BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00040202
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...   124   8e-27
ref|NP_001031033.1| pentatricopeptide repeat-containing protein ...   121   5e-26
dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]        118   4e-25
ref|NP_188886.1| pentatricopeptide repeat-containing protein [Ar...   118   4e-25
ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|2...   117   1e-24

>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score =  124 bits (311), Expect = 8e-27
 Identities = 56/102 (54%), Positives = 76/102 (74%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  TYN L+DGYCLH Q +EA KVFD+MV +G  PDV+++N LI GYCK++ +DEA +L
Sbjct: 417 PNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQL 476

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQGH 317
           F  M+ KGLTP++ T+  LI GLC+AGR   A++LF+ M  H
Sbjct: 477 FDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSH 518



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 43/102 (42%), Positives = 67/102 (65%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+ P   T+++ +D +C  G   EA  + +LM+ RG  P+VV +NSL++GYC    +DEA
Sbjct: 379 NIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEA 438

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++F  M +KG  PD  +YNILI G CK+ R+  A++LF++M
Sbjct: 439 RKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEM 480



 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 41/101 (40%), Positives = 59/101 (58%)
 Frame = +3

Query: 9   APSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAME 188
           AP   +YN+LI GYC   + +EA ++FD M  +G  P+ +   +LI+G C+A     A E
Sbjct: 451 APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKE 510

Query: 189 LFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           LF+ M S G  PD  TY+ L+ G CK G +  A  LFE ++
Sbjct: 511 LFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 38/102 (37%), Positives = 57/102 (55%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+ P   T+++L+D  C  G   EA+ VF  M+    EPD+V ++SLI+G CK+    E+
Sbjct: 309 NMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
             L   M S+ + PD  T++I +D  CK G V  AQ +   M
Sbjct: 369 STLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLM 410



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 37/99 (37%), Positives = 63/99 (63%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+ +T+ ++++G C  G+T  A+     MV    EP+VV+++ +I+  CK + V+EA++L
Sbjct: 207 PTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDL 266

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           F  M S G++P   TYN LI G+C +G+   A  LF++M
Sbjct: 267 FYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/99 (38%), Positives = 54/99 (54%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   +Y+++ID  C +    EAV +F  M   G  P VV +NSLI G C +    +A  L
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           F+ M    + PD  T++IL+D LCK G V+ A  +F  M
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/100 (35%), Positives = 53/100 (53%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           PS  T+N LI+G C+ G+  EA++  D ++ RG +P V     ++NG CK      A+  
Sbjct: 172 PSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVW 231

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
            + M      P+  +Y+I+ID LCK   V  A  LF  M+
Sbjct: 232 MKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMR 271



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 37/101 (36%), Positives = 56/101 (55%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           ++P+  TYN LI G C  GQ ++A  +F  M+    +PDVV F+ L++  CK   V EA+
Sbjct: 275 ISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEAL 334

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            +F  M    + PD  TY+ LI G+CK+     +  L  +M
Sbjct: 335 SVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 35/99 (35%), Positives = 54/99 (54%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   TY+ LI G C     +E+  + + M+ R   PDVV F+  ++ +CK   V EA  +
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSI 406

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
              M  +GL P+  TYN L+DG C   ++  A+K+F+ M
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIM 445



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/94 (31%), Positives = 49/94 (52%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V+ S +T  +LI+  C          V   +   G +P ++ FN+LING C    + EAM
Sbjct: 135 VSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAM 194

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVA 287
           E    + S+G  P  +T+ ++++GLCK G+   A
Sbjct: 195 EQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 42/72 (58%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   TY+ L+ G+C HG  +EA+ +F+ +     +P+ V    L+ G CKA  +++A EL
Sbjct: 522 PDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKEL 581

Query: 192 FRGMNSKGLTPD 227
           F  ++ + L PD
Sbjct: 582 FSSLSIEELQPD 593


>ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
           gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity
           to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
           gi|332190806|gb|AEE28927.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  121 bits (304), Expect = 5e-26
 Identities = 50/101 (49%), Positives = 77/101 (76%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           +AP+T TYN LIDG+C   + EEA+++ DLM+ +G +PD++ FN LINGYCKA  +D+ +
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           ELFR M+ +G+  +  TYN L+ G C++G++ VA+KLF++M
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464



