BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00039077
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containi...   124   8e-27
ref|XP_002527345.1| pentatricopeptide repeat-containing protein,...   102   2e-20
ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
ref|XP_003615371.1| Pentatricopeptide repeat-containing protein ...    91   7e-17
ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containi...    84   9e-15

>ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  124 bits (311), Expect = 8e-27
 Identities = 70/130 (53%), Positives = 86/130 (66%)
 Frame = +2

Query: 2   SVAVNGTPKLDLELRKSSQHSLSTEKSTSISYQRSNTVTPSIKHTDPRSLDFSEALSILK 181
           SVAV  TPK + E RK S   L +EKS S+SYQRS  +      ++ R LDF EALS ++
Sbjct: 6   SVAVTRTPKSESEFRKYSASFLPSEKSPSVSYQRSTQLDGV---SEARCLDFREALSFIR 62

Query: 182 EGSTKIESAVYVPLLQECIDNYSASEAQXXXXXXXXXXXXQDLFLMTFLVNVYSKCGAMD 361
           EG TK+ESA YVP+LQECID    S+AQ            +D FLMTFLVNVY+KCG M+
Sbjct: 63  EG-TKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTME 121

Query: 362 YAREVFDKLP 391
            AR+VFD+LP
Sbjct: 122 TARKVFDELP 131


>ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533264|gb|EEF35017.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score =  102 bits (255), Expect = 2e-20
 Identities = 65/131 (49%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
 Frame = +2

Query: 2   SVAVNGTPKLDLELRKS-SQHSLSTEKSTSISYQRSNTVTPSIKHTDP-RSLDFSEALSI 175
           SV+++ T KL+ ELRK  S  SL TEKS S SYQRS+  T      +P + L+F EAL  
Sbjct: 6   SVSLSSTLKLEPELRKHPSSSSLPTEKSPSTSYQRSSINTQLDGSLEPIKPLEFHEALCF 65

Query: 176 LKEGSTKIESAVYVPLLQECIDNYSASEAQXXXXXXXXXXXXQDLFLMTFLVNVYSKCGA 355
           +KE   KIE + Y+PLLQEC    S SEAQ            +DL +MT LVNVY+KCGA
Sbjct: 66  IKE-EKKIEPSYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGA 124

Query: 356 MDYAREVFDKL 388
           M  AR++FD L
Sbjct: 125 MGNARKIFDSL 135


>ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 55/130 (42%), Positives = 71/130 (54%)
 Frame = +2

Query: 2   SVAVNGTPKLDLELRKSSQHSLSTEKSTSISYQRSNTVTPSIKHTDPRSLDFSEALSILK 181
           S AV  T KL  +  K S  S   EK  SIS+Q+S+  T          LDF EAL + K
Sbjct: 6   SSAVTATLKLHPQFPKYSPSSYPPEKGQSISFQKSHRFT---------HLDFGEALLLNK 56

Query: 182 EGSTKIESAVYVPLLQECIDNYSASEAQXXXXXXXXXXXXQDLFLMTFLVNVYSKCGAMD 361
           EG+ + E   YVPLLQ+C+D  S S  Q             + F+M+FLVNVY+KCG M+
Sbjct: 57  EGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNME 116

Query: 362 YAREVFDKLP 391
            AR VF+ +P
Sbjct: 117 DARRVFENMP 126


>ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355516706|gb|AES98329.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 765

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = +2

Query: 5   VAVNGTPKLDLELRKSSQHSLSTEKSTSISYQRSNTVTPSIKHTDP-RSLDFSEALSILK 181
           V V  T KL  + RK    S   +K  SIS Q+++  T    H DP R+L F EA S+ K
Sbjct: 10  VGVTATLKLHPQFRKYPPTSFPIDKGQSISLQKTHIST----HLDPNRNLKFQEAFSLAK 65

Query: 182 EGSTKIESAVYVPLLQECIDNYSASEAQXXXXXXXXXXXXQDLFLMTFLVNVYSKCGAMD 361
           E + +++S+ Y PLLQ+C++N S S  Q            +D FL +FLV VY+KCG M+
Sbjct: 66  ESNEEVDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRME 125

Query: 362 YAREVFDKL 388
            A++VFD +
Sbjct: 126 CAQQVFDHM 134


>ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 47/109 (43%), Positives = 61/109 (55%)
 Frame = +2

Query: 62  SLSTEKSTSISYQRSNTVTPSIKHTDPRSLDFSEALSILKEGSTKIESAVYVPLLQECID 241
           S   EK  SIS+Q+S+  T          LDF E L + KEG+ + E   YVPLLQ+C+D
Sbjct: 29  SYPPEKGQSISFQKSHRFT---------HLDFGETLLLTKEGTEEEEKLFYVPLLQQCLD 79

Query: 242 NYSASEAQXXXXXXXXXXXXQDLFLMTFLVNVYSKCGAMDYAREVFDKL 388
             S SE Q             + F+M+FLVNVY+KCG M+ AR VFD +
Sbjct: 80  TRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNM 128