BLASTX nr result

ID: Cimicifuga21_contig00036821 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036821
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257...   129   2e-28
ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|2...   124   8e-27
ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arab...   114   6e-24
ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana] ...   114   6e-24
ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like...   113   2e-23

>ref|XP_002277216.1| PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera]
           gi|297737934|emb|CBI27135.3| unnamed protein product
           [Vitis vinifera]
          Length = 552

 Score =  129 bits (325), Expect = 2e-28
 Identities = 62/99 (62%), Positives = 76/99 (76%), Gaps = 3/99 (3%)
 Frame = -1

Query: 289 LVPSLKLQTDKDIYRPGDSVAVTITVHNPG---KETNKHETDNDAKWSLLLEKLSFEIKG 119
           LVPSLKL+TDKD+YRPG+S+ V+I +HNP     E +K E   D    LL+E LSFEIKG
Sbjct: 32  LVPSLKLRTDKDVYRPGESIVVSIEIHNPSGVVDELSKKENAGDVLCPLLVEMLSFEIKG 91

Query: 118 YEKLDTQWFATKKQLSGPRHRRGEHVFLDCSTPSIISNQ 2
            EKLD+QW+AT+K L G + RRGEH FLDC+TPSI+SNQ
Sbjct: 92  IEKLDSQWYATQKPLPGSKQRRGEHTFLDCATPSIVSNQ 130


>ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|222853559|gb|EEE91106.1|
           predicted protein [Populus trichocarpa]
          Length = 533

 Score =  124 bits (311), Expect = 8e-27
 Identities = 62/106 (58%), Positives = 77/106 (72%)
 Frame = -1

Query: 319 SEEPKKDQLRLVPSLKLQTDKDIYRPGDSVAVTITVHNPGKETNKHETDNDAKWSLLLEK 140
           S + +KD+L  VP+LK+QTDKD+YRPGDS+ VTI + NP     K     D   SLL+EK
Sbjct: 16  SSDGRKDEL--VPTLKVQTDKDVYRPGDSILVTIEISNP-----KDGASEDVMSSLLIEK 68

Query: 139 LSFEIKGYEKLDTQWFATKKQLSGPRHRRGEHVFLDCSTPSIISNQ 2
           L F I+G +KLD QWFAT+K L G + RRGEHVF+DCST SI+SNQ
Sbjct: 69  LGFAIRGIQKLDNQWFATQKPLPGSKQRRGEHVFMDCSTSSIVSNQ 114


>ref|XP_002891556.1| hypothetical protein ARALYDRAFT_891939 [Arabidopsis lyrata subsp.
           lyrata] gi|297337398|gb|EFH67815.1| hypothetical protein
           ARALYDRAFT_891939 [Arabidopsis lyrata subsp. lyrata]
          Length = 527

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/97 (59%), Positives = 73/97 (75%)
 Frame = -1

Query: 292 RLVPSLKLQTDKDIYRPGDSVAVTITVHNPGKETNKHETDNDAKWSLLLEKLSFEIKGYE 113
           ++ PSL +QTDKD+YRPGDS+ VTI V N       HE  N++  S+L+EKLSFE+KG E
Sbjct: 22  KIKPSLTVQTDKDVYRPGDSIFVTIEVGN------SHE--NESNPSILVEKLSFEVKGLE 73

Query: 112 KLDTQWFATKKQLSGPRHRRGEHVFLDCSTPSIISNQ 2
           KLD QWF+T+K   G + RRGEH+FLD STPS+ISNQ
Sbjct: 74  KLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQ 110


>ref|NP_175432.2| uncharacterized protein [Arabidopsis thaliana]
           gi|20268711|gb|AAM14059.1| unknown protein [Arabidopsis
           thaliana] gi|21689887|gb|AAM67504.1| unknown protein
           [Arabidopsis thaliana] gi|332194396|gb|AEE32517.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 532

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/97 (59%), Positives = 72/97 (74%)
 Frame = -1

Query: 292 RLVPSLKLQTDKDIYRPGDSVAVTITVHNPGKETNKHETDNDAKWSLLLEKLSFEIKGYE 113
           ++ PSL +QTDKD+YRPGDS+ VTI V       N H  DN +  S+L+EKLSFE+KG E
Sbjct: 27  KIKPSLSVQTDKDVYRPGDSIFVTIEV------ANSH--DNASNPSILVEKLSFEVKGLE 78

Query: 112 KLDTQWFATKKQLSGPRHRRGEHVFLDCSTPSIISNQ 2
           KLD QWF+T+K   G + RRGEH+FLD STPS+ISNQ
Sbjct: 79  KLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQ 115


>ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago
           truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi
           transport protein RGP1-like protein [Medicago
           truncatula]
          Length = 529

 Score =  113 bits (282), Expect = 2e-23
 Identities = 54/96 (56%), Positives = 69/96 (71%)
 Frame = -1

Query: 289 LVPSLKLQTDKDIYRPGDSVAVTITVHNPGKETNKHETDNDAKWSLLLEKLSFEIKGYEK 110
           +VP+LKL+TDK +YRPGD V +TI + NP              +S L+E+LSFEI+G EK
Sbjct: 27  IVPTLKLETDKQVYRPGDPVIITIQISNPSNG-----------YSFLMERLSFEIRGIEK 75

Query: 109 LDTQWFATKKQLSGPRHRRGEHVFLDCSTPSIISNQ 2
           LDTQWFAT+K L G R RRGEHVF+D STP +++NQ
Sbjct: 76  LDTQWFATQKPLPGSRQRRGEHVFVDSSTPILVANQ 111


Top