BLASTX nr result
ID: Cimicifuga21_contig00040876
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00040876
(272 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containi... 141 6e-32
emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera] 138 5e-31
ref|XP_002510620.1| pentatricopeptide repeat-containing protein,... 132 3e-29
ref|XP_003610363.1| Pentatricopeptide repeat-containing protein ... 132 4e-29
ref|XP_002318942.1| predicted protein [Populus trichocarpa] gi|2... 129 2e-28
>ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera] gi|302141693|emb|CBI18896.3| unnamed
protein product [Vitis vinifera]
Length = 703
Score = 141 bits (355), Expect = 6e-32
Identities = 71/90 (78%), Positives = 77/90 (85%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EFV TSVLSAL L E V+ KQIHC+AVKNGLLS V+VGNALVTMYAKCG L DAL+ FE
Sbjct: 209 EFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFE 268
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
S+KNSITWSAMITGYAQ GDSDKAL+LF
Sbjct: 269 TSSDKNSITWSAMITGYAQSGDSDKALKLF 298
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/90 (42%), Positives = 52/90 (57%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
E + SVL A ++ KQIH VK G V +G+AL TMYAKCG L+D F
Sbjct: 411 ELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR 470
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ ++ I+W+AMI+G +Q G +AL LF
Sbjct: 471 RMPARDVISWNAMISGLSQNGCGKEALELF 500
Score = 64.3 bits (155), Expect = 1e-08
Identities = 34/90 (37%), Positives = 50/90 (55%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF V++A KQ+H +K G S + V ALV MYAKC + DA + F+
Sbjct: 310 EFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFD 369
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
L E + + W++MI GY Q G+++ AL L+
Sbjct: 370 YLQEPDIVLWTSMIGGYVQNGENEDALSLY 399
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 71 HCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFELLSEKNSITWSAMITGYAQGGDS 250
H +A+K V VG++L+ MY K G +A + F+ + E+NS++W+ MI+GYA +
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLA 190
Query: 251 DKALRLF 271
+AL LF
Sbjct: 191 AEALGLF 197
>emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 138 bits (347), Expect = 5e-31
Identities = 70/90 (77%), Positives = 76/90 (84%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EFV TSVLSAL L E V+ KQIHC+AVKNGLLS V+VGNALVTMYAKCG L DAL+ FE
Sbjct: 209 EFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFE 268
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
S+KNSITWSAMITG AQ GDSDKAL+LF
Sbjct: 269 TSSDKNSITWSAMITGXAQSGDSDKALKLF 298
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/90 (42%), Positives = 52/90 (57%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
E + SVL A ++ KQIH VK G V +G+AL TMYAKCG L+D F
Sbjct: 411 ELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFR 470
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ ++ I+W+AMI+G +Q G +AL LF
Sbjct: 471 RMPARDVISWNAMISGLSQNGCGKEALELF 500
Score = 64.3 bits (155), Expect = 1e-08
Identities = 34/90 (37%), Positives = 50/90 (55%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF V++A KQ+H +K G S + V ALV MYAKC + DA + F+
Sbjct: 310 EFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFD 369
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
L E + + W++MI GY Q G+++ AL L+
Sbjct: 370 YLQEPDIVLWTSMIGGYVQNGENEDALSLY 399
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 71 HCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFELLSEKNSITWSAMITGYAQGGDS 250
H +A+K V VG++L+ MY K G +A + F+ + E+NS++W+ MI+GYA +
Sbjct: 131 HAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLA 190
Query: 251 DKALRLF 271
+AL LF
Sbjct: 191 AEALGLF 197
>ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223551321|gb|EEF52807.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 708
Score = 132 bits (332), Expect = 3e-29
Identities = 65/90 (72%), Positives = 75/90 (83%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF TSVLSAL + EFVD KQIHCLAVK GLL F+++ NALVTMYAKCG L D+L+ FE
Sbjct: 212 EFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFE 271
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ ++KNSITWSAMITGYAQ GDS KAL+LF
Sbjct: 272 MSNDKNSITWSAMITGYAQSGDSHKALKLF 301
Score = 72.4 bits (176), Expect = 4e-11
Identities = 38/90 (42%), Positives = 54/90 (60%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
