BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040793
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containi...   188   3e-46
emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]   187   1e-45
ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
ref|XP_003602717.1| Pentatricopeptide repeat-containing protein ...   172   3e-41
ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40

>ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  188 bits (478), Expect = 3e-46
 Identities = 92/151 (60%), Positives = 117/151 (77%)
 Frame = +1

Query: 1   RNSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTS 180
           +N LI+ YG  G +D +  VF E+  RDL+ WSS+IAC   N    EALALF+ MQ+  +
Sbjct: 122 QNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 181 IRPDEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAI 360
           ++PDEV ++SV+SAIS LG LELGKW+  FI RN L+ T+SLGT L++M+SRCG IEE++
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 361 RVFDEMHQRNVITWTALINGLAVHGRSEEAL 453
           RVFDEM +RNV+TWTALINGLAVHGRS EAL
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEAL 272



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 38/135 (28%), Positives = 78/135 (57%)
 Frame = +1

Query: 49  SRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIRPDEVTMVSVISAIS 228
           +R++F+ I+  D   +++II    D+  +  +L+LF +M ++  + PD  T   V+ A +
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAHADSSPSF-SLSLFSKMAMA-GVSPDHFTFPFVLKACA 98

Query: 229 SLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAIRVFDEMHQRNVITWTA 408
            L   + G  +H  +++   D  + +   LI+ Y  CG ++ A++VF+EM +R++++W++
Sbjct: 99  RL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSS 155

Query: 409 LINGLAVHGRSEEAL 453
           +I   A +G   EAL
Sbjct: 156 MIACFAKNGFGYEAL 170



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
 Frame = +1

Query: 7   SLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIR 186
           +L++M+   G ++ S  VF+E+  R+++ W+++I  L  +  + EAL +F EM+ +   +
Sbjct: 226 ALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMR-NHGFQ 284

Query: 187 PDEVTMVSVISAISSLGSLELGKWVHLFIYRNRL---DLTISLGTELINMYSRCGSIEEA 357
           PD VT   V+ A S  G +  G W      RN      L    G  ++++  R G + EA
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEG-WHVFESIRNEYGMEPLPEHYGC-MVDLLGRAGLLNEA 342

Query: 358 IRVFDEMHQR-NVITWTALINGLAVHGRSEEA 450
            +  D M  R N I W  L+     H   E A
Sbjct: 343 CKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374


>emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  187 bits (474), Expect = 1e-45
 Identities = 91/151 (60%), Positives = 116/151 (76%)
 Frame = +1

Query: 1   RNSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTS 180
           +N LI+ YG  G +D +   F E+  RDL+ WSS+IAC   N    EALALF+ MQ+  +
Sbjct: 122 QNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGT 181

Query: 181 IRPDEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAI 360
           ++PDEV ++SV+SAIS LG LELGKW+  FI RN L+ T+SLGT L++M+SRCG IEE++
Sbjct: 182 VKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESM 241

Query: 361 RVFDEMHQRNVITWTALINGLAVHGRSEEAL 453
           RVFDEM +RNV+TWTALINGLAVHGRS EAL
Sbjct: 242 RVFDEMGERNVLTWTALINGLAVHGRSAEAL 272



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/135 (27%), Positives = 77/135 (57%)
 Frame = +1

Query: 49  SRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIRPDEVTMVSVISAIS 228
           +R++F+ I+  D   +++II    D+  +  +L+LF +M ++  + PD  T   V+ A +
Sbjct: 41  ARSIFDLIAFPDTFAFNTIIRAHADSSPSF-SLSLFSKMTMA-GVSPDHFTFPFVLKACA 98

Query: 229 SLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAIRVFDEMHQRNVITWTA 408
            L   + G  +H  +++   D  + +   LI+ Y  CG ++ A++ F+EM +R++++W++
Sbjct: 99  RL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSS 155

Query: 409 LINGLAVHGRSEEAL 453
           +I   A +G   EAL
Sbjct: 156 MIACFAKNGFGYEAL 170



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
 Frame = +1

Query: 7   SLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIR 186
           +L++M+   G ++ S  VF+E+  R+++ W+++I  L  +  + EAL +F EM+ +   +
Sbjct: 226 ALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMR-NHGFQ 284

Query: 187 PDEVTMVSVISAISSLGSLELGKWVHLFIYRNRL---DLTISLGTELINMYSRCGSIEEA 357
           PD VT   V+ A S  G +  G W      RN      L    G  ++++  R G + EA
Sbjct: 285 PDHVTFTGVLVACSHGGLVSEG-WHVFESIRNEYGMEPLPEHYGC-MVDLLGRAGLLNEA 342

Query: 358 IRVFDEMHQR-NVITWTALINGLAVHGRSEEA 450
            +  D M  R N I W  L+     H   E A
Sbjct: 343 CKFVDGMPIRPNSIIWRTLLGACVNHNYIELA 374


>ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  177 bits (448), Expect = 1e-42
 Identities = 90/152 (59%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
 Frame = +1

Query: 1   RNSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTS 180
           +N+LIN YG+ G +  S  +F+E+  RDLI WSS+I+C        EAL LF++MQ+  S
Sbjct: 131 QNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKES 190

Query: 181 -IRPDEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEA 357
            I PD V M+SVISA+SSLG+LELG WVH FI R  ++LT+SLG+ LI+MYSRCG I+ +
Sbjct: 191 DILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRS 250

