV 221
           VY       RK LW EL   +     P +L GD+N V   +++  G   +     D  S 
Sbjct: 108 VYGLHTIADRKVLWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSF 167

Query: 222 VNHCQLLEAEYSGLHFSWCNNQQGSRRISSMIDKIFVNLLWSNQF 356
           V   QLLEA  +GL +SW N   G+ RISS IDK FVN+ W NQ+
Sbjct: 168 VLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSFVNVAWINQY 212


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
 Frame = +3

Query: 42  TFVYASSLFVRRKSLWRELDAIIPQF--PWMLAGDFNCVPWYEEKRGGLLP-NRVAMFDF 212
           T +YAS  +  R +LW  L  I      PWML GDFN      E+RGG    NR A F  
Sbjct: 103 TCIYASPNYSMRPNLWNYLVNINDTITGPWMLIGDFNETHLPSEQRGGTFHHNRAATFSN 162

Query: 213 FSVVNHCQLLEAEYSGLHFSWCNNQQGSRRISSMIDKIFVNLLWSNQF 356
           F  +N+C LL+   +G  F+W  N  G R +S  +D+   N+ W   F
Sbjct: 163 F--MNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSF 208


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = +3

Query: 42  TFVYASSLFVRRKSLWREL-----DAIIPQFPWMLAGDFNCVPWYEEKRGGLLPNRVA-- 200
           +FVYAS+    RK LW EL       II   PW L GDFN      E     +   V   
Sbjct: 105 SFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPG 164

Query: 201 MFDFFSVVNHCQLLEAEYSGLHFSWCNNQQGSRRISSMIDKIFVNLLWSNQF 356
           M DF  V+N+C L +    G  F+WCN ++    I   +D++ +N  W+  F
Sbjct: 165 MRDFQQVINYCSLTDMAAQGPLFTWCNKREHG-LIMKKLDRVLINDCWNQTF 215


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
 Frame = +3

Query: 48  VYASSLFVRRKSLWRELDAIIPQF--PWMLAGDFNCVPWYEEKRGGLLPNRVAMFDFFSV 221
           VYAS+ +++R+ LW EL  +   F  PW+  GDFN V    EKR    P  ++  DF + 
Sbjct: 105 VYASTFYLKRRQLWAELTNLQGCFQGPWLFIGDFNAVLGAHEKRRRRPPPPLSCIDFMNW 164

Query: 222 VNHCQLLEAEYSGLHFSWCNNQQGSRRISSMIDKIFVNLLWSNQFR 359
            N   L      G  ++W N + GS  ++  +D+   N  W N +R
Sbjct: 165 SNANLLHHLPTLGAFYTWSNGRLGSDNVALRLDRAICNEEWVNFWR 210


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1447

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
 Frame = +3

Query: 42  TFVYASSLFVRRKSLWRELD-----AIIPQFPWMLAGDFNCVPWYEEKRGGLLPNRVA-- 200
           +FVYAS+    RK LW EL       II + PW++ GDFN     EE    +  N V   
Sbjct: 513 SFVYASNFRDDRKVLWNELQDHYDSPIIKKKPWIIFGDFNETLELEE-HSKVEDNPVVSM 571

Query: 201 -MFDFFSVVNHCQLLEAEYSGLHFSWCNNQQGSRRISSMIDKIFVNLLWSNQF 356
            M DF S+VN+C L +  + G  ++W N ++    I+  +D++ VN +W+  F
Sbjct: 572 GMRDFRSMVNYCSLTDMAHHGPLYTWSNKREHD-LIAKKLDRVMVNDVWTQSF 623