BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040311
         (257 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...    52   9e-11
dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polypro...    52   9e-11
emb|CAN79339.1| hypothetical protein VITISV_044312 [Vitis vinifera]    45   1e-07
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]    45   3e-07
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]    45   3e-07

>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score = 52.4 bits (124), Expect(2) = 9e-11
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = -3

Query: 255 KKDADKHRRLKIIEVGEYVMIYLRRKSFLPNTYHKTKMKKYVPFKVLQK 109
           K  ADK RR K+ + G+ VM+ LR+  F   TY+K K +KY PFKVL+K
Sbjct: 177 KVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRKYGPFKVLRK 225



 Score = 38.9 bits (89), Expect(2) = 9e-11
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 127 FQSFTKIKDNAYVIDLPSNFNISLPFNAADI 35
           F+   KI DNAYV+ LP + NIS  FN ADI
Sbjct: 220 FKVLRKINDNAYVVALPKSMNISNTFNVADI 250


>dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 127

 Score = 52.4 bits (124), Expect(2) = 9e-11
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = -3

Query: 255 KKDADKHRRLKIIEVGEYVMIYLRRKSFLPNTYHKTKMKKYVPFKVLQK 109
           K  ADK RR K+ + G+ VM+ LR+  F   TY+K K +KY PFKVL+K
Sbjct: 24  KVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRKYGPFKVLRK 72



 Score = 38.9 bits (89), Expect(2) = 9e-11
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 127 FQSFTKIKDNAYVIDLPSNFNISLPFNAADI 35
           F+   KI DNAYV+ LP + NIS  FN ADI
Sbjct: 67  FKVLRKINDNAYVVALPKSMNISNTFNVADI 97


>emb|CAN79339.1| hypothetical protein VITISV_044312 [Vitis vinifera]
          Length = 354

 Score = 45.1 bits (105), Expect(2) = 1e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 255 KKDADKHRRLKIIEVGEYVMIYLRRKSFLPNTYHKTKMKKYVPFKVLQK 109
           K+ AD HRR    + G+ VM+ LR + F P+TY K + KK  PF+VL++
Sbjct: 171 KEAADAHRRYIQFQEGDLVMVRLRPERFHPSTYQKLQAKKAGPFQVLKR 219



 Score = 35.8 bits (81), Expect(2) = 1e-07
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -2

Query: 127 FQSFTKIKDNAYVIDLPSNFNISLPFNAADICVFMG 20
           FQ   ++ +NAY+++LPSN + S  FN  D+ ++ G
Sbjct: 214 FQVLKRLGENAYLLELPSNLHFSPIFNVEDLYIYHG 249


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 255  KKDADKHRRLKIIEVGEYVMIYLRRKSFLPNTYHKTKMKKYVPFKVLQK 109
            K+ AD HRR    + G+ VM+ LR + F P+TY K + KK  PF+VL++
Sbjct: 1338 KEAADAHRRYIQFQEGDLVMVRLRPERFHPSTYQKLQAKKAGPFRVLKR 1386



 Score = 33.9 bits (76), Expect(2) = 3e-07
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 127  FQSFTKIKDNAYVIDLPSNFNISLPFNAADICVFMG 20
            F+   ++ +NAY+++LPSN + S  FN  D+ ++ G
Sbjct: 1381 FRVLKRLGENAYLLELPSNLHFSPIFNVEDLHIYHG 1416


>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
          Length = 1392

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 255  KKDADKHRRLKIIEVGEYVMIYLRRKSFLPNTYHKTKMKKYVPFKVLQK 109
            K+ AD HRR    + G+ VM+ LR + F P+TY K + KK  PF+VL++
Sbjct: 1209 KEAADAHRRYIQFQEGDLVMVRLRPERFHPSTYQKLQAKKAGPFRVLKR 1257



 Score = 33.9 bits (76), Expect(2) = 3e-07
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 127  FQSFTKIKDNAYVIDLPSNFNISLPFNAADICVFMG 20
            F+   ++ +NAY+++LPSN + S  FN  D+ ++ G
Sbjct: 1252 FRVLKRLGENAYLLELPSNLHFSPIFNVEDLHIYHG 1287