BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040974
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24961.3| unnamed protein product [Vitis vinifera]              118   4e-25
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   118   4e-25
ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [...   105   3e-21
ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arab...   100   1e-19
ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD,...    99   4e-19

>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  118 bits (296), Expect = 4e-25
 Identities = 56/93 (60%), Positives = 72/93 (77%)
 Frame = -2

Query: 280 EIAGMIDIHVSNIRLICKSNRPPISLDQTSTDPGCMTLQEIIAGPEEVQPEVMVKKQLMK 101
           EIA  ID++VS +RL+ + +R PIS+DQ  T  GCMTLQEII GP+E  P+ MVK+QLMK
Sbjct: 189 EIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMK 248

Query: 100 KEIHRLLTKLTEREAFVVRLYFGLNGETPRSRE 2
           +E+ R L  L EREA+++RLYFG+NGETP S E
Sbjct: 249 QEVERALNTLCEREAYILRLYFGINGETPLSFE 281


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  118 bits (296), Expect = 4e-25
 Identities = 56/93 (60%), Positives = 72/93 (77%)
 Frame = -2

Query: 280 EIAGMIDIHVSNIRLICKSNRPPISLDQTSTDPGCMTLQEIIAGPEEVQPEVMVKKQLMK 101
           EIA  ID++VS +RL+ + +R PIS+DQ  T  GCMTLQEII GP+E  P+ MVK+QLMK
Sbjct: 296 EIAEFIDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMK 355

Query: 100 KEIHRLLTKLTEREAFVVRLYFGLNGETPRSRE 2
           +E+ R L  L EREA+++RLYFG+NGETP S E
Sbjct: 356 QEVERALNTLCEREAYILRLYFGINGETPLSFE 388


>ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 389

 Score =  105 bits (263), Expect = 3e-21
 Identities = 52/91 (57%), Positives = 68/91 (74%)
 Frame = -2

Query: 280 EIAGMIDIHVSNIRLICKSNRPPISLDQTSTDPGCMTLQEIIAGPEEVQPEVMVKKQLMK 101
           EIA  +++HVS +RL+   +R  +SLDQ  +D G MTLQEII GPEE+ PE MVKKQL+K
Sbjct: 283 EIAKELNVHVSTVRLVFSRSRSTVSLDQAVSDQGGMTLQEIIPGPEEMMPENMVKKQLLK 342

Query: 100 KEIHRLLTKLTEREAFVVRLYFGLNGETPRS 8
           KE+  L+  L +REA  +RL FGLNG+TP+S
Sbjct: 343 KELEELIQTLGKREAHTLRLIFGLNGQTPQS 373


>ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
           lyrata] gi|297319462|gb|EFH49884.1| hypothetical protein
           ARALYDRAFT_909325 [Arabidopsis lyrata subsp. lyrata]
          Length = 273

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/93 (54%), Positives = 68/93 (73%)
 Frame = -2

Query: 280 EIAGMIDIHVSNIRLICKSNRPPISLDQTSTDPGCMTLQEIIAGPEEVQPEVMVKKQLMK 101
           EIA  +++HVS +RL  + +R P+SLD+  +  G MTLQEI+ GP+E +PE MVK++ MK
Sbjct: 140 EIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQNGRMTLQEIVRGPDETRPEEMVKREHMK 199

Query: 100 KEIHRLLTKLTEREAFVVRLYFGLNGETPRSRE 2
            EI +LL  LT RE+ V+ LYFGLNGETP S E
Sbjct: 200 HEIEQLLGSLTARESRVLGLYFGLNGETPMSFE 232


>ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Cucumis sativus]
          Length = 341

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 46/93 (49%), Positives = 69/93 (74%)
 Frame = -2

Query: 280 EIAGMIDIHVSNIRLICKSNRPPISLDQTSTDPGCMTLQEIIAGPEEVQPEVMVKKQLMK 101
           E+A  + +H+S IRL+ + ++ PIS++Q   D  C+TLQEI+ GP+ + PE MV ++LMK
Sbjct: 211 EVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMK 270

Query: 100 KEIHRLLTKLTEREAFVVRLYFGLNGETPRSRE 2
           +E+ RLL  L++REA ++ LYFGLNGE P+S E
Sbjct: 271 QELKRLLNTLSKREARILSLYFGLNGEIPQSFE 303