BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040703
         (458 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34116.3| unnamed protein product [Vitis vinifera]              109   3e-22
ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-22
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,...    94   9e-18
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,...    85   5e-15
ref|NP_172835.1| pentatricopeptide repeat-containing protein [Ar...    84   9e-15

>emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  109 bits (272), Expect = 3e-22
 Identities = 63/141 (44%), Positives = 92/141 (65%)
 Frame = +2

Query: 35  PSFEELPISSHNPTTLSHQFLELDTVGVVGILNSLKRKPDEAMSFFRQMNKHGFCHDVEC 214
           P  EE  + +++  ++  +F++L+T  VV I  +LK +P+ A SFF Q+ + GF H+V+ 
Sbjct: 39  PIAEEQAVYTYSKDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDT 98

Query: 215 YSAIVRILCGSGLERKLGSLFLELIRSKEKHPHFEVSALFKDLAESFGSNGEGEWSSPPL 394
           Y+A++R+LC   LERKL SL  E++ SKE    F+++ALF  L E  G   EGE SS  L
Sbjct: 99  YAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREG-GGEVEGEHSS-VL 156

Query: 395 NRVLDVLVKTYAELGMFDDAI 457
             VLD+LVK Y  +GMFD+AI
Sbjct: 157 ILVLDMLVKAYVRVGMFDEAI 177


>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  109 bits (272), Expect = 3e-22
 Identities = 63/141 (44%), Positives = 92/141 (65%)
 Frame = +2

Query: 35  PSFEELPISSHNPTTLSHQFLELDTVGVVGILNSLKRKPDEAMSFFRQMNKHGFCHDVEC 214
           P  EE  + +++  ++  +F++L+T  VV I  +LK +P+ A SFF Q+ + GF H+V+ 
Sbjct: 39  PIAEEQAVYTYSKDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDT 98

Query: 215 YSAIVRILCGSGLERKLGSLFLELIRSKEKHPHFEVSALFKDLAESFGSNGEGEWSSPPL 394
           Y+A++R+LC   LERKL SL  E++ SKE    F+++ALF  L E  G   EGE SS  L
Sbjct: 99  YAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREG-GGEVEGEHSS-VL 156

Query: 395 NRVLDVLVKTYAELGMFDDAI 457
             VLD+LVK Y  +GMFD+AI
Sbjct: 157 ILVLDMLVKAYVRVGMFDEAI 177


>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 913

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
 Frame = +2

Query: 89  QFLELDTVGVVGILNSLKRKPDEAMSFFRQMNKHGFCHDVECYSAIVRILCGSGLERKLG 268
           Q L+LD+  VV IL +LK +P  A+SFF Q+   GF HD+  Y+AI+RILC  GL ++L 
Sbjct: 60  QQLQLDSFKVVDILYNLKNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLR 119

Query: 269 SLFLELI--RSKEKHPHFEVSALFKDLAESFGSNGEGEWSSPPLNRVLDVLVKTYAELGM 442
           S+FL++I     +    FE+S     L++ F  + + +  S  +++V D LVK Y  +GM
Sbjct: 120 SIFLDIIYVSCNDNDTPFEISHFLDTLSDGF-VDVDSKKQSLFMSKVYDALVKAYVSVGM 178

Query: 443 FDDAI 457
           FDDAI
Sbjct: 179 FDDAI 183


>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 809

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 51/140 (36%), Positives = 78/140 (55%)
 Frame = +2

Query: 35  PSFEELPISSHNPTTLSHQFLELDTVGVVGILNSLKRKPDEAMSFFRQMNKHGFCHDVEC 214
           P  EE  I++H    +++   E++T  VV  LN+L+ +P  A S+F Q+ + G+ HD   
Sbjct: 35  PIEEEQTINTHYQNPVTNHLFEINTAKVVITLNNLRNEPSLAFSYFNQLKESGYSHDPYT 94

Query: 215 YSAIVRILCGSGLERKLGSLFLELIRSKEKHPHFEVSALFKDLAESFGSNGEGEWSSPPL 394
           Y+AIVRILC  G  RKL S+ +E+I+ K+ +  F +  LF+ L +   +      S   L
Sbjct: 95  YAAIVRILCFWGWSRKLDSILMEIIK-KDGNLDFGIVNLFEALGDGIANE-----SFSVL 148

Query: 395 NRVLDVLVKTYAELGMFDDA 454
            +V D L+K     GMFD A
Sbjct: 149 VQVSDALIKVCVASGMFDQA 168


>ref|NP_172835.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174769|sp|Q9LMH5.1|PPR42_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g13800 gi|8778410|gb|AAF79418.1|AC068197_28
           F16A14.3 [Arabidopsis thaliana]
           gi|332190949|gb|AEE29070.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 883

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 49/127 (38%), Positives = 74/127 (58%)
 Frame = +2

Query: 77  TLSHQFLELDTVGVVGILNSLKRKPDEAMSFFRQMNKHGFCHDVECYSAIVRILCGSGLE 256
           T  ++ LEL+ +GV+ +LNS+K  P  A+SF +++  +     V+ Y+ ++RI+CG GL+
Sbjct: 47  TFDYKALELNDIGVLRVLNSMKDDPYLALSFLKRIEGNVTLPSVQAYATVIRIVCGWGLD 106

Query: 257 RKLGSLFLELIRSKEKHPHFEVSALFKDLAESFGSNGEGEWSSPPLNRVLDVLVKTYAEL 436
           +KL +   EL+R  ++   F V  L K +       GE E S   L RV   LVK YA L
Sbjct: 107 KKLDTFLFELVRRGDEGRGFSVMDLLKAI-------GEMEQSLVLLIRVSTALVKAYANL 159

Query: 437 GMFDDAI 457
            MFD+AI
Sbjct: 160 DMFDEAI 166