 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 41/101 (40%), Positives = 66/101 (65%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           ++P+  T++VLID +   G+  EA ++   M+ RG  P+ + +NSLI+G+CK   ++EA+
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           ++   M SKG  PD  T+NILI+G CKA R+    +LF +M
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM 429



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 39/100 (39%), Positives = 59/100 (59%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  T N L++G CL+G+  +AV + D MV  G +P+ V +  ++N  CK+     AMEL
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
            R M  + +  D   Y+I+IDGLCK G +  A  LF +M+
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 34/96 (35%), Positives = 61/96 (63%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   T+N+LI+GYC   + ++ +++F  M  RG   + V +N+L+ G+C++  ++ A +L
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLF 299
           F+ M S+ + PD  +Y IL+DGLC  G +  A ++F
Sbjct: 461 FQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIF 496



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 33/100 (33%), Positives = 57/100 (57%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P T  +N L++G CL  +  EA+++ D MV  G +P ++  N+L+NG C    V +A+ L
Sbjct: 156 PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVL 215

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
              M   G  P+  TY  +++ +CK+G+  +A +L   M+
Sbjct: 216 IDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME 255



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+      Y+++IDG C  G  + A  +F+ M  +G + D++ +N+LI G+C A   D+ 
Sbjct: 258 NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG 317

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            +L R M  + ++P+  T+++LID   K G++  A +L ++M
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 36/95 (37%), Positives = 56/95 (58%)
 Frame = +3

Query: 24  TYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRGM 203
           TYN LI G+C  G+ ++  K+   M+ R   P+VV F+ LI+ + K   + EA +L + M
Sbjct: 300 TYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEM 359

Query: 204 NSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
             +G+ P+  TYN LIDG CK  R+  A ++ + M
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 36/98 (36%), Positives = 56/98 (57%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V  +T TYN L+ G+C  G+ E A K+F  MV R   PD+V++  L++G C    +++A+
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLF 299
           E+F  +    +  D   Y I+I G+C A +V  A  LF
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 38/99 (38%), Positives = 52/99 (52%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  TY  +++  C  GQT  A+++   M  R  + D V ++ +I+G CK  ++D A  L
Sbjct: 226 PNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNL 285

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           F  M  KG   D  TYN LI G C AGR     KL  DM
Sbjct: 286 FNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V P   +Y +L+DG C +G+ E+A+++F  +     E D+  +  +I+G C A  VD+A 
Sbjct: 469 VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAW 528

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM--QGH 317
           +LF  +  KG+  D   YNI+I  LC+   +  A  LF  M  +GH
Sbjct: 529 DLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGH 574



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/101 (35%), Positives = 53/101 (52%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           +A S +T +++I+ +C   +   A      ++  G EPD V FN+L+NG C    V EA+
Sbjct: 119 IAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEAL 178

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           EL   M   G  P   T N L++GLC  G+V  A  L + M
Sbjct: 179 ELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRM 219


>dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/101 (52%), Positives = 74/101 (73%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           +AP T TYN LIDG+C      EA ++FDLMV +G EPD+V ++ LIN YCKAK VD+ M
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            LFR ++SKGL P+  TYN L+ G C++G++  A++LF++M
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 475



 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/102 (39%), Positives = 61/102 (59%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V PS  TY +L+DG C +G+  +A+++F+ M        +  +N +I+G C A  VD+A 
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 539

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
            LF  ++ KG+ PD  TYN++I GLCK G +  A  LF  M+
Sbjct: 540 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 581



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 41/100 (41%), Positives = 58/100 (58%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P T T++ L++G+CL G+  EAV + D MV   Q PD+V  ++LING C    V EA+ L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
              M   G  PD  TY  +++ LCK+G   +A  LF  M+
Sbjct: 227 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 266



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/95 (41%), Positives = 58/95 (61%)
 Frame = +3

Query: 24  TYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRGM 203
           TY+ LI G C  G+ ++  K+   M+GR   PDVV F++LI+ + K   + EA EL+  M
Sbjct: 311 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370

