BLASTX nr result

ID: Cimicifuga21_contig00039733 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039733
         (219 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606910.1| Glycine-rich RNA binding protein [Medicago t...    84   1e-14
gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x...    84   2e-14
gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indi...    84   2e-14
gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subc...    84   2e-14
ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group] g...    84   2e-14

>ref|XP_003606910.1| Glycine-rich RNA binding protein [Medicago truncatula]
           gi|355507965|gb|AES89107.1| Glycine-rich RNA binding
           protein [Medicago truncatula]
          Length = 161

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 38/44 (86%), Positives = 42/44 (95%)
 Frame = -2

Query: 134 MSDVEYRCFVGGLAWATDDHSLEKAFSTYGDIVDSKIINDRETG 3
           M+DVEYRCFVGGLAWATD+ +LEKAFS YG+IVDSKIINDRETG
Sbjct: 1   MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETG 44


>gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
           gi|2267569|gb|AAB63582.1| glycine-rich RNA binding
           protein 2 [Pelargonium x hortorum]
          Length = 166

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 36/43 (83%), Positives = 42/43 (97%)
 Frame = -2

Query: 131 SDVEYRCFVGGLAWATDDHSLEKAFSTYGDIVDSKIINDRETG 3
           +DVEYRCFVGGLAWATDDH+LE+AFS YG++V+SKIINDRETG
Sbjct: 4   ADVEYRCFVGGLAWATDDHALEQAFSQYGEVVESKIINDRETG 46


>gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
          Length = 139

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = -2

Query: 128 DVEYRCFVGGLAWATDDHSLEKAFSTYGDIVDSKIINDRETG 3
           DVEYRCFVGGLAWATDD SLE AFSTYG+I+DSKIINDRETG
Sbjct: 5   DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETG 46


>gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 153

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = -2

Query: 128 DVEYRCFVGGLAWATDDHSLEKAFSTYGDIVDSKIINDRETG 3
           DVEYRCFVGGLAWATDD SLE AFSTYG+I+DSKIINDRETG
Sbjct: 5   DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETG 46


>ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
           gi|108710321|gb|ABF98116.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group] gi|113549341|dbj|BAF12784.1|
           Os03g0670700 [Oryza sativa Japonica Group]
          Length = 196

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = -2

Query: 128 DVEYRCFVGGLAWATDDHSLEKAFSTYGDIVDSKIINDRETG 3
           DVEYRCFVGGLAWATDD SLE AFSTYG+I+DSKIINDRETG
Sbjct: 5   DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETG 46


Top