BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038688
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528778.1| pentatricopeptide repeat-containing protein,...   211   5e-53
emb|CBI33923.3| unnamed protein product [Vitis vinifera]              209   2e-52
ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containi...   209   2e-52
ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containi...   206   2e-51
ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|2...   200   1e-49

>ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531781|gb|EEF33600.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score =  211 bits (537), Expect = 5e-53
 Identities = 101/160 (63%), Positives = 129/160 (80%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R +F++   LDLVSWNS+I GYVKNG++G+A +LFDEMP RD  SWNSMI+GYVG  D+E
Sbjct: 211 RLLFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMPERDAFSWNSMISGYVGAGDVE 270

Query: 301 TAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKD 122
            A++LF  M  +DVV+WN MIDGYA+I NVSVAR LF+QM  RN+VSWN MLALY++ K+
Sbjct: 271 AAKKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKN 330

Query: 121 NAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKIDRG 2
             ECL+LFDRMIE  E++PN+A+L+SVL ACAN  ++D G
Sbjct: 331 YGECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLG 370



 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 40/193 (20%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           +K+FD     D+VSWN +IDGY K   V VA  LF++MP R+IVSWN M+A Y+  ++  
Sbjct: 273 KKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYG 332

Query: 301 TAQELFKRM-----------------------KVKDVVTW-----------------NSM 242
              +LF RM                       +  D+  W                  ++
Sbjct: 333 ECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTAL 392

Query: 241 IDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKPN 62
           +  YA+ G +  AR +F +M  ++VVSWN+M+  Y  +    + L  F  M E+  + PN
Sbjct: 393 LTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAINGHAEKALETFLEM-EKSSMMPN 451

Query: 61  EATLVSVLIACAN 23
            AT VSVL AC++
Sbjct: 452 AATFVSVLSACSH 464


>emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/160 (63%), Positives = 127/160 (79%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R +F+  S  DLV+WNS+IDGYVKNGE+G A +LF+EMP RD+ SWNSMIAGYVG  DM 
Sbjct: 65  RAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMT 124

Query: 301 TAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKD 122
            A++LF +M  +D+V+WN MIDGYA++ N+ +A +LF+ M  RNVVSWN MLALYVR KD
Sbjct: 125 AAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKD 184

Query: 121 NAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKIDRG 2
             ECLR+FD+M+   E  PNEATLVSVL ACA+LG++DRG
Sbjct: 185 YDECLRMFDKMM--GETMPNEATLVSVLTACAHLGRLDRG 222



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 39/189 (20%)
 Frame = -3

Query: 451 DLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDMETAQELFKRMK 272
           D+VSWN +IDGY +   + +A +LF+ MP R++VSWN M+A YV ++D +    +F +M 
Sbjct: 137 DIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM 196

Query: 271 VK---------------------------------------DVVTWNSMIDGYARIGNVS 209
            +                                       DV+   +++  YA+ G + 
Sbjct: 197 GETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMD 256

Query: 208 VARKLFDQMKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKPNEATLVSVLIAC 29
           +AR +FD+M  R+VVSWN+M+  Y       + L +F  M E+    PN+AT + VL AC
Sbjct: 257 LARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM-EKRGPMPNDATFICVLSAC 315

Query: 28  ANLGKIDRG 2
           A+ G I  G
Sbjct: 316 AHSGMILEG 324


>ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/160 (63%), Positives = 127/160 (79%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R +F+  S  DLV+WNS+IDGYVKNGE+G A +LF+EMP RD+ SWNSMIAGYVG  DM 
Sbjct: 214 RAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMT 273

Query: 301 TAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKD 122
            A++LF +M  +D+V+WN MIDGYA++ N+ +A +LF+ M  RNVVSWN MLALYVR KD
Sbjct: 274 AAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKD 333

Query: 121 NAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKIDRG 2
             ECLR+FD+M+   E  PNEATLVSVL ACA+LG++DRG
Sbjct: 334 YDECLRMFDKMM--GETMPNEATLVSVLTACAHLGRLDRG 371



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 39/189 (20%)
 Frame = -3

Query: 451 DLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDMETAQELFKRMK 272
           D+VSWN +IDGY +   + +A +LF+ MP R++VSWN M+A YV ++D +    +F +M 
Sbjct: 286 DIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMM 345

Query: 271 VK---------------------------------------DVVTWNSMIDGYARIGNVS 209
            +                                       DV+   +++  YA+ G + 
Sbjct: 346 GETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMD 405

