BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036984
         (604 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    97   9e-23
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...    80   1e-20
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...    80   2e-20
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...    80   2e-20
gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japo...    80   2e-20

>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 97.4 bits (241), Expect(2) = 9e-23
 Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 5/125 (4%)
 Frame = +2

Query: 41  KKSLQCWNKLVLGNIRAKISKLSKEISDIQLLPFFEINQI-----KENDLQKCLEVSLKN 205
           K+ L+ WNK V GNI+ +  KL +EI  +Q   F E NQ      KE+ L K  EV L+ 
Sbjct: 247 KEKLKKWNKEVFGNIQQRKDKLVQEIQAVQ--DFLEHNQTDDLLNKEDVLIKEFEVVLEQ 304

Query: 206 EKVFWKQKSRDKWITKGDKNTKFFHATTICRRKINTIRWLKNHNDIWTHSKPEINQILLA 385
           E++ W QKSR+KWI  GD+NTK+FH +TI RR+ N I  LK+    W     E+ ++ + 
Sbjct: 305 EEIVWFQKSREKWIALGDRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMAVE 364

Query: 386 HFQNL 400
           ++Q L
Sbjct: 365 YYQKL 369



 Score = 35.0 bits (79), Expect(2) = 9e-23
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)
 Frame = +3

Query: 453 IQKIISKLDNENLSALPSAEESE--KSFFSI---------GSLKAPGPDGFPSLFFKNSW 599
           +  I+ +L +   + L   E S+  K F SI         G  KAPGPDG+  +F+++ W
Sbjct: 375 VDSIVERLPSAGFTCLTREEISDLSKPFMSIDVENSMRGMGRFKAPGPDGYQPVFYQDCW 434


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1621

 Score = 79.7 bits (195), Expect(2) = 1e-20
 Identities = 36/121 (29%), Positives = 64/121 (52%)
 Frame = +2

Query: 50  LQCWNKLVLGNIRAKISKLSKEISDIQLLPFFEINQIKENDLQKCLEVSLKNEKVFWKQK 229
           L  W+  VLG++  ++ K+ KE+   +  P      ++E  L+  LE   +   ++WKQ+
Sbjct: 536 LSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQR 595

Query: 230 SRDKWITKGDKNTKFFHATTICRRKINTIRWLKNHNDIWTHSKPEINQILLAHFQNLLTD 409
           +   W+ KGD+NT FFHA+   RR+ N I  L+  +  W   + +   +++  F+ L T 
Sbjct: 596 AHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTS 655

Query: 410 N 412
           N
Sbjct: 656 N 656



 Score = 45.4 bits (106), Expect(2) = 1e-20
 Identities = 21/50 (42%), Positives = 33/50 (66%)
 Frame = +3

Query: 450 LIQKIISKLDNENLSALPSAEESEKSFFSIGSLKAPGPDGFPSLFFKNSW 599
           ++ + +S   NE+L A  + EE +++  +IG LKAPGPDG P+ F+K  W
Sbjct: 667 VVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDGMPAGFYKACW 716


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score = 80.5 bits (197), Expect(2) = 2e-20
 Identities = 41/125 (32%), Positives = 73/125 (58%)
 Frame = +2

Query: 32  KIQKKSLQCWNKLVLGNIRAKISKLSKEISDIQLLPFFEINQIKENDLQKCLEVSLKNEK 211
           K+    L  W+K  +GN+R KI  L +++ +++ +   + +  + + ++K LE  L  E+
Sbjct: 235 KVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDN-EVHSVKKELEEMLHREE 293

Query: 212 VFWKQKSRDKWITKGDKNTKFFHATTICRRKINTIRWLKNHNDIWTHSKPEINQILLAHF 391
           ++WKQ+SR  W+ +GD NT++FH     R K N I+ LK ++   T +K E+ +I  + F
Sbjct: 294 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEISRSFF 353

