BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040472
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containi...   185   4e-45
ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containi...   184   6e-45
emb|CBI36234.3| unnamed protein product [Vitis vinifera]              184   6e-45
ref|NP_173004.1| pentatricopeptide repeat-containing protein [Ar...   177   6e-43
ref|XP_002890108.1| pentatricopeptide repeat-containing protein ...   176   1e-42

>ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  185 bits (469), Expect = 4e-45
 Identities = 81/102 (79%), Positives = 94/102 (92%)
 Frame = +1

Query: 1   EERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGK 180
           E+R++FSWNV+VGGYAK+G FDEAL LYHRMLW GVKPDVYTFPCVLRTCGG+PNL  G+
Sbjct: 168 EKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGR 227

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           E+HVHV+R+GFE+DVDV NALITMY KCGDV++ARLVFD MP
Sbjct: 228 EIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMP 269



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 34/96 (35%), Positives = 52/96 (54%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           RD  SWN M+ GY ++G   E L L+  M+   V PD+ T   V+  C  + +   G+++
Sbjct: 271 RDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQI 330

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVF 294
           H +V+R  F  D  + N+LI MY+  G +  A  VF
Sbjct: 331 HGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVF 366



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 35/98 (35%), Positives = 47/98 (47%)
 Frame = +1

Query: 1   EERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGK 180
           E RD+ SW  M+ GY       +AL  Y  M   G+ PD  T   VL  C  + NL+ G 
Sbjct: 370 ECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM 429

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVF 294
            +H    + G  +   V N+LI MYAKC  +  A  +F
Sbjct: 430 NLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIF 467



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/93 (33%), Positives = 49/93 (52%)
 Frame = +1

Query: 4   ERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKE 183
           E+++ SW  ++ G   +    EAL  +  M+   +KP+  T  CVL  C  +  L  GKE
Sbjct: 472 EKNIVSWTSIILGLRINNRCFEALFFFREMI-RRLKPNSVTLVCVLSACARIGALTCGKE 530

Query: 184 VHVHVVRFGFEADVDVTNALITMYAKCGDVHSA 282
           +H H +R G   D  + NA++ MY +CG +  A
Sbjct: 531 IHAHALRTGVSFDGFMPNAILDMYVRCGRMEYA 563


>ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  184 bits (467), Expect = 6e-45
 Identities = 79/101 (78%), Positives = 94/101 (93%)
 Frame = +1

Query: 4   ERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKE 183
           ERD+FSWNV+VGGYAK+G+FDEAL+LYHRMLW G++PDVYTFPCVLRTCGG+P+L  G+E
Sbjct: 157 ERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGRE 216

Query: 184 VHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           VH+HV+R+GFE+DVDV NALITMY KCGD+ SARLVFD MP
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/102 (38%), Positives = 54/102 (52%)
 Frame = +1

Query: 1   EERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGK 180
           E +D+ SW  M+ GY K+G  ++A+  Y  M   GV PD  T   VL  C G+  L+ G 
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
            +H    R G  + V V N+LI MY+KC  +  A  VF  +P
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/99 (37%), Positives = 54/99 (54%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           RD  SWN M+ GY ++    E L L+  M    V PD+ T   V+  C  + +   G+EV
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGM 303
           H +V++ GF A+V V N+LI M++  G    A +VF  M
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/92 (33%), Positives = 49/92 (53%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           ++V SW  ++ G   +    EAL  + +M+ + +KP+  T   VL  C  +  L  GKE+
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSA 282
           H H +R G   D  + NAL+ MY +CG +  A
Sbjct: 520 HAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551


>emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  184 bits (467), Expect = 6e-45
 Identities = 79/101 (78%), Positives = 94/101 (93%)
 Frame = +1

Query: 4   ERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKE 183
           ERD+FSWNV+VGGYAK+G+FDEAL+LYHRMLW G++PDVYTFPCVLRTCGG+P+L  G+E
Sbjct: 157 ERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGRE 216

Query: 184 VHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           VH+HV+R+GFE+DVDV NALITMY KCGD+ SARLVFD MP
Sbjct: 217 VHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMP 257



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/102 (38%), Positives = 54/102 (52%)
 Frame = +1