E + SVL A D +QIH +K GL V +G+AL TMYAKCG+L++ F
Sbjct: 414 ELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFR 473
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ E++ I+W+AMI+G +Q G +AL LF
Sbjct: 474 RMPERDIISWNAMISGLSQNGYGKEALELF 503
Score = 65.9 bits (159), Expect = 3e-09
Identities = 35/90 (38%), Positives = 52/90 (57%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF L VL+A V+ KQ+H +K G S + + ALV MYAK G +DA + F
Sbjct: 313 EFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFN 372
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
L + + + W++MI GY Q G+++ AL L+
Sbjct: 373 YLQQPDLVLWTSMIAGYVQNGENEDALSLY 402
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +2
Query: 62 KQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFELLSEKNSITWSAMITGYAQG 241
+Q H +A+K V VG++L+ MY K G L +A F+ + E+N +TW+ MI+GYA
Sbjct: 131 QQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQ 190
Query: 242 GDSDKALRLF 271
+ +A +F
Sbjct: 191 RLAGEAFEVF 200
>ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 734
Score = 132 bits (331), Expect = 4e-29
Identities = 64/90 (71%), Positives = 74/90 (82%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF LTSVLSAL + FV +Q+H LA+KNGLL+ V+V NALVTMYAKCG L DA+R FE
Sbjct: 219 EFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFE 278
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+KNSITWSAM+TGYAQGGDSDKAL+LF
Sbjct: 279 FSGDKNSITWSAMVTGYAQGGDSDKALKLF 308
Score = 68.9 bits (167), Expect = 4e-10
Identities = 36/90 (40%), Positives = 50/90 (55%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
E + SVL A +D KQ+H +K G V +G+AL MY KCG L D F
Sbjct: 421 ELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFW 480
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ ++ I+W+AMI+G +Q G +KAL LF
Sbjct: 481 RMPSRDVISWNAMISGLSQNGHGNKALELF 510
Score = 68.6 bits (166), Expect = 5e-10
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +2
Query: 11 LTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFELLS 190
L V SA V KQ H +AVK G V VG++L+ MY K G + DA + F+ +
Sbjct: 121 LAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP 180
Query: 191 EKNSITWSAMITGYAQGGDSDKALRLF 271
E+N+++W+ MI+GYA +DKA+ +F
Sbjct: 181 ERNTVSWATMISGYASSDIADKAVEVF 207
Score = 66.2 bits (160), Expect = 3e-09
Identities = 36/90 (40%), Positives = 52/90 (57%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF L V++A V KQ+H A K G + V +A+V MYAKCG L DA + FE
Sbjct: 320 EFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFE 379
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ + + + W+++ITGY Q GD + L L+
Sbjct: 380 CVQQPDVVLWTSIITGYVQNGDYEGGLNLY 409
>ref|XP_002318942.1| predicted protein [Populus trichocarpa] gi|222857318|gb|EEE94865.1|
predicted protein [Populus trichocarpa]
Length = 707
Score = 129 bits (324), Expect = 2e-28
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EFV TSVLSALV EFVD KQ+HC+ VKNG+L FV+V NALVTMYAKCG+L +L FE
Sbjct: 213 EFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFE 272
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ S+KN+ITWSA+ITGY+Q GDS KAL+LF
Sbjct: 273 MCSDKNAITWSALITGYSQAGDSHKALKLF 302
Score = 68.6 bits (166), Expect = 5e-10
Identities = 34/90 (37%), Positives = 55/90 (61%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
E + SVL A ++ KQIH +K GL +++ +AL TMYAKCG L++ + F
Sbjct: 415 ELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFR 474
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
+ +++ ++W+AMI+G +Q G +AL LF
Sbjct: 475 RMLQRDIVSWNAMISGLSQNGHGREALELF 504
Score = 62.8 bits (151), Expect = 3e-08
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = +2
Query: 2 EFVLTSVLSALVLNEFVDVSKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFE 181
EF L VL A ++ KQ H +K+G + + ALV MYAK G DA + F+
Sbjct: 314 EFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFD 373
Query: 182 LLSEKNSITWSAMITGYAQGGDSDKALRLF 271
L E + + W+++I GY Q G +++AL ++
Sbjct: 374 FLLEPDLVLWTSIIAGYVQNGKNEEALSMY 403
Score = 56.2 bits (134), Expect = 3e-06
Identities = 25/71 (35%), Positives = 45/71 (63%)
Frame = +2
Query: 59 SKQIHCLAVKNGLLSFVAVGNALVTMYAKCGHLQDALRAFELLSEKNSITWSAMITGYAQ 238
++Q+H L +K + V VG++LV Y K G + +A + F+ + E+N ++W+ MI+GYA
Sbjct: 131 ARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYAS 190
Query: 239 GGDSDKALRLF 271
+ +AL +F
Sbjct: 191 KQMAKEALGVF 201