BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039492
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96650.1| retrotransposon protein, putative, unclassified [...    91   1e-16
gb|EEC70040.1| hypothetical protein OsI_00627 [Oryza sativa Indi...    89   4e-16
gb|EEE53976.1| hypothetical protein OsJ_00596 [Oryza sativa Japo...    89   5e-16
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    87   1e-15
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    87   1e-15

>gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1100

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/121 (37%), Positives = 61/121 (50%)
 Frame = +1

Query: 28  GQSGGLWLGWNSSVNLKVLFSTDRYIATRIKNDALGISWMCTFMYGHPDQSEREEFWRSF 207
           G  GGL L W+ S +L +L  T+R+I   +K D   + W CTF+YG P   ER   W   
Sbjct: 174 GSGGGLALFWDESFHLDLLSYTNRHIDVLVKEDRSAMQWRCTFVYGEPKAHERHNMWTLL 233

Query: 208 TRIAANVSSPWIIIGDLNEITCQEEKVGGLPFDPIQATPFLDFMYAADFIDLGFEGVPFT 387
            RI  N ++PW ++GD NE   Q E          Q   F + +   D  DLGF G P+T
Sbjct: 234 RRIKPNSTAPWCLMGDFNEAMWQFEHFSEHKRKEKQMLDFREILSHCDVFDLGFIGTPWT 293

Query: 388 W 390
           +
Sbjct: 294 Y 294


>gb|EEC70040.1| hypothetical protein OsI_00627 [Oryza sativa Indica Group]
          Length = 1499

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 44/121 (36%), Positives = 62/121 (51%)
 Frame = +1

Query: 28  GQSGGLWLGWNSSVNLKVLFSTDRYIATRIKNDALGISWMCTFMYGHPDQSEREEFWRSF 207
           G   GL L W+ +V + +L    RYI   IK+++  + W CTF+YG P  SER   W   
Sbjct: 531 GGGDGLALFWDDTVQVDLLSYNFRYIDVLIKDESCPVQWRCTFVYGEPKASERHNMWTLL 590

Query: 208 TRIAANVSSPWIIIGDLNEITCQEEKVGGLPFDPIQATPFLDFMYAADFIDLGFEGVPFT 387
            RI +N ++PW ++GD NE   Q E          Q   F + +   D  DLGF G P+T
Sbjct: 591 RRIKSNSAAPWCLVGDFNEAMWQFEHFSDHKRREKQIMDFREVLSHCDVFDLGFTGAPWT 650

Query: 388 W 390
           +
Sbjct: 651 F 651


>gb|EEE53976.1| hypothetical protein OsJ_00596 [Oryza sativa Japonica Group]
          Length = 1066

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
 Frame = +1

Query: 28  GQSG-GLWLGWNSSVNLKVLFSTDRYIATRIKNDALGISWMCTFMYGHPDQSEREEFWRS 204
           G+ G GL L W+ +V + +L    RYI   IK+++  + W CTF+YG P  SER   W  
Sbjct: 452 GEGGDGLALFWDDTVQVDLLSYNFRYIDVLIKDESCPVQWRCTFVYGEPKASERHNMWTL 511

Query: 205 FTRIAANVSSPWIIIGDLNEITCQEEKVGGLPFDPIQATPFLDFMYAADFIDLGFEGVPF 384
             RI +N ++PW ++GD NE   Q E          Q   F + +   D  DLGF G P+
Sbjct: 512 LRRIKSNSTAPWCLVGDFNEAMWQFEHFSDHKRREKQIMDFREVLSHCDVFDLGFTGAPW 571

Query: 385 TW 390
           T+
Sbjct: 572 TF 573


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
           42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 48/130 (36%), Positives = 66/130 (50%)
 Frame = +1

Query: 1   PNSHSVAARGQSGGLWLGWNSSVNLKVLFSTDRYIATRIKNDALGISWMCTFMYGHPDQS 180
           PN  +   +G SGGL L W  SV L  L+  DR+I   I  +   I++  + +YGHP QS
Sbjct: 435 PNVITQPPQGHSGGLALLWKDSVRLSNLYQDDRHIDVHISIN--NINFYLSRVYGHPCQS 492

Query: 181 EREEFWRSFTRIAANVSSPWIIIGDLNEITCQEEKVGGLPFDPIQATPFLDFMYAADFID 360
           ER   W  F  ++   + PWI+IGD NEI    EK+GG   D      F + +   D  D
Sbjct: 493 ERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKD 552

Query: 361 LGFEGVPFTW 390
           +   G  F+W
Sbjct: 553 IRSIGDRFSW 562


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
           putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 48/130 (36%), Positives = 66/130 (50%)
 Frame = +1

Query: 1   PNSHSVAARGQSGGLWLGWNSSVNLKVLFSTDRYIATRIKNDALGISWMCTFMYGHPDQS 180
           PN  +   +G SGGL L W  SV L  L+  DR+I   I  +   I++  + +YGHP QS
Sbjct: 415 PNVITQPPQGHSGGLALLWKDSVRLSNLYQDDRHIDVHISIN--NINFYLSRVYGHPCQS 472

Query: 181 EREEFWRSFTRIAANVSSPWIIIGDLNEITCQEEKVGGLPFDPIQATPFLDFMYAADFID 360
           ER   W  F  ++   + PWI+IGD NEI    EK+GG   D      F + +   D  D
Sbjct: 473 ERHSLWTHFENLSKTRNDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKD 532

Query: 361 LGFEGVPFTW 390
           +   G  F+W
Sbjct: 533 IRSIGDRFSW 542