BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040294
         (499 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,...   130   8e-29
ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. l...   115   4e-24
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar...   115   4e-24
ref|XP_003608278.1| Pentatricopeptide repeat-containing protein ...    99   3e-19

>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
           protein product [Vitis vinifera]
          Length = 878

 Score =  134 bits (336), Expect = 1e-29
 Identities = 75/153 (49%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
 Frame = +1

Query: 52  MDQTTSKLIKALLNNTNNPSVSWHFFXXXXXXXXXXXXXXXXXI----PTIARILISSKM 219
           MDQ  +KL KAL+ NT+NP+++WH F                 I    P I  ILI +KM
Sbjct: 1   MDQR-NKLTKALIKNTHNPTLAWHLFKRILSIPTSSSSISSRSILRSIPIITHILIRAKM 59

Query: 220 LSEIDXXXXXXXXXPPKVSRLSLMALAHTSAKSGLFDKALSQFQSLRSHFPNQPPSIHLY 399
           +S+ID         P +VS +SL+AL    AKSGL D A SQFQS RS  P  PP ++LY
Sbjct: 60  ISQIDHLQQLLLQQPQEVSHVSLIALIRILAKSGLSDLAFSQFQSFRSQVPANPPPVYLY 119

Query: 400 NVLLESSLRENKVEFVSELYKDMLLAGISPETY 498
           N++LESSLRE+KV+  S LYKDM++AG+SPETY
Sbjct: 120 NMVLESSLREDKVDSFSWLYKDMVVAGVSPETY 152


>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 874

 Score =  130 bits (328), Expect = 8e-29
 Identities = 77/150 (51%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = +1

Query: 52  MDQTTSKLIKALLNNTNNPSVSWHFFXXXXXXXXXXXXXXXXXIPTIARILISSKMLSEI 231
           MD TT KL KALLNN +NP ++WH F                 IP I+RILI SKM +E+
Sbjct: 1   MDPTT-KLTKALLNNAHNPKLAWHLFKRILSLPISSNHRSQS-IPIISRILIRSKMFNEL 58

Query: 232 DXXXXXXXXXPP-KVSRLSLMALAHTSAKSGLFDKALSQFQSLRSHFPNQPPSIHLYNVL 408
           D         P  + S  SL  L    AKSG F+KA+S F+SLRS+FP + PSI+LYNVL
Sbjct: 59  DDLHQLLLNSPSLESSDSSLENLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVL 118

Query: 409 LESSLRENKVEFVSELYKDMLLAGISPETY 498
           L+S +REN+VE VS LYKDM+LA +SPE Y
Sbjct: 119 LKSCIRENRVELVSWLYKDMVLARVSPEAY 148


>ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 874

 Score =  115 bits (288), Expect = 4e-24
 Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
 Frame = +1

Query: 73  LIKALLNNTNNPSVSWHFFXXXXXXXXXXXXXXXXXI-PTIARILISSKMLSEIDXXXXX 249
           L+KALL NTNNP ++W  F                   PT+A IL+ +KM  EI+     
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLAATPTMACILVRAKMHEEIEELHNL 64

Query: 250 XXXXPPKVSRLS-LMALAHTSAKSGLFDKALSQFQSLRSHFPNQPPSIHLYNVLLESSLR 426
                 + ++LS L+++    AKS   DKA  QFQ +RS FP   P I+LYNVLLES +R
Sbjct: 65  ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIR 124

Query: 427 ENKVEFVSELYKDMLLAGISPETY 498
           E +VEFVS LYKDM+L GISPETY
Sbjct: 125 ERRVEFVSWLYKDMVLCGISPETY 148


>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|330251496|gb|AEC06590.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  115 bits (288), Expect = 4e-24
 Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
 Frame = +1

Query: 73  LIKALLNNTNNPSVSWHFFXXXXXXXXXXXXXXXXXI-PTIARILISSKMLSEIDXXXXX 249
           L+KALL NTNNP ++W  F                   PTIARIL+ +KM  EI      
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQELHNL 64

Query: 250 XXXXPPKVSRLS-LMALAHTSAKSGLFDKALSQFQSLRSHFPNQPPSIHLYNVLLESSLR 426
                 + ++LS L+++    AKS   DKA  QFQ +RS FP   PS++LYN+LLES ++
Sbjct: 65  ILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIK 124

Query: 427 ENKVEFVSELYKDMLLAGISPETY 498
           E +VEFVS LYKDM+L GI+P+TY
Sbjct: 125 ERRVEFVSWLYKDMVLCGIAPQTY 148


>ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359684|gb|ABD32353.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355509333|gb|AES90475.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 870

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
 Frame = +1

Query: 52  MDQTTSKLIKALLNNTNNPSVSWHFFXXXXXXXXXXXXXXXXX--------IPTIARILI 207
           M++TT KLIK++  NTNNP ++WH F                         IPTI RIL+
Sbjct: 1   MEETTRKLIKSIHQNTNNPKLAWHLFKRILSSSPSSSSSSSSSSSSHHHHLIPTITRILL 60

Query: 208 SSKMLSEIDXXXXXXXXXPPKVSRLSLMALAHTSAKSGLFDKALSQFQSLRSHFPNQPPS 387
              M +EI+            +S L+++     S      D A S F+SLR+HFP+ P  
Sbjct: 61  RHNMDNEINHLFQLTTSHHSHISILNIL-----SQSPHHLDFAFSHFKSLRTHFPSTPLP 115

Query: 388 IHLYNVLLESSLRENKVEFVSELYKDMLLAGISPETY 498
           + LY++LL SSL++N+  +V+ LY DM+  G++PETY
Sbjct: 116 LQLYHLLLRSSLQQNRPHYVTSLYTDMIQTGVNPETY 152