BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039712
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79625.1| hypothetical protein VITISV_035899 [Vitis vinifera]    52   9e-13
gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...    49   7e-08
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    40   1e-07
dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polypro...    49   2e-07
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                          38   8e-07

>emb|CAN79625.1| hypothetical protein VITISV_035899 [Vitis vinifera]
          Length = 866

 Score = 52.4 bits (124), Expect(3) = 9e-13
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = -2

Query: 176 DNAYMIDFPSKFNISNTFNVVDIFALYGDDDFALPHINMRSCRSEEDGTDA 24
           DNAY ID  +  NISNTFNVVD+F  +  D+F+L   N+R    + +G DA
Sbjct: 811 DNAYKIDLLADINISNTFNVVDVFEYFPSDEFSLQPQNLRMSFLQVEGIDA 861



 Score = 43.9 bits (102), Expect(3) = 9e-13
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = -1

Query: 402 ADHTVEKVSQVHQEVHEKLGKSNARYKEDADKHRRLKTFEVGD 274
           A+   E++ Q+H EV + L K N  YK  AD+H+RLK F  GD
Sbjct: 736 AEEFAERIQQIHLEVKKNLEKVNLHYKIVADQHQRLKLFNEGD 778



 Score = 21.2 bits (43), Expect(3) = 9e-13
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 271 MVYLRKERFP 242
           MVYLRK  FP
Sbjct: 781 MVYLRKNHFP 790


>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score = 48.5 bits (114), Expect(3) = 7e-08
 Identities = 25/51 (49%), Positives = 30/51 (58%)
 Frame = -2

Query: 179 NDNAYMIDFPSKFNISNTFNVVDIFALYGDDDFALPHINMRSCRSEEDGTD 27
           NDNAY++  P   NISNTFNV DI   Y  D    P  N+R+  SE + TD
Sbjct: 227 NDNAYVVALPKSMNISNTFNVADIHE-YHADGVLYPEENLRTSSSEVEETD 276



 Score = 30.4 bits (67), Expect(3) = 7e-08
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 402 ADHTVEKVSQVHQEVHEKLGKSNARYKEDADKHRRLKTFEVGD 274
           A+   E++  V + V  KL  +  + K  ADK RR K F+ GD
Sbjct: 151 AETMAEEILVVKEVVKAKLEATGKKNKVAADKRRRFKVFKEGD 193



 Score = 21.6 bits (44), Expect(3) = 7e-08
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 271 MVYLRKERFPXXXXXXXXXXXXXTFKVIKKI 179
           MV LRK RF               FKV++KI
Sbjct: 196 MVLLRKGRFAVGTYNKVKPRKYGPFKVLRKI 226


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 39.7 bits (91), Expect(3) = 1e-07
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -2

Query: 179  NDNAYMIDFPSKFNISNTFNVVDIFALYGDDD 84
            N+NAY ID P+ F +S TFNV D+    G++D
Sbjct: 1515 NENAYKIDLPADFGVSPTFNVADLKPYLGEED 1546



 Score = 35.8 bits (81), Expect(3) = 1e-07
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 402  ADHTVEKVSQVHQEVHEKLGKSNARYKEDADKHRRLKTFEVGD-AWYT*EKKGF 244
            A    E + ++H+   E + + NA+YK   DK RR  TFE GD  W    K+ F
Sbjct: 1439 AKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERF 1492



 Score = 24.3 bits (51), Expect(3) = 1e-07
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 268  VYLRKERFPXXXXXXXXXXXXXTFKVIKKI 179
            ++LRKERFP              FKV+ KI
Sbjct: 1485 LHLRKERFPDLRKSKLMPRADGPFKVLAKI 1514


>dbj|BAF01788.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 127

 Score = 48.5 bits (114), Expect(3) = 2e-07
 Identities = 25/51 (49%), Positives = 30/51 (58%)
 Frame = -2

Query: 179 NDNAYMIDFPSKFNISNTFNVVDIFALYGDDDFALPHINMRSCRSEEDGTD 27
           NDNAY++  P   NISNTFNV DI   Y  D    P  N+R+  SE + TD
Sbjct: 74  NDNAYVVALPKSMNISNTFNVADIHE-YHADGVLYPEENLRTSSSEVEETD 123



 Score = 29.3 bits (64), Expect(3) = 2e-07
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 387 EKVSQVHQEVHEKLGKSNARYKEDADKHRRLKTFEVGD 274
           E++  V + V  KL  +  + K  ADK RR K F+ GD
Sbjct: 3   EEILVVKEVVKAKLEATGKKNKVAADKRRRFKVFKEGD 40



 Score = 21.6 bits (44), Expect(3) = 2e-07
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 271 MVYLRKERFPXXXXXXXXXXXXXTFKVIKKI 179
           MV LRK RF               FKV++KI
Sbjct: 43  MVLLRKGRFAVGTYNKVKPRKYGPFKVLRKI 73


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 37.7 bits (86), Expect(3) = 8e-07
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 179  NDNAYMIDFPSKFNISNTFNVVDIFALYGDD 87
            NDNAY +D P+ F +S TFN+ D+    G++
Sbjct: 1518 NDNAYRLDLPADFGVSPTFNIADLKPYLGEE 1548



 Score = 33.9 bits (76), Expect(3) = 8e-07
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 402  ADHTVEKVSQVHQEVHEKLGKSNARYKEDADKHRRLKTFEVGD-AWYT*EKKGF 244
            A    E + ++H+   E + + NARYK  +DK R+   FE GD  W    K+ F
Sbjct: 1442 ATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERF 1495



 Score = 25.0 bits (53), Expect(3) = 8e-07
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 268  VYLRKERFPXXXXXXXXXXXXXTFKVIKKI 179
            ++LRKERFP              FKV++KI
Sbjct: 1488 LHLRKERFPELRKSKLLPRADGPFKVLEKI 1517