BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040823
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...   106   2e-21
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...   105   5e-21
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   105   5e-21
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   101   6e-20
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   101   7e-20

>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/108 (48%), Positives = 70/108 (64%)
 Frame = -3

Query: 331 LFNGSPEGCFKSTRGLIQGDPLSPFLFIICMEILTRLIHQKELEGKIQGAKISYSGPTVS 152
           L NGS +G     RGL QGDPLSPFLFIIC E+L+ L  + +L+G + G ++S   P V+
Sbjct: 444 LLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVN 503

Query: 151 RLLFADDLFIFCRADLGNAYEISDTLKTFEDITGQTINFAKSGIIFNK 8
            LLFADD   FCR+DL +       LK +E+ +GQ IN +KS I F++
Sbjct: 504 HLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSR 551


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score =  105 bits (261), Expect = 5e-21
 Identities = 51/106 (48%), Positives = 69/106 (65%)
 Frame = -3

Query: 331 LFNGSPEGCFKSTRGLIQGDPLSPFLFIICMEILTRLIHQKELEGKIQGAKISYSGPTVS 152
           L NGSP+G  K +RG+ QGDP+SPFLFI+C E L   +   E  G+IQG +IS + P+ S
Sbjct: 199 LLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTS 258

Query: 151 RLLFADDLFIFCRADLGNAYEISDTLKTFEDITGQTINFAKSGIIF 14
            LLFADD   FC+AD     EI D L+ + + +GQ +N  KS ++F
Sbjct: 259 HLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDKSSVMF 304


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score =  105 bits (261), Expect = 5e-21
 Identities = 51/106 (48%), Positives = 69/106 (65%)
 Frame = -3

Query: 331 LFNGSPEGCFKSTRGLIQGDPLSPFLFIICMEILTRLIHQKELEGKIQGAKISYSGPTVS 152
           L NGSP+G  K +RG+ QGDP+SPFLFI+C E L   +   E  G+IQG +IS + P+ S
Sbjct: 565 LLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQISRASPSTS 624

Query: 151 RLLFADDLFIFCRADLGNAYEISDTLKTFEDITGQTINFAKSGIIF 14
            LLFADD   FC+AD     EI D L+ + + +GQ +N  KS ++F
Sbjct: 625 HLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDKSSVMF 670


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/108 (45%), Positives = 70/108 (64%)
 Frame = -3

Query: 331  LFNGSPEGCFKSTRGLIQGDPLSPFLFIICMEILTRLIHQKELEGKIQGAKISYSGPTVS 152
            L NGSP G    +RG+ QGDPLSP+LF+ C E+L+ ++ + E+  +I G KI+     +S
Sbjct: 980  LINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAIS 1039

Query: 151  RLLFADDLFIFCRADLGNAYEISDTLKTFEDITGQTINFAKSGIIFNK 8
             LLFADD   FCRA   N  +++   K +E+ +GQ IN+AKS IIF +
Sbjct: 1040 HLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQ 1087


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  101 bits (251), Expect = 7e-20
 Identities = 51/106 (48%), Positives = 66/106 (62%)
 Frame = -3

Query: 331 LFNGSPEGCFKSTRGLIQGDPLSPFLFIICMEILTRLIHQKELEGKIQGAKISYSGPTVS 152
           L NG P+G     RGL QGDPLSP+LFI+C E+L   I + E +  I G K++   P VS
Sbjct: 402 LINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVS 461

Query: 151 RLLFADDLFIFCRADLGNAYEISDTLKTFEDITGQTINFAKSGIIF 14
            LLFADD   FC+A+      I + LK +E ++GQ INF+KS I F
Sbjct: 462 HLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQF 507