Query: 204 NSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++G+ PD  TYN LIDG CK   +  A ++F+ M
Sbjct: 371 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 37/95 (38%), Positives = 57/95 (60%)
 Frame = +3

Query: 27  YNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRGMN 206
           YN++I G C   + ++A  +F  +  +G +PDVV +N +I G CK  ++ EA  LFR M 
Sbjct: 522 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 581

Query: 207 SKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
             G TPD+FTYNILI        ++ + +L E+M+
Sbjct: 582 EDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMK 616



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/96 (38%), Positives = 55/96 (57%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+T TYN L+ G+C  G+   A ++F  MV RG  P VV +  L++G C    +++A+E+
Sbjct: 447 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 506

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLF 299
           F  M    +T     YNI+I G+C A +V  A  LF
Sbjct: 507 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 542



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/100 (38%), Positives = 56/100 (56%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   T + LI+G CL G+  EA+ + D MV  G +PD V +  ++N  CK+ N   A++L
Sbjct: 202 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 261

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           FR M  + +      Y+I+ID LCK G    A  LF +M+
Sbjct: 262 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 301



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/102 (32%), Positives = 60/102 (58%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+  S   Y+++ID  C  G  ++A+ +F+ M  +G + DVV ++SLI G C     D+ 
Sbjct: 269 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 328

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++ R M  + + PD  T++ LID   K G+++ A++L+ +M
Sbjct: 329 AKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 370



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/96 (35%), Positives = 48/96 (50%)
 Frame = +3

Query: 21  FTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRG 200
           +T  ++I+ YC   +   A  V       G EPD + F++L+NG+C    V EA+ L   
Sbjct: 135 YTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 194

Query: 201 MNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           M      PD  T + LI+GLC  GRV  A  L + M
Sbjct: 195 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 230


>ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
           gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis
           thaliana] gi|51968798|dbj|BAD43091.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332643122|gb|AEE76643.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  118 bits (296), Expect = 4e-25
 Identities = 53/101 (52%), Positives = 74/101 (73%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           +AP T TYN LIDG+C      EA ++FDLMV +G EPD+V ++ LIN YCKAK VD+ M
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            LFR ++SKGL P+  TYN L+ G C++G++  A++LF++M
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446



 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 40/102 (39%), Positives = 61/102 (59%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V PS  TY +L+DG C +G+  +A+++F+ M        +  +N +I+G C A  VD+A 
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
            LF  ++ KG+ PD  TYN++I GLCK G +  A  LF  M+
Sbjct: 511 SLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 41/100 (41%), Positives = 58/100 (58%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P T T++ L++G+CL G+  EAV + D MV   Q PD+V  ++LING C    V EA+ L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
              M   G  PD  TY  +++ LCK+G   +A  LF  M+
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/95 (41%), Positives = 58/95 (61%)
 Frame = +3

Query: 24  TYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRGM 203
           TY+ LI G C  G+ ++  K+   M+GR   PDVV F++LI+ + K   + EA EL+  M
Sbjct: 282 TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341

Query: 204 NSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++G+ PD  TYN LIDG CK   +  A ++F+ M
Sbjct: 342 ITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 37/95 (38%), Positives = 57/95 (60%)
 Frame = +3

Query: 27  YNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRGMN 206
           YN++I G C   + ++A  +F  +  +G +PDVV +N +I G CK  ++ EA  LFR M 
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK 552

Query: 207 SKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
             G TPD+FTYNILI        ++ + +L E+M+
Sbjct: 553 EDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMK 587



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/96 (38%), Positives = 55/96 (57%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+T TYN L+ G+C  G+   A ++F  MV RG  P VV +  L++G C    +++A+E+
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLF 299
           F  M    +T     YNI+I G+C A +V  A  LF
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLF 513



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/100 (38%), Positives = 56/100 (56%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P   T + LI+G CL G+  EA+ + D MV  G +PD V +  ++N  CK+ N   A++L
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           FR M  + +      Y+I+ID LCK G    A  LF +M+
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/102 (32%), Positives = 60/102 (58%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+  S   Y+++ID  C  G  ++A+ +F+ M  +G + DVV ++SLI G C     D+ 
Sbjct: 240 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 299