Query: 208 VARKLFDQMKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKPNEATLVSVLIAC 29
           +AR +FD+M  R+VVSWN+M+  Y       + L +F  M E+    PN+AT + VL AC
Sbjct: 406 LARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDM-EKRGPMPNDATFICVLSAC 464

Query: 28  ANLGKIDRG 2
           A+ G I  G
Sbjct: 465 AHSGMILEG 473


>ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  206 bits (524), Expect = 2e-51
 Identities = 102/162 (62%), Positives = 126/162 (77%), Gaps = 2/162 (1%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R VFD S  LDLVS+NS+IDGYVKNGE+G A K+F+EMP RD++SWN +IAGYVGV D++
Sbjct: 162 RMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLD 221

Query: 301 TAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQMKK--RNVVSWNTMLALYVRS 128
            A ELF+ +  +D V+WN MIDG AR+GNVS+A K FD+M    RNVVSWN++LAL+ R 
Sbjct: 222 AANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARV 281

Query: 127 KDNAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKIDRG 2
           K+  ECL LF +M+E  E  PNEATLVSVL ACANLGK+  G
Sbjct: 282 KNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMG 323



 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 42/201 (20%)
 Frame = -3

Query: 478 KVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPG--RDIVSWNSMIAGYVGVEDM 305
           ++F+   + D VSWN +IDG  + G V +A K FD MP   R++VSWNS++A +  V++ 
Sbjct: 225 ELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNY 284

Query: 304 ETAQELFKRM---------------------------------------KVK-DVVTWNS 245
                LF +M                                        +K DV+    
Sbjct: 285 GECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTC 344

Query: 244 MIDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKP 65
           ++  YA+ G + +A+ +FD+M  R+VVSWN+M+  Y       + L LF  M E+   +P
Sbjct: 345 LLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEM-EKAGQQP 403

Query: 64  NEATLVSVLIACANLGKIDRG 2
           N+AT +SVL AC + G +  G
Sbjct: 404 NDATFISVLSACTHAGMVMEG 424



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 41/118 (34%), Positives = 66/118 (55%)
 Frame = -3

Query: 364 GRDIVSWNSMIAGYVGVEDMETAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQ 185
           G D+ + NS+I  Y     +  A+ +F      D+V++NSMIDGY + G +  ARK+F++
Sbjct: 139 GSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNE 198

Query: 184 MKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKI 11
           M  R+V+SWN ++A YV   D      LF+ + ER+ V  N      ++  CA +G +
Sbjct: 199 MPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWN-----CMIDGCARVGNV 251


>ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|222870244|gb|EEF07375.1|
           predicted protein [Populus trichocarpa]
          Length = 617

 Score =  200 bits (508), Expect = 1e-49
 Identities = 101/160 (63%), Positives = 125/160 (78%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R VFD    LDLVSWNS+IDGYVKNGE+G+A ++FDEM  RDI +WNSMI+GYVGV DME
Sbjct: 213 RMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDME 272

Query: 301 TAQELFKRMKVKDVVTWNSMIDGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKD 122
            A+ LF +M  +DVV+WN MIDG+ARI +VS+A K FD+M  RNVVSWN MLALY+R K 
Sbjct: 273 AARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKK 332

Query: 121 NAECLRLFDRMIEREEVKPNEATLVSVLIACANLGKIDRG 2
            ++CLR FD M+  + V P+EA+LVSVL ACA L  +D+G
Sbjct: 333 YSDCLRFFDMMVGGDFV-PDEASLVSVLTACAELKMLDQG 371



 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 39/199 (19%)
 Frame = -3

Query: 481 RKVFDASSDLDLVSWNSIIDGYVKNGEVGVAWKLFDEMPGRDIVSWNSMIAGYVGVEDME 302
           R +FD     D+VSWN +IDG+ +  +V +A K FDEMP R++VSWN M+A Y+  +   
Sbjct: 275 RGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYS 334

Query: 301 TAQELFKRM----------------------KVKDVVTW-----------------NSMI 239
                F  M                      K+ D   W                  +++
Sbjct: 335 DCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALL 394

Query: 238 DGYARIGNVSVARKLFDQMKKRNVVSWNTMLALYVRSKDNAECLRLFDRMIEREEVKPNE 59
             YA+ G + +AR++FD+M +++VVSWN+M+  Y       + L +F R +E+    PN+
Sbjct: 395 TMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMF-REMEKGGPMPND 453

Query: 58  ATLVSVLIACANLGKIDRG 2
           AT +SVL AC++ G +  G
Sbjct: 454 ATFMSVLSACSHSGMVWNG 472