BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040766
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|2...    71   8e-11
ref|NP_195434.1| pentatricopeptide repeat-containing protein [Ar...    66   3e-09
ref|XP_002522334.1| pentatricopeptide repeat-containing protein,...    66   3e-09
ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08

>ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
 Frame = -1

Query: 246 TKTHSNEPFFKP---NDHVNLLCRERKFKEAIHILCQQKRLKEAIQVLDLLDSSKTIPSA 76
           +K   +  FFK    ++ V  LC++  FKEAI ILC+QKRL+EAIQ+LD +D     PSA
Sbjct: 34  SKPPIHNTFFKSGAKDELVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDR----PSA 89

Query: 75  TTYSSLLQLCGELRELKSAKKIDAH 1
            TYS+LLQLC +LR L    K+ AH
Sbjct: 90  ATYSTLLQLCLQLRALDEGMKVHAH 114


>ref|XP_002324099.1| predicted protein [Populus trichocarpa] gi|222867101|gb|EEF04232.1|
           predicted protein [Populus trichocarpa]
          Length = 676

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 41/89 (46%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
 Frame = -1

Query: 240 THSNEPF-----FKPNDH----VNLLCRERKFKEAIHILCQQKRLKEAIQVLDLLDSSKT 88
           +HS+ PF     FK N      V  LC  ++F EAIHILCQQ RLKEA+Q+L  +D    
Sbjct: 11  SHSSSPFQPKTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDK--- 67

Query: 87  IPSATTYSSLLQLCGELRELKSAKKIDAH 1
            PSA+ YS+L+Q C + R L+  KK+  H
Sbjct: 68  -PSASVYSTLIQSCIKSRLLQQGKKVHQH 95


>ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75097747|sp|O23169.1|PP353_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g37170 gi|2464864|emb|CAB16758.1| putative protein
           [Arabidopsis thaliana] gi|7270666|emb|CAB80383.1|
           putative protein [Arabidopsis thaliana]
           gi|332661361|gb|AEE86761.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
 Frame = -1

Query: 252 SSTKTHSNEPFFKPNDH-----VNLLCRERKFKEAIHILCQQKRLKEAIQVLDLLDSSKT 88
           +S K  S++ FF PN       V  LCR  +F EAI +LC QK L+EA+Q+L        
Sbjct: 26  ASLKRFSDKKFFNPNHEDGGVVVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKK--- 82

Query: 87  IPSATTYSSLLQLCGELRELKSAKKIDAH 1
            P A+TY +L+Q+C + R L+  KK+  H
Sbjct: 83  -PPASTYCNLIQVCSQTRALEEGKKVHEH 110


>ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538412|gb|EEF40018.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
 Frame = -1

Query: 255 SSSTKTHSNEPFFK---PNDHVNLLCRERKFKEAIHILCQQKRLKEAIQVLDLLDSSKTI 85
           S S    S+   FK    +  ++ LC E +FKEAI +LC+Q RLKEAIQVL+ +D     
Sbjct: 22  SQSYNPLSHRTIFKLSSKDSFIDRLCNEGRFKEAIALLCEQNRLKEAIQVLNQIDR---- 77

Query: 84  PSATTYSSLLQLCGELRELKSAKKIDAH 1
           PS + YSSL+Q C + R L+  KK+  H
Sbjct: 78  PSPSIYSSLIQSCLKNRALEVGKKVHDH 105


>ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
 Frame = -1

Query: 255 SSSTKTHSNEPFFKPN--DHVN---LLCRERKFKEAIHILCQQKRLKEAIQVLDLLDSSK 91
           SSS+ +HS    F+ +  +H+N   L+  + KF+EA+ +LCQQKR+KEA+++L   D   
Sbjct: 26  SSSSSSHSRHFQFRNDKRNHLNPKDLVSEDNKFEEAVDVLCQQKRVKEAVELLHRTDHR- 84

Query: 90  TIPSATTYSSLLQLCGELRELKSAKKIDAH 1
             PSA  YS+L+  C   R L+  +++ AH
Sbjct: 85  --PSARVYSTLIAACVRHRALELGRRVHAH 112