BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038252
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]    66   3e-09
ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containi...    65   8e-09
ref|XP_002514728.1| pentatricopeptide repeat-containing protein,...    63   2e-08
ref|NP_200948.1| pentatricopeptide repeat-containing protein [Ar...    56   3e-06
ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    56   3e-06

>emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +3

Query: 3   QFFKASQFFKHMRGCGLIPDVYT--VIIQGQCQLKRTLNATMWLADMLKMGIMPNEVTFR 176
           + FKAS+FF  MR  GL PDV+T  VIIQG  +     +  M  AD+LKMGI+PN   +R
Sbjct: 571 RIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYR 630

Query: 177 VLANSCKENGDIHSVVS 227
           VLA   +E+G + S +S
Sbjct: 631 VLAKGYEESGYLKSALS 647


>ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   QFFKASQFFKHMRGCGLIPDVYT--VIIQGQCQLKRTLNATMWLADMLKMGIMPNEVTFR 176
           + FKAS+FF  MR  GL PDV+T  VIIQG  +     +  M  AD+LKMGI+PN   +R
Sbjct: 571 RIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYR 630

Query: 177 VLANSCKENGDIHSVV 224
           VLA   +E+G + S +
Sbjct: 631 VLAKGYEESGYLKSAL 646


>ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546332|gb|EEF47834.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   QFFKASQFFKHMRGCGLIPDV--YTVIIQGQCQLKRTLNATMWLADMLKMGIMPNEVTFR 176
           + FKA++FF  MR  GL PD   Y V++QG    K   +  M  ADM+KMGI+PNEVT +
Sbjct: 417 EIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQ 476

Query: 177 VLANSCKENGDIHSVV 224
           V+    ++NG + S +
Sbjct: 477 VVRRGYQDNGYLKSAL 492


>ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g61400 gi|9757861|dbj|BAB08495.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332010079|gb|AED97462.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 12  KASQFFKHMRGCGLIPDV--YTVIIQGQCQLKRTLNATMWLADMLKMGIMPNEVTFRVLA 185
           +AS+FF  MR CG+ PD+  Y  +++G  Q KR  +  M   DM+K GI+PN +  ++LA
Sbjct: 567 RASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLA 626

Query: 186 NSCKENGDIHS 218
              + NG + S
Sbjct: 627 RFYQANGYVKS 637


>ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +3

Query: 9   FKASQFFKHMRGCGLIPD--VYTVIIQGQCQLKRTLNATMWLADMLKMGIMPNEVTFRVL 182
           FKA++FF  M+  G  PD  VY  ++Q   Q K  ++  M  ADM+KMG++ N   +RVL
Sbjct: 407 FKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMGVIQNTFIYRVL 466

Query: 183 ANSCKENGDIHSVV 224
           +   +ENG + S +
Sbjct: 467 SRGYRENGYLKSAL 480