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++ R M  + + PD  T++ LID   K G+++ A++L+ +M
Sbjct: 300 AKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEM 341



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/96 (35%), Positives = 48/96 (50%)
 Frame = +3

Query: 21  FTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMELFRG 200
           +T  ++I+ YC   +   A  V       G EPD + F++L+NG+C    V EA+ L   
Sbjct: 106 YTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165

Query: 201 MNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
           M      PD  T + LI+GLC  GRV  A  L + M
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201


>ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|222858316|gb|EEE95863.1|
           predicted protein [Populus trichocarpa]
          Length = 555

 Score =  117 bits (292), Expect = 1e-24
 Identities = 53/104 (50%), Positives = 74/104 (71%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           V P   TYN L++GYCL  +  EA KVF++M+ +G+ PDV +F+ L+NGYCKAK +DEA 
Sbjct: 332 VEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAK 391

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQGH 317
           +LF  M  +GL PD  +YN LI GLC+A R + A++LF+DM  +
Sbjct: 392 QLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 44/102 (43%), Positives = 64/102 (62%)
 Frame = +3

Query: 3   NVAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEA 182
           N+ P    ++VLID  C  G+  EA  +   M   G EPDV  +N+L+NGYC    V EA
Sbjct: 296 NIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEA 355

Query: 183 MELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            ++F  M SKG  PD F+++IL++G CKA R+  A++LF++M
Sbjct: 356 RKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEM 397



 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 43/100 (43%), Positives = 66/100 (66%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P  F++++L++GYC   + +EA ++FD M  RG  PD V++N+LI+G C+A+   EA EL
Sbjct: 369 PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEEL 428

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           F+ M+S G  P+  TY+IL+D L K G +  A  LF  M+
Sbjct: 429 FKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAME 468



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 36/101 (35%), Positives = 60/101 (59%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  T++ LI+G+C+ G+   A+++FD+MV RG +P+V +++ +I G C+     E ++L
Sbjct: 159 PNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQG 314
              M   G  PD   YN ++D LCK   V  A  +F  M+G
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKG 259



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 58/100 (58%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  TY++L+D     G  ++A+ +F  M   G +PD+V +N +I+G CK     +A EL
Sbjct: 439 PNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDAREL 498

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           F  ++ KGL P+N+     IDG+CK G +  A K F  M+
Sbjct: 499 FAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQME 538



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/101 (37%), Positives = 59/101 (58%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P+  +Y+++I G C  G+T E +K+ + M   G EPDVV +N++++  CK + V+EA+ +
Sbjct: 194 PNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHI 253

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQG 314
           F  M   G+ P   TY  LI GL   GR   A  L  +M+G
Sbjct: 254 FCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/102 (31%), Positives = 57/102 (55%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           ++    +  +LI+ +C     +    V   ++  G EP+V+ F++LING+C    +  A+
Sbjct: 122 ISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAI 181

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDMQ 311
           ELF  M ++G  P+  +Y+I+I GLC+ G+     KL E M+
Sbjct: 182 ELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMK 223



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 39/101 (38%), Positives = 55/101 (54%)
 Frame = +3

Query: 6   VAPSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAM 185
           + P+  TY  LI G    G+ +EA  + + M G    PD+V F+ LI+  CK   V EA 
Sbjct: 262 ILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEAR 321

Query: 186 ELFRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
            + + M   G+ PD  TYN L++G C    VV A+K+FE M
Sbjct: 322 VILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVM 362



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/99 (34%), Positives = 47/99 (47%)
 Frame = +3

Query: 12  PSTFTYNVLIDGYCLHGQTEEAVKVFDLMVGRGQEPDVVNFNSLINGYCKAKNVDEAMEL 191
           P    YN ++D  C      EAV +F  M G G  P VV + SLI+G        EA  L
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGL 288

Query: 192 FRGMNSKGLTPDNFTYNILIDGLCKAGRVVVAQKLFEDM 308
              M    + PD   +++LID +CK G V  A+ + + M
Sbjct: 289 LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTM 327