Query: 1   EERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGK 180
           E +D+ SW  M+ GY K+G  ++A+  Y  M   GV PD  T   VL  C G+  L+ G 
Sbjct: 358 EFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI 417

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
            +H    R G  + V V N+LI MY+KC  +  A  VF  +P
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/99 (37%), Positives = 54/99 (54%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           RD  SWN M+ GY ++    E L L+  M    V PD+ T   V+  C  + +   G+EV
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGM 303
           H +V++ GF A+V V N+LI M++  G    A +VF  M
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKM 357



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/92 (33%), Positives = 49/92 (53%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           ++V SW  ++ G   +    EAL  + +M+ + +KP+  T   VL  C  +  L  GKE+
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSA 282
           H H +R G   D  + NAL+ MY +CG +  A
Sbjct: 520 HAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551


>ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
           gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein
           [Arabidopsis thaliana] gi|300825685|gb|ADK35876.1|
           chloroplast vanilla cream 1 [Arabidopsis thaliana]
           gi|332191210|gb|AEE29331.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  177 bits (450), Expect = 6e-43
 Identities = 80/102 (78%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   ERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAG-VKPDVYTFPCVLRTCGGVPNLESGK 180
           ER++FSWNV+VGGYAK G+FDEA+ LYHRMLW G VKPDVYTFPCVLRTCGG+P+L  GK
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGK 216

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           EVHVHVVR+G+E D+DV NALITMY KCGDV SARL+FD MP
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 34/99 (34%), Positives = 51/99 (51%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           RD+ SWN M+ GY ++G   E L L+  M    V PD+ T   V+  C  + +   G+++
Sbjct: 260 RDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDI 319

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGM 303
           H +V+  GF  D+ V N+L  MY   G    A  +F  M
Sbjct: 320 HAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRM 358



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/102 (34%), Positives = 53/102 (51%)
 Frame = +1

Query: 1   EERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGK 180
           E +D+ SW  M+ GY  +   D+A+  Y  M    VKPD  T   VL  C  + +L++G 
Sbjct: 359 ERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV 418

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           E+H   ++    + V V N LI MY+KC  +  A  +F  +P
Sbjct: 419 ELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/92 (32%), Positives = 50/92 (54%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           ++V SW  ++ G   +    EAL ++ R +   ++P+  T    L  C  +  L  GKE+
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEI 520

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSA 282
           H HV+R G   D  + NAL+ MY +CG +++A
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552


>ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335950|gb|EFH66367.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 866

 Score =  176 bits (447), Expect = 1e-42
 Identities = 79/102 (77%), Positives = 91/102 (89%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   ERDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAG-VKPDVYTFPCVLRTCGGVPNLESGK 180
           ER++FSWNV+VGGYAK G+FDEA+ LYHRMLW G VKPDVYTFPCVLRTCGG+P+L  G+
Sbjct: 157 ERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGR 216

Query: 181 EVHVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           EVHVHVVR+G+E D+DV NALITMY KCGDV SARL+FD MP
Sbjct: 217 EVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 34/99 (34%), Positives = 51/99 (51%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           RD+ SWN M+ GY ++G   E L L+  M    V PD+ T   V+  C  + +   G+++
Sbjct: 260 RDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDI 319

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGM 303
           H +V+  GF  D+ V N+L  MY   G    A  +F  M
Sbjct: 320 HAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRM 358



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 33/100 (33%), Positives = 52/100 (52%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           +D+ SW  M+ GY  +   ++A+  Y  M    VKPD  T   VL  C  + +L++G E+
Sbjct: 361 KDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVEL 420

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSARLVFDGMP 306
           H   ++    + V V N LI MY+KC  +  A  +F  +P
Sbjct: 421 HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP 460



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/92 (32%), Positives = 49/92 (53%)
 Frame = +1

Query: 7   RDVFSWNVMVGGYAKSGFFDEALSLYHRMLWAGVKPDVYTFPCVLRTCGGVPNLESGKEV 186
           ++V SW  ++ G   +    EAL ++ R +   ++P+  T    L  C  +  L  GKE+
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEAL-IFFRQMKMTLQPNAITLTAALAACARIGALMCGKEI 520

Query: 187 HVHVVRFGFEADVDVTNALITMYAKCGDVHSA 282
           H HV+R G   D  + NAL+ MY +CG ++ A
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNIA 552