BLASTX nr result
ID: Cimicifuga21_contig00041027
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00041027
(323 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containi... 134 8e-30
emb|CBI30147.3| unnamed protein product [Vitis vinifera] 113 2e-23
ref|NP_001078414.1| pentatricopeptide repeat-containing protein ... 110 1e-22
ref|NP_001078415.1| pentatricopeptide repeat-containing protein ... 110 1e-22
emb|CAB45902.1| putative protein (fragment) [Arabidopsis thalian... 110 1e-22
>ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 134 bits (337), Expect = 8e-30
Identities = 66/106 (62%), Positives = 80/106 (75%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G E+HS I+K G+ESDLF+RNALIHLYS FG L+ A+ +F S RDLVS+N+MI GYA
Sbjct: 130 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 189
Query: 141 LGRPTDALHLFREMRNSDVKPDEFTVVALLSACSALNDSNAGKQIH 4
+ +P AL LF EM+NS + PDEFT VAL S CS LN+ N GKQIH
Sbjct: 190 VNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIH 235
Score = 73.6 bits (179), Expect = 2e-11
Identities = 33/80 (41%), Positives = 58/80 (72%)
Frame = -3
Query: 243 YSNFGYLDYAQQVFGASPERDLVSFNSMINGYARLGRPTDALHLFREMRNSDVKPDEFTV 64
Y+ G ++ A+++F ERD++S+ +MI+GY++ G+ ++AL LF+EM +KPDE T+
Sbjct: 291 YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTL 350
Query: 63 VALLSACSALNDSNAGKQIH 4
VA+LSAC+ L + GK+++
Sbjct: 351 VAVLSACARLGAFDLGKRLY 370
>emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 113 bits (282), Expect = 2e-23
Identities = 59/106 (55%), Positives = 78/106 (73%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G E+HS I+K G+ESDLF+RNALIHLYS FG L+ A+ +F S RDLVS+N+MI GYA
Sbjct: 54 GHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAE 113
Query: 141 LGRPTDALHLFREMRNSDVKPDEFTVVALLSACSALNDSNAGKQIH 4
+ +P AL LF EM+NS DE T+VA+LSAC+ L + GK+++
Sbjct: 114 VNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLY 155
>ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g21065 gi|332658994|gb|AEE84394.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 110 bits (275), Expect = 1e-22
Identities = 48/107 (44%), Positives = 79/107 (73%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ IHS +++ G+ S ++++N+L+HLY+N G + A +VF PE+DLV++NS+ING+A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 141 LGRPTDALHLFREMRNSDVKPDEFTVVALLSACSALNDSNAGKQIHL 1
G+P +AL L+ EM + +KPD FT+V+LLSAC+ + GK++H+
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ +H ++K+G +L N L+ LY+ G ++ A+ +F +++ VS+ S+I G A
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 141 LGRPTDALHLFREMRNSD-VKPDEFTVVALLSACS 40
G +A+ LF+ M +++ + P E T V +L ACS
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335
>ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 110 bits (275), Expect = 1e-22
Identities = 48/107 (44%), Positives = 79/107 (73%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ IHS +++ G+ S ++++N+L+HLY+N G + A +VF PE+DLV++NS+ING+A
Sbjct: 7 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66
Query: 141 LGRPTDALHLFREMRNSDVKPDEFTVVALLSACSALNDSNAGKQIHL 1
G+P +AL L+ EM + +KPD FT+V+LLSAC+ + GK++H+
Sbjct: 67 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 113
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ +H ++K+G +L N L+ LY+ G ++ A+ +F +++ VS+ S+I G A
Sbjct: 108 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 167
Query: 141 LGRPTDALHLFREMRNSD-VKPDEFTVVALLSACS 40
G +A+ LF+ M +++ + P E T V +L ACS
Sbjct: 168 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202
>emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 1495
Score = 110 bits (275), Expect = 1e-22
Identities = 48/107 (44%), Positives = 79/107 (73%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ IHS +++ G+ S ++++N+L+HLY+N G + A +VF PE+DLV++NS+ING+A
Sbjct: 140 GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 141 LGRPTDALHLFREMRNSDVKPDEFTVVALLSACSALNDSNAGKQIHL 1
G+P +AL L+ EM + +KPD FT+V+LLSAC+ + GK++H+
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = -3
Query: 321 GQEIHSCIVKIGYESDLFIRNALIHLYSNFGYLDYAQQVFGASPERDLVSFNSMINGYAR 142
G+ +H ++K+G +L N L+ LY+ G ++ A+ +F +++ VS+ S+I G A
Sbjct: 241 GKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAV 300
Query: 141 LGRPTDALHLFREMRNSD-VKPDEFTVVALLSACS 40
G +A+ LF+ M +++ + P E T V +L ACS
Sbjct: 301 NGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 335