BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00036775
         (741 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37903.3| unnamed protein product [Vitis vinifera]              238   7e-61
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   238   7e-61
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   238   7e-61
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   224   1e-56
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   223   3e-56

>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  238 bits (608), Expect = 7e-61
 Identities = 119/203 (58%), Positives = 152/203 (74%)
 Frame = +3

Query: 129 NKKISHLIRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVV 308
           N  I+   + G+  EA+ VFD +  RN  +WN+M++GY K   I  ARKLFD+MP +DVV
Sbjct: 99  NHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVV 158

Query: 309 SWNTMVIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHS 488
           SWNTMVI  A+ G++ +A  FY++ R+L +  N FSFAGVL  CV+L+E GLT  +QVH 
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLT--RQVHG 216

Query: 489 QVLVSGFLSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEK 668
           Q+LV+GFLSN+VLSSS++DAY K GLM DA+K+FD M  RDVLAWTTMVSGYA  GDM+ 
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKS 276

Query: 669 ARILFDEIPDPNPVSWTSLISGY 737
           A  LF E+P+ NPVSWT+LISGY
Sbjct: 277 ANELFVEMPEKNPVSWTALISGY 299



 Score =  109 bits (272), Expect = 7e-22
 Identities = 56/182 (30%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
 Frame = +3

Query: 150 IRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVVSWNTMVI 329
           ++ G + +A+ +FD +  R+ + W +M++GY K  ++  A +LF EMP ++ VSW  ++ 
Sbjct: 238 VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALIS 297

Query: 330 MFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGF 509
            +A+NG    A   + ++    V  ++F+F+  L AC  +    L   KQ+H+ +L   F
Sbjct: 298 GYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA--SLKHGKQIHAYLLRINF 355

Query: 510 LSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVR-DVLAWTTMVSGYALLGDMEKARILFD 686
             N ++ S+++D Y+K G +   +KVFD M  + DV+ W T++S  A  G  E+A  + D
Sbjct: 356 QPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLD 415

Query: 687 EI 692
           ++
Sbjct: 416 DM 417



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = +3

Query: 324 VIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVS 503
           ++   K    ++A +    L +  + ++  + A +L  C   +   L   K+VH  + ++
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCA--DSRALREGKRVHLHLKLT 88

Query: 504 GFLS-NLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEKARIL 680
           G       LS+ +++ YAK G   +A+KVFD+M  R++ +W  M+SGYA LG ++ AR L
Sbjct: 89  GLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKL 148

Query: 681 FDEIPDPNPVSWTSLI 728
           FD++P+ + VSW +++
Sbjct: 149 FDKMPEKDVVSWNTMV 164


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  238 bits (608), Expect = 7e-61
 Identities = 119/203 (58%), Positives = 153/203 (75%)
 Frame = +3

Query: 129 NKKISHLIRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVV 308
           N  I+   + G    A  VFD +  RN  +WN M++GY K  +I  ARKLFD+MP +DVV
Sbjct: 90  NHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVV 149

Query: 309 SWNTMVIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHS 488
           SWNTMVI +AK+GF +DA  FY +LR+L +G NE+SFAG+L  CV+++E  L L+KQ H 
Sbjct: 150 SWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKE--LELSKQAHG 207

Query: 489 QVLVSGFLSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEK 668
           QVLV+GFLSNLV+SSS++DAYAK   M DA+++FD M +RDVLAWTTMVSGYA  GD+E 
Sbjct: 208 QVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEA 267

Query: 669 ARILFDEIPDPNPVSWTSLISGY 737
           AR LFD +P+ NPV+WTSLI+GY
Sbjct: 268 ARELFDLMPEKNPVAWTSLIAGY 290



 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 49/181 (27%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
 Frame = +3

Query: 153 RTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVVSWNTMVIM 332
           +   + +A+ +FD +  R+ + W +M++GY +  ++  AR+LFD MP ++ V+W +++  
Sbjct: 230 KCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAG 289

Query: 333 FAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGFL 512
           +A++     A   + ++  L +  ++F+F+  L  C       L   KQ+H  ++ +   
Sbjct: 290 YARHDLGHKALELFTKMMALNIRPDQFTFSSCL--CASASIASLNHGKQIHGYLIRTNIR 347

Query: 513 SNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVR-DVLAWTTMVSGYALLGDMEKARILFDE 689
            N ++ SS++D Y+K G +   + VFD M  + DV+ W T++S  A  G  ++A  +FD+
Sbjct: 348 PNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDD 407

