BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038446
         (356 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   105   4e-21
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   101   7e-20
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...    91   7e-17
ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-li...    91   7e-17
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]               84   9e-15

>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
           gi|297733815|emb|CBI15062.3| unnamed protein product
           [Vitis vinifera]
          Length = 1127

 Score =  105 bits (262), Expect = 4e-21
 Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
 Frame = -1

Query: 302 MAVGQRATVRISNIPLTAIAKELIDFFEAILGKDTVFACEIFTEHKHWKSKGVGRVQFES 123
           MAVG+R TV++SNIP TAIAKEL  F E+ LG +T++A EI TEHK+WKS+G GRVQFE+
Sbjct: 1   MAVGERPTVKVSNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFET 60

Query: 122 LSEVYTVNQLFAERKLVFQNTHLEISSS-EDIIVRPNAARN 3
           L      + L  +  LVF+ + L IS++ +DIIVRP   RN
Sbjct: 61  LQAKRAADLLSLQGDLVFRGSSLSISATFDDIIVRPVEPRN 101


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  101 bits (251), Expect = 7e-20
 Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 1/90 (1%)
 Frame = -1

Query: 284 ATVRISNIPLTAIAKELIDFFEAILGKDTVFACEIFTEHKHWKSKGVGRVQFESLSEVYT 105
           ATVR+SNIP TAIAK+L DFFE+ +GK +VFAC+IF+EHK+WKS+G GRVQFE+      
Sbjct: 9   ATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQ 68

Query: 104 VNQLFAERKLVFQNTHLEISSS-EDIIVRP 18
              L  + KLVF+   L ++SS +DII RP
Sbjct: 69  SLSLSEQGKLVFKGHQLILTSSFDDIIARP 98


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
 Frame = -1

Query: 302 MAVGQRATVRISNIPLTAIAKELIDFFEAILGKDTVFACEIFTEHKHWKSKGVGRVQFES 123
           MA  +R+T+R+SN+P +AIA++L++F  + LG D+VFA EIFTE K+WKS+G GRVQF +
Sbjct: 1   MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 122 LSEVYTVNQLFAERKLVFQNTHLEIS-SSEDIIVRPNAARN 3
           L        L  +  LVF   +L  S  ++DI+VRP  A N
Sbjct: 61  LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATN 101


>ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
           gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
           2 [Cucumis sativus]
          Length = 1117

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
 Frame = -1

Query: 302 MAVGQRATVRISNIPLTAIAKELIDFFEAILGKDTVFACEIFTEHKHWKSKGVGRVQFES 123
           MA  +R+T+R+SN+P +AIA++L++F  + LG D+VFA EIFTE K+WKS+G GRVQF +
Sbjct: 1   MAQPERSTLRVSNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTT 60

Query: 122 LSEVYTVNQLFAERKLVFQNTHLEIS-SSEDIIVRPNAARN 3
           L        L  +  LVF   +L  S  ++DI+VRP  A N
Sbjct: 61  LEAKAKAMSLSVQNSLVFGTQNLRFSLINDDIVVRPVHATN 101


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 43/92 (46%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
 Frame = -1

Query: 290 QRATVRISNIPLTAIAKELIDFFEAILGKDTVFACEIFTEHKHWKSKGVGRVQFESLSEV 111
           +R T+R++NIP TA+AK+L+DFFE+ LG D+VFA EI T+  +WKS+G GRVQF +   +
Sbjct: 7   ERPTLRLTNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAM 66

Query: 110 YTVNQLFAERKLVFQNTHLEISSS-EDIIVRP 18
               +L     L+F++  L++S + +DII RP
Sbjct: 67  SDALRLSRHDHLLFKSHSLKLSRTYDDIIPRP 98