BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036911
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   110   9e-23
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...   107   1e-21
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...   105   3e-21
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...   104   9e-21
emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II larg...   102   3e-20

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  110 bits (276), Expect = 9e-23
 Identities = 60/90 (66%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1    GVTENIMLGQLAPIGPGDCRLYLNDQMLQQYTESHLPSYMQGCD-GAT-SRPPFTGTPCQ 174
            GVTENIMLGQLAPIG GDC LYLNDQMLQ   E  LPSYM+G D G T SR P TGTP  
Sbjct: 1443 GVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTPYH 1502

Query: 175  DGMISQFFLLIPNVHASLNKGVQFSPYVDG 264
            DGM+S  +LL PN+  S     QFSPYV G
Sbjct: 1503 DGMMSPNYLLSPNLRLSPITDAQFSPYVGG 1532


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score =  107 bits (267), Expect = 1e-21
 Identities = 57/90 (63%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1    GVTENIMLGQLAPIGPGDCRLYLNDQMLQQYTESHLPSYMQGCD-GAT-SRPPFTGTPCQ 174
            GVTENIMLGQLAPIG G C LYLNDQMLQQ  E  LPSY++G D G T +R P +GTP  
Sbjct: 1114 GVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPYH 1173

Query: 175  DGMISQFFLLIPNVHASLNKGVQFSPYVDG 264
            +GM+S  +LL PN+ AS     QFSPYV G
Sbjct: 1174 EGMMSPSYLLSPNIRASPITDAQFSPYVGG 1203


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  105 bits (263), Expect = 3e-21
 Identities = 57/89 (64%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1    GVTENIMLGQLAPIGPGDCRLYLNDQMLQQYTESHLPSYMQGCD-GAT-SRPPFTGTPCQ 174
            GVTENIMLGQLAPIG G C LYLNDQMLQQ  E  LPSY++G D G T +R P TGTP  
Sbjct: 1442 GVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPITGTPYH 1501

Query: 175  DGMISQFFLLIPNVHAS-LNKGVQFSPYV 258
            +GM+S  +LL PN+ AS +N    FSPYV
Sbjct: 1502 EGMMSPSYLLSPNIRASPINTDASFSPYV 1530


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score =  104 bits (259), Expect = 9e-21
 Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
 Frame = +1

Query: 1    GVTENIMLGQLAPIGPGDCRLYLNDQMLQQYTESHLPSYMQGCD-GAT-SRPPFTGTPCQ 174
            GVTENIMLGQLAPIG G C LYLNDQMLQQ  E  LPSY++G D G T +R P +GTP  
Sbjct: 1442 GVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPYH 1501

Query: 175  DGMISQFFLLIPNVHAS-LNKGVQFSPYV 258
            +GM+S  +LL PN+ AS +N    FSPYV
Sbjct: 1502 EGMMSPSYLLSPNIRASPINTDASFSPYV 1530


>emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana] gi|7270532|emb|CAB81489.1|
            DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Arabidopsis thaliana]
          Length = 1840

 Score =  102 bits (254), Expect = 3e-20
 Identities = 54/90 (60%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1    GVTENIMLGQLAPIGPGDCRLYLNDQMLQQYTESHLPSYMQGCD-GAT-SRPPFTGTPCQ 174
            GVTENIMLGQLAPIG GDC LYLND+ML+   E  LPSYM G + G T +R P +GTP  
Sbjct: 1445 GVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGTPYH 1504

Query: 175  DGMISQFFLLIPNVHASLNKGVQFSPYVDG 264
            +GM+S  +LL PN+  S     QFSPYV G
Sbjct: 1505 EGMMSPNYLLSPNMRLSPMSDAQFSPYVGG 1534