BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039366
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...   226   1e-57
ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containi...   214   8e-54
ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [S...   212   2e-53
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...   208   4e-52
gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]        205   4e-51

>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score =  226 bits (576), Expect = 1e-57
 Identities = 105/157 (66%), Positives = 132/157 (84%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           LVSWNSMI  YA HG+A+QAL  F +M S G KPDDITLVGVLSACSHGGLV +G+EYF+
Sbjct: 388 LVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQEYFQ 447

Query: 292 NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
           NM+  +GIEPK +HYACMIDLLGRVGLL++A+ELI +MPMEP  A+WGAL++ACRMHG++
Sbjct: 448 NMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVHACRMHGNV 507

Query: 112 DLGKFASVKLLALDPDDSGTYALLASMYAAKRKWDDV 2
           ++ K A+ +LL LDP+DSG Y LLA++ A+ R+W DV
Sbjct: 508 EVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDV 544



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVG-LKPDDITLVGVLSACSHGGLVIQGREYF 296
           +VSW SMI GY+ H + ++ALK F  M   G ++P+++T++ VLS+CS  G +I G+ + 
Sbjct: 216 VVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFL 275

Query: 295 ENMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEM--PMEPDEASWGALLNACRMH 122
           E ++    +         ++D+  + G LD A E+   M     P E +   +L  C   
Sbjct: 276 EYVK-TRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQL 334

Query: 121 GHLDLGKF 98
           G LD+G++
Sbjct: 335 GCLDVGQW 342


>ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  214 bits (544), Expect = 8e-54
 Identities = 94/157 (59%), Positives = 130/157 (82%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           +VSWNSMI+ +AVHG +E+ L+ F Q++   + PD+IT +G+LSACSH GLV +GR YF+
Sbjct: 442 VVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFK 501

Query: 292 NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
            M+ ++GIEPK++HYACMIDLLG++GLL+EAFE+ K MPME DEA WGALLNACRM+G++
Sbjct: 502 EMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNV 561

Query: 112 DLGKFASVKLLALDPDDSGTYALLASMYAAKRKWDDV 2
           ++G+FA+ KL+ L+P DSG Y L++ +YA+K KWD V
Sbjct: 562 EIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQV 598



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
 Frame = -3

Query: 469 VSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFEN 290
           VSW+ MI  Y+     E+A++ F+ M   G++P +  LV VLSAC+  G +  GR  ++N
Sbjct: 341 VSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDN 400

Query: 289 MRGVFGIEPKAKHYA----CMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMH 122
               + I  KA          ID+  + G  D A +L  EM  E +  SW +++ A  +H
Sbjct: 401 ----YVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEM-AERNVVSWNSMIMAHAVH 455

Query: 121 GHLD--LGKFASVKLLALDPDDSGTYALLAS 35
           G  +  L  F  +K   + PD+     LL++
Sbjct: 456 GQSEEVLRLFEQLKGTCIVPDEITFLGLLSA 486



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFF-RQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYF 296
           +VSW +++ GYA  G A++A + F R + + GL+P+++TLV V+SA    GL+  GR  +
Sbjct: 207 VVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVY 266

Query: 295 ENMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGH 116
             +    G+         +ID+ G+ G    A E+   M ++ D  SW  ++NA    G 
Sbjct: 267 RYVAD-GGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVK-DVYSWTTMVNAYAKCGD 324

Query: 115 LD 110
           L+
Sbjct: 325 LE 326


>ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
           gi|241943785|gb|EES16930.1| hypothetical protein
           SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  212 bits (540), Expect = 2e-53
 Identities = 94/157 (59%), Positives = 130/157 (82%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           +VSWN+MIV +A+HG +E+AL  F++ +++G+ PD+IT +GVLSACSH GLV +GR +F+
Sbjct: 432 VVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFK 491

