BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039328
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    50   1e-12
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      50   8e-11
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    53   1e-10
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    53   1e-10
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...    66   1e-10

>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 49.7 bits (117), Expect(2) = 1e-12
 Identities = 20/48 (41%), Positives = 32/48 (66%)
 Frame = -3

Query: 351 VLLEGPSKAGLYPITPSSIISKATLIGDRVLMEGWNQRLGHPSTKLLT 208
           +LL+GP + G+YP+  S   +    + +R  + GW+QRLGHPS K++T
Sbjct: 397 ILLQGPCENGVYPMPSSPAATPIAFVHERTSVTGWHQRLGHPSFKVVT 444



 Score = 48.1 bits (113), Expect(2) = 1e-12
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -2

Query: 151 CPNCLSGKAHRLPFYDSTSVTQAPLELVHVDLWGLAPVSSRTGYHYYFL 5
           C +C   KAH+LPF+     +  P +L++ D+WG +P  S  G+ YY +
Sbjct: 464 CHSCSINKAHQLPFHKHGLTSTTPFDLLYTDVWGPSPTPSLNGHRYYVI 512


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 50.4 bits (119), Expect(2) = 8e-11
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = -2

Query: 154 LCPNCLSGKAHRLPFYDSTSVTQAPLELVHVDLWGLAPVSSRTGYHYY 11
           +C  C  GK+H+LPF  STS +  PLELV  D+WG AP  S  G  YY
Sbjct: 481 VCDACQKGKSHQLPFLKSTSASNFPLELVFSDVWGPAP-DSVGGRKYY 527



 Score = 40.8 bits (94), Expect(2) = 8e-11
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = -3

Query: 357 KRVLLEGPSKAGLYPITPSSIISKATLIGDRVLMEGWNQRLGHPSTKLL 211
           K  LL GP   GLYP+  S+  SK  L   +  +  W+ RLGHPS +++
Sbjct: 413 KNTLLRGPCCNGLYPLPASTSSSKQVLGAIKPTVSIWHSRLGHPSWQIV 461


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score = 52.8 bits (125), Expect(2) = 1e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)
 Frame = -2

Query: 229 SKHQTSHFLQKNKALKYSGNRTFNKLCPNCLSGKAHRLPFYDSTSVTQAPLELVHVDLWG 50
           SK      L +NK L    N     +C  C   K H+LPF  STSV+  PLEL+H D+WG
Sbjct: 453 SKPIVLRILSQNK-LPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWG 511

Query: 49  LAPVSSRTGYHYYFL 5
             P S   G   Y++
Sbjct: 512 --PASESVGAKKYYV 524



 Score = 38.1 bits (87), Expect(2) = 1e-10
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -3

Query: 357 KRVLLEGPSKAGLYPITPSSIISKATLIGDRVLMEGWNQRLGHPSTKLL 211
           +R +LEGP + GLYP+   S + +A +     +   W+ RLGHPS  ++
Sbjct: 411 RRTILEGPCRRGLYPLPARSSLRQAFVATPSFVR--WHGRLGHPSKPIV 457


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score = 52.8 bits (125), Expect(2) = 1e-10
 Identities = 30/75 (40%), Positives = 38/75 (50%)
 Frame = -2

Query: 229 SKHQTSHFLQKNKALKYSGNRTFNKLCPNCLSGKAHRLPFYDSTSVTQAPLELVHVDLWG 50
           SK      L +NK L    N     +C  C   K H+LPF  STSV+  PLEL+H D+WG
Sbjct: 462 SKPIVLRILSQNK-LPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWG 520

Query: 49  LAPVSSRTGYHYYFL 5
             P S   G   Y++
Sbjct: 521 --PASESVGAKKYYV 533



 Score = 38.1 bits (87), Expect(2) = 1e-10
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -3

Query: 357 KRVLLEGPSKAGLYPITPSSIISKATLIGDRVLMEGWNQRLGHPSTKLL 211
           +R +LEGP + GLYP+   S + +A +     +   W+ RLGHPS  ++
Sbjct: 420 RRTILEGPCRRGLYPLPARSSLRQAFVATPSFVR--WHGRLGHPSKPIV 466


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score = 66.2 bits (160), Expect(2) = 1e-10
 Identities = 33/77 (42%), Positives = 44/77 (57%)
 Frame = -2

Query: 235 GSSKHQTSHFLQKNKALKYSGNRTFNKLCPNCLSGKAHRLPFYDSTSVTQAPLELVHVDL 56
           G    Q    L   KA++   N++ +K+C +C  GK+ RLPF  S  +   PLE VH DL
Sbjct: 454 GHPNPQVLQLLANKKAIQI--NKSTSKMCESCRLGKSSRLPFIASDFIASRPLERVHCDL 511

Query: 55  WGLAPVSSRTGYHYYFL 5
           WG APVSS  G+ YY +
Sbjct: 512 WGPAPVSSIQGFQYYVI 528



 Score = 24.6 bits (52), Expect(2) = 1e-10
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 354 RVLLEGPSKA-GLYPITPSSIISKATLIGDRVLMEGWNQRLGHPSTKLL 211
           +VL +G S + GLY +         +    +   E W+ RLGHP+ ++L
Sbjct: 413 KVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVL 461