BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040319
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   123   1e-26
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   111   7e-23
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...    92   6e-17
ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  123 bits (309), Expect = 1e-26
 Identities = 58/102 (56%), Positives = 74/102 (72%)
 Frame = -2

Query: 308 QLNDIGIKVLNLIKTSKSPFHLRQIQAQIILRNLHPNSTITSHFINTCQSLGLLDTALLL 129
           +LN    K LNL+    SP H+ QIQAQ+I++NLH N+TI  HFI  CQSLGLLD+ALLL
Sbjct: 6   RLNPRVTKFLNLLTNCCSPCHIHQIQAQLIVQNLHSNTTIAHHFITACQSLGLLDSALLL 65

Query: 128 FHQIHTPHVFICNTIIKAFTHSHSPQTSISLYARVHRNSISP 3
           F     PHVFICN++I+AF+H+H+P T  S+Y  +H NSI P
Sbjct: 66  FTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILP 107


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  111 bits (277), Expect = 7e-23
 Identities = 52/95 (54%), Positives = 68/95 (71%)
 Frame = -2

Query: 287 KVLNLIKTSKSPFHLRQIQAQIILRNLHPNSTITSHFINTCQSLGLLDTALLLFHQIHTP 108
           ++L++  TS SP H+ QIQAQ+IL+NLH +  I  HFINTC  L LL +A L F  I  P
Sbjct: 14  RILSIFTTSLSPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKP 73

Query: 107 HVFICNTIIKAFTHSHSPQTSISLYARVHRNSISP 3
           HVFICN++I+AF+HS  P T + LY  ++RNSISP
Sbjct: 74  HVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISP 108


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  110 bits (276), Expect = 9e-23
 Identities = 52/95 (54%), Positives = 67/95 (70%)
 Frame = -2

Query: 287 KVLNLIKTSKSPFHLRQIQAQIILRNLHPNSTITSHFINTCQSLGLLDTALLLFHQIHTP 108
           ++L +  TS SP H+ QIQAQ+IL+NLH +  I  HFINTC  L LL +A L F  I  P
Sbjct: 14  RILTIFTTSLSPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLFFTHIPKP 73

Query: 107 HVFICNTIIKAFTHSHSPQTSISLYARVHRNSISP 3
           HVFICN++I+AF+HS  P T + LY  ++RNSISP
Sbjct: 74  HVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISP 108


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 47/97 (48%), Positives = 67/97 (69%), Gaps = 2/97 (2%)
 Frame = -2

Query: 287 KVLNLIKT-SKSPFHLRQIQAQIILRNLHPNSTITSHFINTCQSLGLLDTALLLF-HQIH 114
           +V+ L+K+  ++  H++QIQAQII+ NL  ++TI  H I   QS  LL+    LF H I 
Sbjct: 11  RVVKLLKSFCRTQIHVKQIQAQIIIHNLQSHTTIAEHLITASQSHNLLNYVSPLFTHLIP 70

Query: 113 TPHVFICNTIIKAFTHSHSPQTSISLYARVHRNSISP 3
            PHVFI N++I+AF+HSH P T +SLY+ +H+NSI P
Sbjct: 71  KPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILP 107


>ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
           gi|297739328|emb|CBI28979.3| unnamed protein product
           [Vitis vinifera]
          Length = 585

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
 Frame = -2

Query: 344 QSSPNMAQKVPSQLNDIGIKVLNLIKTSKSPFHLRQIQAQIILRNLHPNSTITSHFINTC 165
           QS+P +  K P         +L+L++ SK+   + QI AQ+I  NL  ++   S  +++ 
Sbjct: 3   QSTPKLQLKNP---------LLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSV 53

Query: 164 QSLGL-LDTALLLFHQIHTPHVFICNTIIKAFTHSHSPQTSISLYARVHRNSI 9
            S  L ++ A L+F QIH P+ FICNT++K +T S +P+ ++  YA + R  +
Sbjct: 54  VSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGL 106