BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00041049
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containi...   132   3e-29
emb|CBI40853.3| unnamed protein product [Vitis vinifera]              132   3e-29
ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago t...   131   6e-29
ref|XP_002864963.1| pentatricopeptide repeat-containing protein ...   130   8e-29
ref|NP_201360.1| pentatricopeptide repeat-containing protein [Ar...   130   8e-29

>ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  132 bits (332), Expect = 3e-29
 Identities = 64/99 (64%), Positives = 83/99 (83%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEA 119
           +V G+ VSNVFVGSALVDMY+KFGK+ DARLV D VV KDVVL TALIVGY+ HG+DGE+
Sbjct: 203 VVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGES 262

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           L+VF++M  +GI+ +++T SSVL+ CGNL D++ G+ IH
Sbjct: 263 LQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIH 301



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -2

Query: 289 GLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEV 110
           GLD+   +VG+AL+D Y K G    AR VF+ ++E DVV V ++I  Y Q+G   EAL++
Sbjct: 409 GLDIDK-YVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 467

Query: 109 FKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQI 5
           F  M   G++P++ T+  VL AC N   +  G  I
Sbjct: 468 FSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHI 502



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 56/88 (63%)
 Frame = -2

Query: 265 VGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIEG 86
           +G+ L+D Y K G +  AR VFD V  + +V   ++I  Y ++G+  EA+++++ M+ +G
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 85  IKPDDFTFSSVLIACGNLADMSRGKQIH 2
           I PD+FTFSSV  A  +L  +  G++ H
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAH 199



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/100 (39%), Positives = 62/100 (62%)
 Frame = -2

Query: 301 LLVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGE 122
           ++ +GL+ S V   ++L+ MY + G + D+  VF   +  + V  T++IVG  Q+G++  
Sbjct: 304 IVKAGLE-SAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEI 362

Query: 121 ALEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           AL  F+ M+   I P+ FT SSVL AC +LA + +GKQIH
Sbjct: 363 ALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIH 402


>emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  132 bits (332), Expect = 3e-29
 Identities = 64/99 (64%), Positives = 83/99 (83%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEA 119
           +V G+ VSNVFVGSALVDMY+KFGK+ DARLV D VV KDVVL TALIVGY+ HG+DGE+
Sbjct: 204 VVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGES 263

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           L+VF++M  +GI+ +++T SSVL+ CGNL D++ G+ IH
Sbjct: 264 LQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIH 302



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -2

Query: 289 GLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEV 110
           GLD+   +VG+AL+D Y K G    AR VF+ ++E DVV V ++I  Y Q+G   EAL++
Sbjct: 378 GLDIDK-YVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQL 436

Query: 109 FKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQI 5
           F  M   G++P++ T+  VL AC N   +  G  I
Sbjct: 437 FSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHI 471



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 56/88 (63%)
 Frame = -2

Query: 265 VGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIEG 86
           +G+ L+D Y K G +  AR VFD V  + +V   ++I  Y ++G+  EA+++++ M+ +G
Sbjct: 113 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 85  IKPDDFTFSSVLIACGNLADMSRGKQIH 2
           I PD+FTFSSV  A  +L  +  G++ H
Sbjct: 173 ILPDEFTFSSVFKAFSDLGLVHEGQRAH 200



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
 Frame = -2

Query: 289 GLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVE---KDVVLVTALIVGYTQHGKDGEA 119
           G++ +   + S LV        L   RL+   +V+   +  V  T++IVG  Q+G++  A
Sbjct: 274 GIEANEYTLSSVLV-CCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIA 332

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           L  F+ M+   I P+ FT SSVL AC +LA + +GKQIH
Sbjct: 333 LLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIH 371


>ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|358344096|ref|XP_003636129.1| Pentatricopeptide
           repeat protein [Medicago truncatula]
           gi|355501824|gb|AES83027.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
           gi|355502064|gb|AES83267.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 662

 Score =  131 bits (329), Expect = 6e-29
 Identities = 62/99 (62%), Positives = 80/99 (80%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEA 119
           +V G +VS+ FV + +VDMY+KFGK+ DAR VFD V++KDVVL TALIVGY QHG DGEA
Sbjct: 128 VVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEA 187

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           LEVF+DM+   IKP+++T +SVL++CGNL D+  GK IH
Sbjct: 188 LEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIH 226



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 39/95 (41%), Positives = 58/95 (61%)
 Frame = -2

Query: 289 GLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEV 110
           G+D  N FV +AL+ +Y K G +  AR VFD + E D+V +  +I  Y Q+G   EALE+
Sbjct: 334 GVD-GNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALEL 392

Query: 109 FKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQI 5
           F+ +   G++P+  TF S+L+AC N   +  G QI
Sbjct: 393 FERLKKLGLEPNVVTFISILLACNNAGLVEEGCQI 427



