BLASTX nr result

ID: Cimicifuga21_contig00036866 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036866
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI14973.3| unnamed protein product [Vitis vinifera]              195   3e-48
ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat...   195   3e-48
emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera]   194   6e-48
ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat...   191   5e-47
ref|XP_002322190.1| predicted protein [Populus trichocarpa] gi|2...   187   1e-45

>emb|CBI14973.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  195 bits (496), Expect = 3e-48
 Identities = 93/140 (66%), Positives = 114/140 (81%)
 Frame = +2

Query: 2   FSALLCACSHAGSVKDGKEIFRRMEDEFGITARVEHYVHMVKLLGIAGELEEAYNLVQTM 181
           FSALLC C HAG VK+G+EIF RM +EF I AR +HYVHMVKLLG+AGEL+EAY+L+ ++
Sbjct: 360 FSALLCTCCHAGLVKNGREIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSL 419

Query: 182 LVPLNSGVLGALLSCCATHGNFELGEIVAHQLSEIEPEKTAYRVMLSNIYASNGKWDKVK 361
             P++SG+ GALLSCC  HGN EL EIVA QL E +PEK+AYRVMLSNIYA + +WD VK
Sbjct: 420 QQPVDSGIWGALLSCCNFHGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVK 479

Query: 362 NLRDDMIGEGLRKMPGISWI 421
            LRDD+   G++KMPG+SWI
Sbjct: 480 KLRDDIQEAGIKKMPGLSWI 499


>ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Vitis vinifera]
          Length = 560

 Score =  195 bits (496), Expect = 3e-48
 Identities = 93/140 (66%), Positives = 114/140 (81%)
 Frame = +2

Query: 2   FSALLCACSHAGSVKDGKEIFRRMEDEFGITARVEHYVHMVKLLGIAGELEEAYNLVQTM 181
           FSALLC C HAG VK+G+EIF RM +EF I AR +HYVHMVKLLG+AGEL+EAY+L+ ++
Sbjct: 416 FSALLCTCCHAGLVKNGREIFSRMTEEFHIQARTDHYVHMVKLLGMAGELQEAYDLILSL 475

Query: 182 LVPLNSGVLGALLSCCATHGNFELGEIVAHQLSEIEPEKTAYRVMLSNIYASNGKWDKVK 361
             P++SG+ GALLSCC  HGN EL EIVA QL E +PEK+AYRVMLSNIYA + +WD VK
Sbjct: 476 QQPVDSGIWGALLSCCNFHGNPELAEIVAQQLFENKPEKSAYRVMLSNIYAGDDRWDDVK 535

Query: 362 NLRDDMIGEGLRKMPGISWI 421
            LRDD+   G++KMPG+SWI
Sbjct: 536 KLRDDIQEAGIKKMPGLSWI 555


>emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera]
          Length = 560

 Score =  194 bits (493), Expect = 6e-48
 Identities = 93/140 (66%), Positives = 111/140 (79%)
 Frame = +2

Query: 2   FSALLCACSHAGSVKDGKEIFRRMEDEFGITARVEHYVHMVKLLGIAGELEEAYNLVQTM 181
           FSALLC C HAG V DG+EIF RM +EF I AR EHYVHMVKLLG+AGEL+EAY+L+ ++
Sbjct: 416 FSALLCTCCHAGLVNDGREIFSRMTEEFHIQARTEHYVHMVKLLGMAGELQEAYDLILSL 475

Query: 182 LVPLNSGVLGALLSCCATHGNFELGEIVAHQLSEIEPEKTAYRVMLSNIYASNGKWDKVK 361
             P +SG+ GALLSCC  HGN EL  IVA QL E +PEK+AYRVMLSNIYA + +WD VK
Sbjct: 476 QQPADSGIWGALLSCCNFHGNSELAXIVAQQLFENKPEKSAYRVMLSNIYAGDXRWDDVK 535

Query: 362 NLRDDMIGEGLRKMPGISWI 421
            LRDD+   G++KMPG+SWI
Sbjct: 536 KLRDDIQEAGIKKMPGLSWI 555


>ref|XP_003528138.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g64310-like [Glycine max]
          Length = 551

 Score =  191 bits (485), Expect = 5e-47
 Identities = 95/140 (67%), Positives = 109/140 (77%)
 Frame = +2

Query: 2   FSALLCACSHAGSVKDGKEIFRRMEDEFGITARVEHYVHMVKLLGIAGELEEAYNLVQTM 181
           FS+LLCAC HAG VKDG+EIF+RM+ EF I AR EHYV+MVKLLG AGELEEAYNL Q++
Sbjct: 410 FSSLLCACCHAGLVKDGREIFQRMKHEFNIRARPEHYVYMVKLLGSAGELEEAYNLTQSL 469

Query: 182 LVPLNSGVLGALLSCCATHGNFELGEIVAHQLSEIEPEKTAYRVMLSNIYASNGKWDKVK 361
             P++  +LGALLSCC   GN EL E VAHQL E  P    YRVMLSNIYA +G+WD VK
Sbjct: 470 PEPVDKAILGALLSCCNICGNSELAETVAHQLFESSPADNVYRVMLSNIYAGDGRWDDVK 529

Query: 362 NLRDDMIGEGLRKMPGISWI 421
            LRD+M G G RKMPG+SWI
Sbjct: 530 KLRDNMTG-GPRKMPGLSWI 548


>ref|XP_002322190.1| predicted protein [Populus trichocarpa] gi|222869186|gb|EEF06317.1|
           predicted protein [Populus trichocarpa]
          Length = 459

 Score =  187 bits (474), Expect = 1e-45
 Identities = 90/140 (64%), Positives = 111/140 (79%)
 Frame = +2

Query: 2   FSALLCACSHAGSVKDGKEIFRRMEDEFGITARVEHYVHMVKLLGIAGELEEAYNLVQTM 181
           FSALLCAC HAG VKDG+EIFRRM+DEF I AR EHYVH+VKLLG+AGEL+EAYN + ++
Sbjct: 317 FSALLCACCHAGLVKDGREIFRRMKDEFWIQARTEHYVHIVKLLGMAGELDEAYNFILSL 376

Query: 182 LVPLNSGVLGALLSCCATHGNFELGEIVAHQLSEIEPEKTAYRVMLSNIYASNGKWDKVK 361
             P++SG+ GALLSCC  HG+ EL EIVA QL + EP+K AYRVMLSN+YA +G+W  V+
Sbjct: 377 KQPVDSGIWGALLSCCDAHGDSELAEIVAQQLFDGEPKKGAYRVMLSNVYAGDGRWVDVE 436

Query: 362 NLRDDMIGEGLRKMPGISWI 421
            +RD +   G  KMPG+S I
Sbjct: 437 KMRDYITTAGAEKMPGLSRI 456


Top