BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040394
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO45752.1| pol protein [Cucumis melo subsp. melo]                 169   2e-40
gb|ABA97773.1| retrotransposon protein, putative, Ty3-gypsy subc...   167   6e-40
gb|AAX95261.1| retrotransposon protein, putative, Ty3-gypsy sub-...   167   8e-40
emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]        167   8e-40
gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subc...   166   2e-39

>gb|AAO45752.1| pol protein [Cucumis melo subsp. melo]
          Length = 923

 Score =  169 bits (428), Expect = 2e-40
 Identities = 75/107 (70%), Positives = 96/107 (89%)
 Frame = -1

Query: 323 PTVFMELMNRVFRDFLDRFIIVFIDDILIYSRTQEEHEEHLGVALQTLRDHQLFAKFEKC 144
           P VFM+LMNRVFR+FLD F+IVFIDDILIYS+T+ EHEEHL + LQTLRD++L+AKF KC
Sbjct: 123 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKC 182

Query: 143 DFWLREVQFLGHVISKDGISVDPSKVEAVLDWQQPTSVTEIRSFLGL 3
           +FWL++V FLGHV+SK G+SVDP+K+EAV  W +P++V+E+RSFLGL
Sbjct: 183 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGL 229


>gb|ABA97773.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 930

 Score =  167 bits (424), Expect = 6e-40
 Identities = 75/107 (70%), Positives = 94/107 (87%)
 Frame = -1

Query: 323 PTVFMELMNRVFRDFLDRFIIVFIDDILIYSRTQEEHEEHLGVALQTLRDHQLFAKFEKC 144
           P  FM LMN+VF ++LD+F++VFIDDILIYS+T+EEHEEHL +AL+ LR+HQL+AKF KC
Sbjct: 123 PAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKC 182

Query: 143 DFWLREVQFLGHVISKDGISVDPSKVEAVLDWQQPTSVTEIRSFLGL 3
           +FWL EV+FLGHVIS  G++VDPS VE+VL W+QP +VTEIRSFLGL
Sbjct: 183 EFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVTEIRSFLGL 229


>gb|AAX95261.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|62733825|gb|AAX95934.1|
           retrotransposon protein, putative, Ty3-gypsy sub-class
           [Oryza sativa Japonica Group] gi|77550593|gb|ABA93390.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1398

 Score =  167 bits (423), Expect = 8e-40
 Identities = 75/107 (70%), Positives = 95/107 (88%)
 Frame = -1

Query: 323 PTVFMELMNRVFRDFLDRFIIVFIDDILIYSRTQEEHEEHLGVALQTLRDHQLFAKFEKC 144
           PT FM LMN+VF ++LD+F++VFIDDILIYSRT+EEHEEHL +AL+ LR+HQL+AKF KC
Sbjct: 637 PTFFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKC 696

Query: 143 DFWLREVQFLGHVISKDGISVDPSKVEAVLDWQQPTSVTEIRSFLGL 3
           +FWL EV+FLGHVIS  G++VDPS VE+V +W+QP +V+EIRSFLGL
Sbjct: 697 EFWLSEVKFLGHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGL 743


>emb|CAD40090.2| OSJNBb0012A12.12 [Oryza sativa Japonica Group]
          Length = 1581

 Score =  167 bits (423), Expect = 8e-40
 Identities = 74/107 (69%), Positives = 95/107 (88%)
 Frame = -1

Query: 323  PTVFMELMNRVFRDFLDRFIIVFIDDILIYSRTQEEHEEHLGVALQTLRDHQLFAKFEKC 144
            PT+FM LMN+VF ++LD+F++VFIDDILIYSRT+EEHEEHL +AL+ LR+HQL+AKF KC
Sbjct: 774  PTIFMNLMNKVFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEKLREHQLYAKFSKC 833

Query: 143  DFWLREVQFLGHVISKDGISVDPSKVEAVLDWQQPTSVTEIRSFLGL 3
            +FWL EV+FLGHVIS  G++VDPS VE + +W+QP +V+EIRSFLGL
Sbjct: 834  EFWLSEVKFLGHVISAGGVAVDPSNVEFITNWKQPKTVSEIRSFLGL 880


>gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1778

 Score =  166 bits (420), Expect = 2e-39
 Identities = 74/107 (69%), Positives = 94/107 (87%)
 Frame = -1

Query: 323  PTVFMELMNRVFRDFLDRFIIVFIDDILIYSRTQEEHEEHLGVALQTLRDHQLFAKFEKC 144
            P  FM LMN+VF ++LD+F++VFIDDILIYS+T+EEHEEHL +AL+ LR+HQL+AKF KC
Sbjct: 971  PAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKC 1030

Query: 143  DFWLREVQFLGHVISKDGISVDPSKVEAVLDWQQPTSVTEIRSFLGL 3
            +FWL EV+FLGHVIS  G++VDPS VE+VL W+QP +V+EIRSFLGL
Sbjct: 1031 EFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGL 1077