BLASTX nr result

ID: Cimicifuga21_contig00036849 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036849
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21005.3| unnamed protein product [Vitis vinifera]              111   5e-23
ref|XP_002282464.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
emb|CAN80315.1| hypothetical protein VITISV_020760 [Vitis vinifera]   111   5e-23
gb|AAT66765.1| Putative selenium-binding protein, related [Solan...   106   2e-21
ref|XP_004157162.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   101   7e-20

>emb|CBI21005.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  111 bits (278), Expect = 5e-23
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
 Frame = -2

Query: 312 KPDNGSDVTAKG--YLGTIEELEAFCKLNKVSEAVDVLKTLDQKGITVDLPRYVLLMQSC 139
           KPD  S   A+   Y GT+EE++ FCK  KV EA++VL  L+++   VDLPRY+ LM++C
Sbjct: 331 KPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKAC 390

Query: 138 GVVRVLQYAKDVHDHLIKSAGHINVSVHNKILEMYSKCGSMSDAY 4
           G  + LQ AK VH+ LIKS   + VS +N+ILEMYSKCGSM DAY
Sbjct: 391 GEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAY 435


>ref|XP_002282464.1| PREDICTED: pentatricopeptide repeat-containing protein At2g25580
           [Vitis vinifera]
          Length = 807

 Score =  111 bits (278), Expect = 5e-23
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
 Frame = -2

Query: 312 KPDNGSDVTAKG--YLGTIEELEAFCKLNKVSEAVDVLKTLDQKGITVDLPRYVLLMQSC 139
           KPD  S   A+   Y GT+EE++ FCK  KV EA++VL  L+++   VDLPRY+ LM++C
Sbjct: 395 KPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKAC 454

Query: 138 GVVRVLQYAKDVHDHLIKSAGHINVSVHNKILEMYSKCGSMSDAY 4
           G  + LQ AK VH+ LIKS   + VS +N+ILEMYSKCGSM DAY
Sbjct: 455 GEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAY 499


>emb|CAN80315.1| hypothetical protein VITISV_020760 [Vitis vinifera]
          Length = 1148

 Score =  111 bits (278), Expect = 5e-23
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 2/105 (1%)
 Frame = -2

Query: 312 KPDNGSDVTAKG--YLGTIEELEAFCKLNKVSEAVDVLKTLDQKGITVDLPRYVLLMQSC 139
           KPD  S   A+   Y GT+EE++ FCK  KV EA++VL  L+++   VDLPRY+ LM++C
Sbjct: 395 KPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKAC 454

Query: 138 GVVRVLQYAKDVHDHLIKSAGHINVSVHNKILEMYSKCGSMSDAY 4
           G  + LQ AK VH+ LIKS   + VS +N+ILEMYSKCGSM DAY
Sbjct: 455 GEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAY 499


>gb|AAT66765.1| Putative selenium-binding protein, related [Solanum demissum]
          Length = 741

 Score =  106 bits (264), Expect = 2e-21
 Identities = 46/89 (51%), Positives = 68/89 (76%)
 Frame = -2

Query: 270 GTIEELEAFCKLNKVSEAVDVLKTLDQKGITVDLPRYVLLMQSCGVVRVLQYAKDVHDHL 91
           G+++EL+  CK  KV EAV+VL+ LDQ+ +TVDL RY++LM  C   + L+ AK +H+HL
Sbjct: 346 GSVDELDDLCKEGKVKEAVEVLQLLDQQHVTVDLSRYIMLMDVCSEDKSLEDAKSIHEHL 405

Query: 90  IKSAGHINVSVHNKILEMYSKCGSMSDAY 4
           ++S  H+++ ++NKILEMY KCGSM DA+
Sbjct: 406 VRSHPHLDIKMYNKILEMYGKCGSMKDAF 434


>ref|XP_004157162.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g25580-like [Cucumis sativus]
          Length = 731

 Score =  101 bits (251), Expect = 7e-20
 Identities = 49/89 (55%), Positives = 66/89 (74%)
 Frame = -2

Query: 270 GTIEELEAFCKLNKVSEAVDVLKTLDQKGITVDLPRYVLLMQSCGVVRVLQYAKDVHDHL 91
           G +E+L+ FCK  K+ EAV +L+ L+++ I VDL RY+ LM +CG  R L+ AK V +++
Sbjct: 335 GPLEKLDEFCKEGKLKEAVQILEVLEKQHIPVDLSRYLDLMNACGEARSLEEAKVVCNYV 394

Query: 90  IKSAGHINVSVHNKILEMYSKCGSMSDAY 4
           IKS  H+ VS +NKILEMYSKCGSM DAY
Sbjct: 395 IKSQTHVKVSTYNKILEMYSKCGSMDDAY 423


Top