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/86 (39%), Positives = 54/86 (62%)
 Frame = -2

Query: 259 SALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIEGIK 80
           ++L+ MYSK   + D+  VF+ +     V  T+ IVG  Q+G++  AL +F++M+   I 
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSIS 301

Query: 79  PDDFTFSSVLIACGNLADMSRGKQIH 2
           P+ FT SS+L AC +LA +  G+QIH
Sbjct: 302 PNHFTLSSILHACSSLAMLEAGEQIH 327



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/89 (31%), Positives = 50/89 (56%)
 Frame = -2

Query: 268 FVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIE 89
           F G  L+D Y K   + +AR +FD +  + +V   ++I  +   GK  EA+E++ +M+ E
Sbjct: 36  FFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFE 95

Query: 88  GIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           G+ PD +TFS++  A   +     G++ H
Sbjct: 96  GVLPDAYTFSAIFKAFSEMGVSREGQKAH 124


>ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297310798|gb|EFH41222.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 720

 Score =  130 bits (328), Expect = 8e-29
 Identities = 61/99 (61%), Positives = 83/99 (83%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEA 119
           ++ GL+VSNVFVGSALVDMY KFGK  +A+LV D V EKDVVL+TALIVGY+Q G+D EA
Sbjct: 174 VILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEA 233

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           ++ F+ M++E ++P+++T++SVLI+CGNL D+  GK IH
Sbjct: 234 VKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIH 272



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 55/88 (62%)
 Frame = -2

Query: 268 FVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIE 89
           + GS L+++Y K G    ARLVFD + E DV+ +  +I  Y Q+G   EALE+F+ MI  
Sbjct: 386 YAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINL 445

Query: 88  GIKPDDFTFSSVLIACGNLADMSRGKQI 5
           G++P+D T  SVL+AC N   +  G ++
Sbjct: 446 GLQPNDVTVLSVLLACNNSGLVEEGCEL 473



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGS-----ALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHG 134
           L+ GL V + F  +     +L+ MY +   + D+ LVF C+   + V  T+LI G  Q+G
Sbjct: 270 LIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNG 329

Query: 133 KDGEALEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           ++  AL  F+ M+ + +KP+ FT SS L  C NLA    G+Q+H
Sbjct: 330 REETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVH 373



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/100 (34%), Positives = 56/100 (56%)
 Frame = -2

Query: 301 LLVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGE 122
           +L SG  V     GS LVD   K G++  AR +FD + E+ +V   ++I  Y +H +  E
Sbjct: 73  MLKSGFPVE--LSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKE 130

Query: 121 ALEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           A+E+++ MI   + PD++T SSV  A  +L+     ++ H
Sbjct: 131 AVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSH 170


>ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65570 gi|8978285|dbj|BAA98176.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332010689|gb|AED98072.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  130 bits (328), Expect = 8e-29
 Identities = 61/99 (61%), Positives = 83/99 (83%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEA 119
           ++ GL+VSNVFVGSALVDMY KFGK  +A+LV D V EKDVVL+TALIVGY+Q G+D EA
Sbjct: 192 VILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEA 251

Query: 118 LEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           ++ F+ M++E ++P+++T++SVLI+CGNL D+  GK IH
Sbjct: 252 VKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIH 290



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/88 (42%), Positives = 55/88 (62%)
 Frame = -2

Query: 268 FVGSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIE 89
           + GS L+D+Y K G    ARLVFD + E DV+ +  +I  Y Q+G   EAL++F+ MI  
Sbjct: 404 YAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINL 463

Query: 88  GIKPDDFTFSSVLIACGNLADMSRGKQI 5
           G++P+D T  SVL+AC N   +  G ++
Sbjct: 464 GLQPNDVTVLSVLLACNNSRLVEEGCEL 491



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
 Frame = -2

Query: 298 LVSGLDVSNVFVGS-----ALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHG 134
           L+ GL V + F  +     +L+ MY +   + D+  VF C+   + V  T+LI G  Q+G
Sbjct: 288 LIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNG 347

Query: 133 KDGEALEVFKDMIIEGIKPDDFTFSSVLIACGNLADMSRGKQIH 2
           ++  AL  F+ M+ + IKP+ FT SS L  C NLA    G+QIH
Sbjct: 348 REEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIH 391



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/87 (35%), Positives = 49/87 (56%)
 Frame = -2

Query: 262 GSALVDMYSKFGKLADARLVFDCVVEKDVVLVTALIVGYTQHGKDGEALEVFKDMIIEGI 83
           GS LVD   K G +  AR VFD + E+ +V   +LI    +H +  EA+E+++ MI   +
Sbjct: 102 GSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNV 161

Query: 82  KPDDFTFSSVLIACGNLADMSRGKQIH 2
            PD++T SSV  A  +L+     ++ H
Sbjct: 162 LPDEYTLSSVFKAFSDLSLEKEAQRSH 188