BLASTX nr result

ID: Cimicifuga21_contig00037115 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00037115
         (440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305338.1| predicted protein [Populus trichocarpa] gi|2...   208   3e-52
ref|XP_002269568.1| PREDICTED: uncharacterized mitochondrial pro...   205   3e-51
ref|XP_002519696.1| RNA binding protein, putative [Ricinus commu...   196   2e-48
ref|XP_003547207.1| PREDICTED: uncharacterized mitochondrial pro...   188   4e-46
ref|XP_004165625.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   186   2e-45

>ref|XP_002305338.1| predicted protein [Populus trichocarpa] gi|222848302|gb|EEE85849.1|
           predicted protein [Populus trichocarpa]
          Length = 623

 Score =  208 bits (530), Expect = 3e-52
 Identities = 101/142 (71%), Positives = 119/142 (83%)
 Frame = -1

Query: 440 LQTAVLKGQFIWGMKTDLFLRSPNDKPLMKLISKRKLRAILESDKPSFQDRVVQELLLLI 261
           LQTAV+  +F W  K    LRSPNDKP  KL+SKRKL A++ESD P FQDRVVQE+LL++
Sbjct: 75  LQTAVVHNRFKWNDKAHQILRSPNDKPSTKLVSKRKLSAMMESDDPCFQDRVVQEMLLMV 134

Query: 260 LEPVCEARFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEIFDNVRIDMLMGCL 81
           LEP+ EARFS KSHAFRPGRNAHTVIRTIRSNFAGYLWFL+GDLSEI D++  D++MGC+
Sbjct: 135 LEPIFEARFSRKSHAFRPGRNAHTVIRTIRSNFAGYLWFLRGDLSEILDDIDADVVMGCV 194

Query: 80  ENSVKDKKVLGLIKSALRTPVR 15
           E  V+DKKVL LIK AL++PVR
Sbjct: 195 EKVVRDKKVLNLIKKALKSPVR 216


>ref|XP_002269568.1| PREDICTED: uncharacterized mitochondrial protein ymf11-like [Vitis
           vinifera]
          Length = 689

 Score =  205 bits (521), Expect = 3e-51
 Identities = 102/144 (70%), Positives = 120/144 (83%)
 Frame = -1

Query: 440 LQTAVLKGQFIWGMKTDLFLRSPNDKPLMKLISKRKLRAILESDKPSFQDRVVQELLLLI 261
           LQ AV++G+F W  K   ++RSPN+KPL +  SKRK+++ILES+ P FQDRVVQE+LLLI
Sbjct: 113 LQNAVVRGRFSWNHKIHSYIRSPNEKPLTEFTSKRKIQSILESNAPCFQDRVVQEVLLLI 172

Query: 260 LEPVCEARFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEIFDNVRIDMLMGCL 81
           LEP+ EARFS KSHAFRPGRNAHTVIRTIRSNFAGYLWFL+GD+SEIF+ V  D++MG L
Sbjct: 173 LEPIFEARFSSKSHAFRPGRNAHTVIRTIRSNFAGYLWFLRGDVSEIFETVDTDVVMGYL 232

Query: 80  ENSVKDKKVLGLIKSALRTPVRNQ 9
           E  VKDKKVLGLIK AL   VRNQ
Sbjct: 233 EKYVKDKKVLGLIKLALGARVRNQ 256


>ref|XP_002519696.1| RNA binding protein, putative [Ricinus communis]
           gi|223541113|gb|EEF42669.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 681

 Score =  196 bits (498), Expect = 2e-48
 Identities = 96/144 (66%), Positives = 116/144 (80%)
 Frame = -1

Query: 440 LQTAVLKGQFIWGMKTDLFLRSPNDKPLMKLISKRKLRAILESDKPSFQDRVVQELLLLI 261
           LQ AV+  +F W  KT   +RSPNDKP  KL+SK KL+A++ S+ P FQDRVVQE+LL++
Sbjct: 105 LQNAVVHNRFKWNDKTRQIIRSPNDKPFTKLVSKTKLKAMVNSNDPCFQDRVVQEVLLMV 164

Query: 260 LEPVCEARFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEIFDNVRIDMLMGCL 81
           LEP  EARFS KSHAFRPGRNAHTVIRTIRSNFAGYLWFL+GDLSEIF  V  + ++ C+
Sbjct: 165 LEPFFEARFSGKSHAFRPGRNAHTVIRTIRSNFAGYLWFLRGDLSEIFYAVDANFVLECV 224

Query: 80  ENSVKDKKVLGLIKSALRTPVRNQ 9
           E  VKDKKVL L+K AL++P+RNQ
Sbjct: 225 EKVVKDKKVLNLVKDALKSPMRNQ 248


>ref|XP_003547207.1| PREDICTED: uncharacterized mitochondrial protein ymf11-like
           [Glycine max]
          Length = 686

 Score =  188 bits (477), Expect = 4e-46
 Identities = 93/137 (67%), Positives = 111/137 (81%)
 Frame = -1

Query: 440 LQTAVLKGQFIWGMKTDLFLRSPNDKPLMKLISKRKLRAILESDKPSFQDRVVQELLLLI 261
           L+ AV++ +F W  KT+  LR+PND  + K +SKRK RA ++S KP FQDRVVQE+LL+I
Sbjct: 110 LRNAVIRNRFEWNDKTNPLLRAPNDAAVSKPLSKRKFRAAIQSGKPCFQDRVVQEILLMI 169

Query: 260 LEPVCEARFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEIFDNVRIDMLMGCL 81
           LEPV E RFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDL+EI D V  +++M  L
Sbjct: 170 LEPVFEPRFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLTEILDRVDPNVVMRSL 229

Query: 80  ENSVKDKKVLGLIKSAL 30
           E   +DKK+LGLIKSAL
Sbjct: 230 EKGTRDKKILGLIKSAL 246


>ref|XP_004165625.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized mitochondrial
           protein ymf11-like [Cucumis sativus]
          Length = 697

 Score =  186 bits (471), Expect = 2e-45
 Identities = 91/140 (65%), Positives = 112/140 (80%)
 Frame = -1

Query: 440 LQTAVLKGQFIWGMKTDLFLRSPNDKPLMKLISKRKLRAILESDKPSFQDRVVQELLLLI 261
           L+ AV+ G+F W  K +  +R PNDK    LISKRKLRA+LESD+P FQDRVVQE+LL +
Sbjct: 129 LRNAVINGKFSWNRKANQLIRCPNDKSRTHLISKRKLRAMLESDEPCFQDRVVQEVLLNV 188

Query: 260 LEPVCEARFSPKSHAFRPGRNAHTVIRTIRSNFAGYLWFLKGDLSEIFDNVRIDMLMGCL 81
           LEP  EARFS KSHAFRPGRNAH+ IR IRSNFAGYLWFLK DLSE+  ++  +++MG L
Sbjct: 189 LEPXFEARFSLKSHAFRPGRNAHSFIRAIRSNFAGYLWFLKADLSEVLSHIDENVVMGSL 248

Query: 80  ENSVKDKKVLGLIKSALRTP 21
           E +VKDKK+L L+KSAL++P
Sbjct: 249 EKAVKDKKILRLVKSALQSP 268


Top