Query: 358 IRVFDEMHQRNVITWTALINGLAVHGRSEEAL 453
           ++VFDEM  RNV+TWTALINGLAVHGR  EAL
Sbjct: 251 VKVFDEMPHRNVVTWTALINGLAVHGRGREAL 282



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
 Frame = +1

Query: 4   NSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSI 183
           ++LI+MY   G +D S  VF+E+  R+++ W+++I  L  +   +EAL  F +M + + +
Sbjct: 235 SALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDM-VESGL 293

Query: 184 RPDEVTMVSVISAISSLGSLELGKWVHLFIYRN-RLDLTISLGTELINMYSRCGSIEEAI 360
           +PD +  + V+ A S  G +E G+ V   ++    ++  +     ++++  R G + EA 
Sbjct: 294 KPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAF 353

Query: 361 RVFDEMHQR-NVITWTALINGLAVH 432
              + M  R N + W  L+     H
Sbjct: 354 DFVEGMRVRPNSVIWRTLLGACVNH 378


>ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491765|gb|AES72968.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  172 bits (436), Expect = 3e-41
 Identities = 88/154 (57%), Positives = 118/154 (76%), Gaps = 3/154 (1%)
 Frame = +1

Query: 1   RNSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQIS-T 177
           +N+LIN YGS G +D +  +F+E+  RD++ WS++I+CLV N+   EAL++F++MQ+   
Sbjct: 115 QNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHR 174

Query: 178 SIRP--DEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIE 351
            IR   D   M+SVISA+SSLG +ELG WVH FI R  + +T+ LGT LINMYSRCG I+
Sbjct: 175 DIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLID 234

Query: 352 EAIRVFDEMHQRNVITWTALINGLAVHGRSEEAL 453
            +++VFDEM +RNV+TWTALINGLAVHGRS EAL
Sbjct: 235 RSVKVFDEMPERNVVTWTALINGLAVHGRSREAL 268



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
 Frame = +1

Query: 7   SLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIR 186
           +LINMY   GL+D S  VF+E+  R+++ W+++I  L  +  ++EAL +F EM+  + ++
Sbjct: 222 ALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMK-ESGLK 280

Query: 187 PDEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTE--LINMYSRCGSIEEAI 360
           PD    + V+ A S  G +E G W      R+   +   L     ++++  R G I EA 
Sbjct: 281 PDGALFIGVLVACSHGGLVEDG-WRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAF 339

Query: 361 RVFDEMHQR-NVITWTALINGLAVH---GRSEEA 450
              +EM  + N + W  L+     H   G +E+A
Sbjct: 340 DFVEEMPLKPNSVIWRTLLGACVNHNHLGLAEKA 373


>ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  169 bits (427), Expect = 3e-40
 Identities = 86/151 (56%), Positives = 115/151 (76%)
 Frame = +1

Query: 1   RNSLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTS 180
           +N+LI +YG  G ++ +  VF+E+S RD + WS++IA  ++N    EAL LF +MQ+   
Sbjct: 122 QNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDK 181

Query: 181 IRPDEVTMVSVISAISSLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAI 360
           + PDEVTM+SVISAIS LG LELG+WV  FI R  L ++++LGT LI+M+SRCGSI+E+I
Sbjct: 182 VVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESI 241

Query: 361 RVFDEMHQRNVITWTALINGLAVHGRSEEAL 453
            VF++M  RNV+TWTALINGL VHGRS EAL
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGVHGRSTEAL 272



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 44/135 (32%), Positives = 69/135 (51%)
 Frame = +1

Query: 49  SRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIRPDEVTMVSVISAIS 228
           +R VF+ I   D I +++II           +L  F  M+ S  I  D  T   V+ A S
Sbjct: 41  ARYVFSRIPSPDTIAYNTIIRSH-SRFFPSHSLFYFFSMR-SNGIPLDNFTFPFVLKACS 98

Query: 229 SLGSLELGKWVHLFIYRNRLDLTISLGTELINMYSRCGSIEEAIRVFDEMHQRNVITWTA 408
            L   ++   +H  I +  LD  I +   LI +Y  CGS+E A++VFDEM +R+ ++W+ 
Sbjct: 99  RL---QINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWST 155

Query: 409 LINGLAVHGRSEEAL 453
           +I     +G + EAL
Sbjct: 156 VIASFLNNGYASEAL 170



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
 Frame = +1

Query: 7   SLINMYGSWGLVDNSRNVFNEIS*RDLILWSSIIACLVDNDCNQEALALFREMQISTSIR 186
           +LI+M+   G +D S  VF +++ R+++ W+++I  L  +  + EALA+F  M+  + ++
Sbjct: 226 ALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMR-KSGVQ 284

Query: 187 PDEVTMVSVISAISSLGSLELGKWVHLFIYR-NRLDLTISLGTELINMYSRCGSIEEAIR 363
           PD VT   V+ A S  G ++ G  +   I +  R+D  +     ++++  R G + EA  
Sbjct: 285 PDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYD 344

Query: 364 VFDEMHQR-NVITWTALINGLAVH 432
             + M  + N I W  L+     H
Sbjct: 345 FVERMPMKPNSIIWRTLLGACVNH 368