BLASTX nr result
ID: Cimicifuga21_contig00038854
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00038854
(230 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containi... 112 2e-23
emb|CBI16710.3| unnamed protein product [Vitis vinifera] 112 2e-23
ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 100 9e-20
ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containi... 100 9e-20
ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [... 99 5e-19
>ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 112 bits (281), Expect = 2e-23
Identities = 52/76 (68%), Positives = 66/76 (86%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YNTL++G+VK +EI QAN L+EEMR+KG+ PD +TFNILVSGH K+GR EDGDRLL+DIS
Sbjct: 374 YNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDIS 433
Query: 49 ISGLLPDLSVPDISIA 2
+ GLLPD S+ DIS++
Sbjct: 434 VLGLLPDRSLFDISVS 449
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN+LI GF K ++ +A L + MR +GL PD T N+++ G CK GR+ + D+
Sbjct: 619 YNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMH 678
Query: 49 ISGLLPDL 26
+GL PD+
Sbjct: 679 QTGLSPDI 686
>emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 112 bits (281), Expect = 2e-23
Identities = 52/76 (68%), Positives = 66/76 (86%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YNTL++G+VK +EI QAN L+EEMR+KG+ PD +TFNILVSGH K+GR EDGDRLL+DIS
Sbjct: 164 YNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDIS 223
Query: 49 ISGLLPDLSVPDISIA 2
+ GLLPD S+ DIS++
Sbjct: 224 VLGLLPDRSLFDISVS 239
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN+LI GF K ++ +A L + MR +GL PD T N+++ G CK GR+ + D+
Sbjct: 409 YNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMH 468
Query: 49 ISGLLPDL 26
+GL PD+
Sbjct: 469 QTGLSPDI 476
>ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 100 bits (250), Expect = 9e-20
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN +I G+VKA++I QAN LFEEMR K + PD +TFN LV+GH ++G+ EDG+RLLRD+S
Sbjct: 365 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLS 424
Query: 49 ISGLLPDLSVPDISIA 2
+SGLL D S+ D+++A
Sbjct: 425 VSGLLHDSSLCDVTVA 440
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN+LI GF K ++ +A L EM ++GL PD T N+++ G CK GR++ D+
Sbjct: 610 YNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMC 669
Query: 49 ISGLLPDL 26
GL PD+
Sbjct: 670 RMGLSPDI 677
Score = 56.6 bits (135), Expect = 2e-06
Identities = 24/67 (35%), Positives = 41/67 (61%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YNTLIDG+ KA ++G A+ L +M + G PD T+NI + G+C ++ +L ++
Sbjct: 680 YNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELI 739
Query: 49 ISGLLPD 29
G++P+
Sbjct: 740 SVGIVPN 746
>ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 100 bits (250), Expect = 9e-20
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN +I G+VKA++I QAN LFEEMR K + PD +TFN LV+GH ++G+ EDG+RLLRD+S
Sbjct: 396 YNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLS 455
Query: 49 ISGLLPDLSVPDISIA 2
+SGLL D S+ D+++A
Sbjct: 456 VSGLLHDSSLCDVTVA 471
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN+LI GF K ++ +A L EM ++GL PD T N+++ G CK GR++ D+
Sbjct: 641 YNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMC 700
Query: 49 ISGLLPDL 26
GL PD+
Sbjct: 701 RMGLSPDI 708
Score = 56.6 bits (135), Expect = 2e-06
Identities = 24/67 (35%), Positives = 41/67 (61%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YNTLIDG+ KA ++G A+ L +M + G PD T+NI + G+C ++ +L ++
Sbjct: 711 YNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELI 770
Query: 49 ISGLLPD 29
G++P+
Sbjct: 771 SVGIVPN 777
>ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 98.6 bits (244), Expect = 5e-19
Identities = 44/76 (57%), Positives = 61/76 (80%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YNTL+DG+ KA+E+ QA+ L+EEMR G++PD VTFNILV GH K+GR+ED DRLL+D+
Sbjct: 355 YNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLI 414
Query: 49 ISGLLPDLSVPDISIA 2
+SGL D S+ D+ ++
Sbjct: 415 VSGLFLDSSLYDVMVS 430
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
YN+LI G + +A L +EMR+KGL D TFNI++ G C+ G+++ D+
Sbjct: 600 YNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQ 659
Query: 49 ISGLLPDLSVPDISI 5
GLLPD+ +I I
Sbjct: 660 RIGLLPDIFTFNILI 674
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = -2
Query: 229 YNTLIDGFVKAKEIGQANSLFEEMREKGLTPDAVTFNILVSGHCKFGRVEDGDRLLRDIS 50
Y L+DG+ K + A L++EM+E+G+ PDAV F L+ G K G VE+ + ++S
Sbjct: 530 YTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMS 589
Query: 49 ISGLLPD 29
G +P+
Sbjct: 590 AIGFVPN 596