BLASTX nr result
ID: Cimicifuga21_contig00039382
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00039382
(246 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 137 1e-30
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat... 137 1e-30
ref|XP_002517668.1| pentatricopeptide repeat-containing protein,... 132 3e-29
ref|XP_003604365.1| Pentatricopeptide repeat-containing protein ... 131 5e-29
ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat... 130 1e-28
>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 137 bits (344), Expect = 1e-30
Identities = 62/80 (77%), Positives = 73/80 (91%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
MVS+LTACA LGALE+GEWIR YI++NKIK D+FV NALIDMY KCGDV+ A+ IFR+M+
Sbjct: 375 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 434
Query: 64 RRDKFTWTAMILGLAVNGHG 5
+RDKFTWTAMI+GLAVNGHG
Sbjct: 435 QRDKFTWTAMIVGLAVNGHG 454
Score = 68.2 bits (165), Expect = 7e-10
Identities = 28/73 (38%), Positives = 50/73 (68%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
+V +L+AC++L L G+ + Y++ K++ ++ + NA+IDMY+ CG+++SA IFR M
Sbjct: 243 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 302
Query: 64 RRDKFTWTAMILG 26
RD +WT ++ G
Sbjct: 303 NRDIISWTTIVSG 315
>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 137 bits (344), Expect = 1e-30
Identities = 62/80 (77%), Positives = 73/80 (91%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
MVS+LTACA LGALE+GEWIR YI++NKIK D+FV NALIDMY KCGDV+ A+ IFR+M+
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 413
Query: 64 RRDKFTWTAMILGLAVNGHG 5
+RDKFTWTAMI+GLAVNGHG
Sbjct: 414 QRDKFTWTAMIVGLAVNGHG 433
Score = 68.2 bits (165), Expect = 7e-10
Identities = 28/73 (38%), Positives = 50/73 (68%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
+V +L+AC++L L G+ + Y++ K++ ++ + NA+IDMY+ CG+++SA IFR M
Sbjct: 222 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 281
Query: 64 RRDKFTWTAMILG 26
RD +WT ++ G
Sbjct: 282 NRDIISWTTIVSG 294
>ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543300|gb|EEF44832.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 512
Score = 132 bits (332), Expect = 3e-29
Identities = 60/80 (75%), Positives = 70/80 (87%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
MVSILTACAQLGALE+GEW+R YI+KNK+K D +VGNALIDMY KCG+VE A+ IF M
Sbjct: 324 MVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMP 383
Query: 64 RRDKFTWTAMILGLAVNGHG 5
R DKFTWTAMI+GLA+NG+G
Sbjct: 384 RPDKFTWTAMIVGLAINGYG 403
Score = 70.9 bits (172), Expect = 1e-10
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
+VS+L+AC++L LE G+ + YI + ++ ++ V NALIDMY+ CG++ A IF M
Sbjct: 192 LVSVLSACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMK 251
Query: 64 RRDKFTWTAMILGLA 20
RD +WTA++ G A
Sbjct: 252 SRDVISWTAIVTGFA 266
>ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 874
Score = 131 bits (330), Expect = 5e-29
Identities = 60/80 (75%), Positives = 70/80 (87%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
MVSILTACA LGALE+GEW + YI+KNKIK D F+GNALIDMY KCG+VE A+KIF +M
Sbjct: 375 MVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ 434
Query: 64 RRDKFTWTAMILGLAVNGHG 5
++DKFTWTAMI+GLA NGHG
Sbjct: 435 KKDKFTWTAMIVGLANNGHG 454
Score = 59.3 bits (142), Expect = 3e-07
Identities = 27/76 (35%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWI-RVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKM 68
+V +L+AC++L L G+ I YI++ ++ ++ + NALIDM++ CG++++A+ +F +M
Sbjct: 242 LVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEM 301
Query: 67 TRRDKFTWTAMILGLA 20
RD +WT+++ G A
Sbjct: 302 KTRDVISWTSIVTGFA 317
>ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 130 bits (327), Expect = 1e-28
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
MVSILTACA LGALE+GEW++ YI+KN IK D FVGNALIDMY KCG+V A+K+F++M
Sbjct: 343 MVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH 402
Query: 64 RRDKFTWTAMILGLAVNGHG 5
+DKFTWTAMI+GLA+NGHG
Sbjct: 403 HKDKFTWTAMIVGLAINGHG 422
Score = 65.5 bits (158), Expect = 4e-09
Identities = 28/75 (37%), Positives = 50/75 (66%)
Frame = -3
Query: 244 MVSILTACAQLGALEVGEWIRVYIEKNKIKKDIFVGNALIDMYSKCGDVESAQKIFRKMT 65
+V +L+AC++L LE G+ I YI +++++ + N LIDM++ CG+++ AQ +F M
Sbjct: 211 LVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMK 270
Query: 64 RRDKFTWTAMILGLA 20
RD +WT+++ G A
Sbjct: 271 NRDVISWTSIVTGFA 285