BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00038094
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...    68   3e-17
emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]    72   3e-17
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    75   4e-17
emb|CAN79529.1| hypothetical protein VITISV_026262 [Vitis vinifera]    73   5e-17
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    72   8e-17

>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
            gi|225898008|dbj|BAH30336.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 1459

 Score = 67.8 bits (164), Expect(2) = 3e-17
 Identities = 31/51 (60%), Positives = 40/51 (78%)
 Frame = -2

Query: 153  SFSLVIKPTTIRIVINLAVSSRWSLQQLDVKNAFLHGSLHETVFMTRPPGF 1
            +FS VIK TTIR+V+++AV   W L+QLDV NAFL G+L E V+M +PPGF
Sbjct: 1030 TFSPVIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGF 1080



 Score = 45.4 bits (106), Expect(2) = 3e-17
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = -3

Query: 236  RTKTWILVPPSPHRHTVGCKWVFNLKH 156
            R  TW LVPP+P +H VGC+WVF LK+
Sbjct: 975  RNHTWDLVPPNPTQHLVGCRWVFKLKY 1001


>emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]
          Length = 1312

 Score = 71.6 bits (174), Expect(2) = 3e-17
 Identities = 32/51 (62%), Positives = 42/51 (82%)
 Frame = -2

Query: 153  SFSLVIKPTTIRIVINLAVSSRWSLQQLDVKNAFLHGSLHETVFMTRPPGF 1
            +FS V+KP TIR+V+++AVSS W ++QLDV NAFL+G L E VFM +PPGF
Sbjct: 879  TFSPVVKPCTIRLVLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGF 929



 Score = 41.6 bits (96), Expect(2) = 3e-17
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -3

Query: 236 RTKTWILVPPSPHRHTVGCKWVFNLKH 156
           + +TW LVPP  +   +GCKWVF LKH
Sbjct: 824 KNQTWSLVPPPSNAKIIGCKWVFKLKH 850


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 75.5 bits (184), Expect(2) = 4e-17
 Identities = 34/51 (66%), Positives = 45/51 (88%)
 Frame = -2

Query: 153  SFSLVIKPTTIRIVINLAVSSRWSLQQLDVKNAFLHGSLHETVFMTRPPGF 1
            +FS V+K +TIR+V++LAVS +WSL+QLDV+NAFLHG L ETV+M +PPGF
Sbjct: 1005 TFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVYMKQPPGF 1055



 Score = 37.4 bits (85), Expect(2) = 4e-17
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 236  RTKTWILVPPSPHRHTVGCKWVFNLKH 156
            +  TW LVPP   R+ + CKWVF +K+
Sbjct: 950  KNNTWTLVPPDRTRNLIDCKWVFKVKY 976


>emb|CAN79529.1| hypothetical protein VITISV_026262 [Vitis vinifera]
          Length = 752

 Score = 72.8 bits (177), Expect(2) = 5e-17
 Identities = 30/51 (58%), Positives = 44/51 (86%)
 Frame = -2

Query: 153 SFSLVIKPTTIRIVINLAVSSRWSLQQLDVKNAFLHGSLHETVFMTRPPGF 1
           +F+LV+KPTTIR+V+++A+S+ W + QLDV NAFLHG+L E V+M +PPG+
Sbjct: 677 TFNLVVKPTTIRVVLSIALSNGWPISQLDVNNAFLHGNLIEDVYMAQPPGY 727



 Score = 39.7 bits (91), Expect(2) = 5e-17
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 236 RTKTWILVPPSPHRHTVGCKWVFNLK 159
           R +TW+LVPP  + + V CKWVF +K
Sbjct: 622 RNRTWVLVPPPSNHNIVWCKWVFRIK 647


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1621

 Score = 72.0 bits (175), Expect(2) = 8e-17
 Identities = 33/51 (64%), Positives = 42/51 (82%)
 Frame = -2

Query: 153 SFSLVIKPTTIRIVINLAVSSRWSLQQLDVKNAFLHGSLHETVFMTRPPGF 1
           +FS V+K  TIRI+++LAVS  WSL+QLDV+NAFLHG L E V+M +PPGF
Sbjct: 747 TFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGF 797



 Score = 39.7 bits (91), Expect(2) = 8e-17
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -3

Query: 236 RTKTWILVPPSPHRHTVGCKWVFNLK 159
           + KTW LVPP   R+ +GCKWV+ +K
Sbjct: 692 KNKTWHLVPPQRGRNIIGCKWVYKIK 717