BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040910
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307758.1| high mobility group family [Populus trichoca...    62   4e-08
gb|ABK95398.1| unknown [Populus trichocarpa]                           62   4e-08
ref|XP_002889059.1| high mobility group family protein [Arabidop...    60   2e-07
ref|NP_177738.1| high mobility group-box and ARID domain-binding...    59   4e-07
ref|XP_003523234.1| PREDICTED: high mobility group B protein 9-l...    58   9e-07

>ref|XP_002307758.1| high mobility group family [Populus trichocarpa]
           gi|222857207|gb|EEE94754.1| high mobility group family
           [Populus trichocarpa]
          Length = 329

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +3

Query: 51  SNRSTVVGKISGKFEHGYFVTVKIGSEMLHGVLYHPAGFESSSPLPSNNASIVPYNP 221
           S+  +  G I GKF+ GY V+V++GSE+LHGVLYHP   + S+ +P  + +IVPY P
Sbjct: 166 SSSFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQDLSNSIPQYDGAIVPYTP 222


>gb|ABK95398.1| unknown [Populus trichocarpa]
          Length = 317

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +3

Query: 51  SNRSTVVGKISGKFEHGYFVTVKIGSEMLHGVLYHPAGFESSSPLPSNNASIVPYNP 221
           S+  +  G I GKF+ GY V+V++GSE+LHGVLYHP   + S+ +P  + +IVPY P
Sbjct: 154 SSSFSASGTIEGKFDCGYLVSVQLGSEVLHGVLYHPDQQDLSNSIPQYDGAIVPYTP 210


>ref|XP_002889059.1| high mobility group family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297334900|gb|EFH65318.1| high mobility group
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 338

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +3

Query: 48  GSNRSTVVGKISGKFEHGYFVTVKIGSEMLHGVLYHPA-GFESSSPLPSNNASIVPY 215
           GS+  T +G I GKF+ GY V VK+GSE+L+GVLYH A    SSSP    N ++VPY
Sbjct: 174 GSSSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYHSAQPGPSSSPSADLNGAVVPY 230


>ref|NP_177738.1| high mobility group-box and ARID domain-binding domain-containing
           protein [Arabidopsis thaliana]
           gi|75265821|sp|Q9SGS2.1|HMGB9_ARATH RecName: Full=High
           mobility group B protein 9; AltName:
           Full=Nucleosome/chromatin assembly factor group D 09;
           Short=Nucleosome/chromatin assembly factor group D 9
           gi|6573729|gb|AAF17649.1|AC009978_25 T23E18.4
           [Arabidopsis thaliana] gi|20466328|gb|AAM20481.1|
           unknown protein [Arabidopsis thaliana]
           gi|31711812|gb|AAP68262.1| At1g76110 [Arabidopsis
           thaliana] gi|332197676|gb|AEE35797.1| high mobility
           group-box and ARID domain-binding domain-containing
           protein [Arabidopsis thaliana]
          Length = 338

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 31/57 (54%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +3

Query: 48  GSNRSTVVGKISGKFEHGYFVTVKIGSEMLHGVLYHPA-GFESSSPLPSNNASIVPY 215
           GS+  T +G I GKF+ GY V VK+GSE+L+GVLYH A    SSSP    N ++VPY
Sbjct: 174 GSSSFTAIGTIEGKFDCGYLVKVKLGSEILNGVLYHSAQPGPSSSPTAVLNNAVVPY 230


>ref|XP_003523234.1| PREDICTED: high mobility group B protein 9-like [Glycine max]
          Length = 322

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/69 (42%), Positives = 38/69 (55%)
 Frame = +3

Query: 72  GKISGKFEHGYFVTVKIGSEMLHGVLYHPAGFESSSPLPSNNASIVPYNPAPPSYSXXXX 251
           G I GKF+ GY V+VK+GSE+L GVLYHP        +P + ++IVP N  P  +     
Sbjct: 172 GTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQLVPPPSIPKHESAIVPINRKP--HRSGRR 229

Query: 252 XXXXXLWDP 278
                 WDP
Sbjct: 230 KKNKRRWDP 238