Query: 292 NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
            M+ V+GIEP+A+HYACMIDLLG+VGLL+EAFE+ + MP+  DEA WGALLNACRMHG++
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 112 DLGKFASVKLLALDPDDSGTYALLASMYAAKRKWDDV 2
           ++GK A+ KL+ LDP DSG Y L++ +YA+K KW  V
Sbjct: 552 EIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQV 588



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
 Frame = -3

Query: 469 VSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFEN 290
           VSW+ M+  Y+     E+A++ F  M + G++P D TLV VLSAC+  G +  GR  ++ 
Sbjct: 331 VSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDA 390

Query: 289 MRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHLD 110
                 +E         ID+  + G +  A  L + M  + +  SW  ++ A  +HG  +
Sbjct: 391 YIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNME-DKNVVSWNTMIVAHALHGQSE 449

Query: 109 --LGKFASVKLLALDPDD 62
             L  F   K + + PD+
Sbjct: 450 EALHLFQKFKAIGIFPDE 467


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
            gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
            protein [Medicago truncatula]
          Length = 1024

 Score =  208 bits (529), Expect = 4e-52
 Identities = 93/157 (59%), Positives = 126/157 (80%)
 Frame = -3

Query: 472  LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
            L+SWN+MI GYA +G A+QA+  F QM+++G +P++IT V +L+ACSHGGL+ +GREYF+
Sbjct: 557  LISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFD 616

Query: 292  NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
            NM   +GI+P+  HYACM+DLLGR GLL+EA++LI  MPM+P EA+WGALLNACRMHG++
Sbjct: 617  NMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNV 676

Query: 112  DLGKFASVKLLALDPDDSGTYALLASMYAAKRKWDDV 2
            +L + ++  LL LDP+DSG Y LLA+  A  RKW DV
Sbjct: 677  ELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDV 713



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           +V+W +MI GYA H  +E+A++ F  M    ++P+++TL+ V+SACS  G +  G+   E
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHE 382

Query: 292 -----NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACR 128
                NMR    +      +  ++D+  +   L +A EL   M  + D  SW +++N   
Sbjct: 383 KVEEKNMRCSLSL------HNALLDMYVKCDCLVDARELFDRMATK-DVYSWTSMVNGYA 435

Query: 127 MHGHLD 110
             G L+
Sbjct: 436 KCGDLE 441


>gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  205 bits (521), Expect = 4e-51
 Identities = 92/157 (58%), Positives = 124/157 (78%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           +VSWN+MI+ + +HG  E+AL  F++ +  G+ PD+ T +GVLSACSHGGLV +GR +F+
Sbjct: 432 VVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFK 491

Query: 292 NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
            M+ V+GIEP+A+HYACMIDLLG+VGLL EAFE+ + MP+  DEA WGALLNACRMHG++
Sbjct: 492 EMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNV 551

Query: 112 DLGKFASVKLLALDPDDSGTYALLASMYAAKRKWDDV 2
           ++GK A+ KL  LDP DSG Y L++ +YA+K KW  V
Sbjct: 552 EIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQV 588



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
 Frame = -3

Query: 472 LVSWNSMIVGYAVHGYAEQALKFFRQMQSVGLKPDDITLVGVLSACSHGGLVIQGREYFE 293
           +VSW+ M+  Y+     ++A++ F  M + G++P D TLV VLSAC+    +  G   ++
Sbjct: 330 VVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYD 389

Query: 292 NMRGVFGIEPKAKHYACMIDLLGRVGLLDEAFELIKEMPMEPDEASWGALLNACRMHGHL 113
                  +E         ID+  + G +  A  L   M  + +  SW  ++ A  +HG  
Sbjct: 390 TYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTMIMAHGLHGQP 448

Query: 112 D--LGKFASVKLLALDPDDSGTYALLAS 35
           +  L  F   K   + PD++    +L++
Sbjct: 449 EEALHLFQEFKGNGILPDEATYIGVLSA 476