BLASTX nr result

ID: Cimicifuga21_contig00037420 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00037420
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37
emb|CBI40590.3| unnamed protein product [Vitis vinifera]              159   2e-37
ref|XP_002523296.1| pentatricopeptide repeat-containing protein,...   132   3e-29
ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  159 bits (402), Expect = 2e-37
 Identities = 73/93 (78%), Positives = 81/93 (87%)
 Frame = -2

Query: 281 MNPLKQIHAHTLRNGTDQFKFLIIKLLQIPNIPYAHKLFDIIPQPTAFLYNKLIQAYSSH 102
           MN LKQI A+TLRNG +  K LI+ LLQIP+IPYAHKLFD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 101 GPYHQCLQLYSQMCLQRCSPNEHSFTFLFAACA 3
           GP+HQC  LY+QMCLQ CSPNEHSFTFLF+ACA
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACA 93


>emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  159 bits (402), Expect = 2e-37
 Identities = 73/93 (78%), Positives = 81/93 (87%)
 Frame = -2

Query: 281 MNPLKQIHAHTLRNGTDQFKFLIIKLLQIPNIPYAHKLFDIIPQPTAFLYNKLIQAYSSH 102
           MN LKQI A+TLRNG +  K LI+ LLQIP+IPYAHKLFD IP+PT FLYNKLIQAYSSH
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSH 60

Query: 101 GPYHQCLQLYSQMCLQRCSPNEHSFTFLFAACA 3
           GP+HQC  LY+QMCLQ CSPNEHSFTFLF+ACA
Sbjct: 61  GPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACA 93


>ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537384|gb|EEF39012.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 353

 Score =  132 bits (332), Expect = 3e-29
 Identities = 61/93 (65%), Positives = 71/93 (76%)
 Frame = -2

Query: 281 MNPLKQIHAHTLRNGTDQFKFLIIKLLQIPNIPYAHKLFDIIPQPTAFLYNKLIQAYSSH 102
           MN LKQIHA+TLRNG D  K L  +L+QIPN+PYAHKL D+IP P  FLYNKLIQAYS  
Sbjct: 1   MNQLKQIHAYTLRNGIDYNKTLTERLIQIPNVPYAHKLIDLIPSPNVFLYNKLIQAYSFQ 60

Query: 101 GPYHQCLQLYSQMCLQRCSPNEHSFTFLFAACA 3
              HQC  +YSQM  + C+ N+H+FTFLFAACA
Sbjct: 61  NQLHQCFSIYSQMRSRNCTGNQHTFTFLFAACA 93


>ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  129 bits (324), Expect = 2e-28
 Identities = 61/93 (65%), Positives = 73/93 (78%)
 Frame = -2

Query: 281 MNPLKQIHAHTLRNGTDQFKFLIIKLLQIPNIPYAHKLFDIIPQPTAFLYNKLIQAYSSH 102
           MN LKQIHA++LRNG D  KFLI KLLQ+P++PYA  LFD IP+P+ +LYNK IQ +SS 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 101 GPYHQCLQLYSQMCLQRCSPNEHSFTFLFAACA 3
           G  H+C  LY QMC Q CSPN++SFTFLF ACA
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACA 93


>ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  129 bits (324), Expect = 2e-28
 Identities = 61/93 (65%), Positives = 73/93 (78%)
 Frame = -2

Query: 281 MNPLKQIHAHTLRNGTDQFKFLIIKLLQIPNIPYAHKLFDIIPQPTAFLYNKLIQAYSSH 102
           MN LKQIHA++LRNG D  KFLI KLLQ+P++PYA  LFD IP+P+ +LYNK IQ +SS 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSI 60

Query: 101 GPYHQCLQLYSQMCLQRCSPNEHSFTFLFAACA 3
           G  H+C  LY QMC Q CSPN++SFTFLF ACA
Sbjct: 61  GHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACA 93


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