Query: 392 QNLLT 406
           Q L T
Sbjct: 354 QQLYT 358



 Score = 44.3 bits (103), Expect(2) = 2e-20
 Identities = 25/62 (40%), Positives = 36/62 (58%)
 Frame = +3

Query: 414 DNLDCPQEIPETLIQKIISKLDNENLSALPSAEESEKSFFSIGSLKAPGPDGFPSLFFKN 593
           DNL+ P  +     +KI  ++ N +L    + EE   + F IG LKAPGPDGFP+ F + 
Sbjct: 361 DNLN-PVNLLNMFHEKISEQM-NADLIKPFTDEEISDALFQIGPLKAPGPDGFPARFLQR 418

Query: 594 SW 599
           +W
Sbjct: 419 NW 420


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score = 80.1 bits (196), Expect(2) = 2e-20
 Identities = 41/125 (32%), Positives = 73/125 (58%)
 Frame = +2

Query: 32  KIQKKSLQCWNKLVLGNIRAKISKLSKEISDIQLLPFFEINQIKENDLQKCLEVSLKNEK 211
           K+    L  W+K  +GN+R KI  L +++ +++ +   + +  + + ++K LE  L  E+
Sbjct: 260 KVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDN-EVHSVKKELEEMLHREE 318

Query: 212 VFWKQKSRDKWITKGDKNTKFFHATTICRRKINTIRWLKNHNDIWTHSKPEINQILLAHF 391
           ++WKQ+SR  W+ +GD NT++FH     R K N I+ LK ++   T +K E+ +I  + F
Sbjct: 319 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFF 378

Query: 392 QNLLT 406
           Q L T
Sbjct: 379 QQLYT 383



 Score = 44.3 bits (103), Expect(2) = 2e-20
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +3

Query: 414 DNLDCPQEIPETLIQKIISKLDNENLSALPSAEESEKSFFSIGSLKAPGPDGFPSLFFKN 593
           DNL+ P  +     +KI  +++ + +    + E S+ + F IG LKAPGPDGFP+ F + 
Sbjct: 386 DNLN-PVNLLNMFHEKISEQMNADLIKPFTNEEISD-ALFQIGPLKAPGPDGFPARFLQR 443

Query: 594 SW 599
           +W
Sbjct: 444 NW 445


>gb|EEE59920.1| hypothetical protein OsJ_12548 [Oryza sativa Japonica Group]
          Length = 1076

 Score = 80.1 bits (196), Expect(2) = 2e-20
 Identities = 41/125 (32%), Positives = 73/125 (58%)
 Frame = +2

Query: 32  KIQKKSLQCWNKLVLGNIRAKISKLSKEISDIQLLPFFEINQIKENDLQKCLEVSLKNEK 211
           K+    L  W+K  +GN+R KI  L +++ +++ +   + +  + + ++K LE  L  E+
Sbjct: 41  KVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDN-EVHSVKKELEEMLHREE 99

Query: 212 VFWKQKSRDKWITKGDKNTKFFHATTICRRKINTIRWLKNHNDIWTHSKPEINQILLAHF 391
           ++WKQ+SR  W+ +GD NT++FH     R K N I+ LK ++   T +K E+ +I  + F
Sbjct: 100 IWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFF 159

Query: 392 QNLLT 406
           Q L T
Sbjct: 160 QQLYT 164



 Score = 44.3 bits (103), Expect(2) = 2e-20
 Identities = 23/62 (37%), Positives = 37/62 (59%)
 Frame = +3

Query: 414 DNLDCPQEIPETLIQKIISKLDNENLSALPSAEESEKSFFSIGSLKAPGPDGFPSLFFKN 593
           DNL+ P  +     +KI  +++ + +    + E S+ + F IG LKAPGPDGFP+ F + 
Sbjct: 167 DNLN-PVNLLNMFHEKISEQMNADLIKPFTNEEISD-ALFQIGPLKAPGPDGFPARFLQR 224

Query: 594 SW 599
           +W
Sbjct: 225 NW 226