Query: 690 I 692
           +
Sbjct: 408 M 408



 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +3

Query: 462 LTLTKQVHSQVLVSGFLS-NLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVS 638
           L L K VH  + V+G    N  L++ +++ Y+K G    A KVFD M  R++ +W  M+S
Sbjct: 66  LKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLS 125

Query: 639 GYALLGDMEKARILFDEIPDPNPVSWTSLISGY 737
           GYA LG ++ AR LFD++P+ + VSW +++  Y
Sbjct: 126 GYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAY 158


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  238 bits (608), Expect = 7e-61
 Identities = 119/203 (58%), Positives = 152/203 (74%)
 Frame = +3

Query: 129 NKKISHLIRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVV 308
           N  I+   + G+  EA+ VFD +  RN  +WN+M++GY K   I  ARKLFD+MP +DVV
Sbjct: 99  NHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVV 158

Query: 309 SWNTMVIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHS 488
           SWNTMVI  A+ G++ +A  FY++ R+L +  N FSFAGVL  CV+L+E GLT  +QVH 
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLT--RQVHG 216

Query: 489 QVLVSGFLSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEK 668
           Q+LV+GFLSN+VLSSS++DAY K GLM DA+K+FD M  RDVLAWTTMVSGYA  GDM+ 
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKS 276

Query: 669 ARILFDEIPDPNPVSWTSLISGY 737
           A  LF E+P+ NPVSWT+LISGY
Sbjct: 277 ANELFVEMPEKNPVSWTALISGY 299



 Score =  109 bits (272), Expect = 7e-22
 Identities = 56/182 (30%), Positives = 104/182 (57%), Gaps = 1/182 (0%)
 Frame = +3

Query: 150 IRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVVSWNTMVI 329
           ++ G + +A+ +FD +  R+ + W +M++GY K  ++  A +LF EMP ++ VSW  ++ 
Sbjct: 238 VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALIS 297

Query: 330 MFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGF 509
            +A+NG    A   + ++    V  ++F+F+  L AC  +    L   KQ+H+ +L   F
Sbjct: 298 GYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA--SLKHGKQIHAYLLRINF 355

Query: 510 LSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVR-DVLAWTTMVSGYALLGDMEKARILFD 686
             N ++ S+++D Y+K G +   +KVFD M  + DV+ W T++S  A  G  E+A  + D
Sbjct: 356 QPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLD 415

Query: 687 EI 692
           ++
Sbjct: 416 DM 417



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 41/136 (30%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = +3

Query: 324 VIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVS 503
           ++   K    ++A +    L +  + ++  + A +L  C   +   L   K+VH  + ++
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCA--DSRALREGKRVHLHLKLT 88

Query: 504 GFLS-NLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEKARIL 680
           G       LS+ +++ YAK G   +A+KVFD+M  R++ +W  M+SGYA LG ++ AR L
Sbjct: 89  GLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKL 148

Query: 681 FDEIPDPNPVSWTSLI 728
           FD++P+ + VSW +++
Sbjct: 149 FDKMPEKDVVSWNTMV 164


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  224 bits (571), Expect = 1e-56
 Identities = 115/203 (56%), Positives = 143/203 (70%)
 Frame = +3

Query: 129 NKKISHLIRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVV 308
           N  I      GR  EA+ VFD +  RN  +WN M+ GY K  ++  ARKLFD M  +DVV
Sbjct: 102 NHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVV 161

Query: 309 SWNTMVIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHS 488
           SWNT+V+ +AK G +++A   Y   R+L +G N FSFAGVLI CV+L+E  L L KQVH 
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKE--LQLAKQVHG 219

Query: 489 QVLVSGFLSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEK 668
           QVLV+GFLSNLVLSSSIVDAYAK G M  A+ +FD M V+D+ AWTT+VSGYA  GDM  
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279

Query: 669 ARILFDEIPDPNPVSWTSLISGY 737
           A  LF ++P+ NPVSW++LISGY
Sbjct: 280 ASELFHQMPEKNPVSWSALISGY 302



 Score =  103 bits (258), Expect = 3e-20
 Identities = 54/198 (27%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
 Frame = +3

Query: 153 RTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVVSWNTMVIM 332
           + G +  A+ +FD +  ++   W ++++GY K  ++  A +LF +MP ++ VSW+ ++  
Sbjct: 242 KCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISG 301

Query: 333 FAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGFL 512
           +A+N    +A  ++ ++ K  +   +++F+  L AC  +    L   KQVH  ++ + F 
Sbjct: 302 YARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIA--ALKHGKQVHGYLIRTYFR 359

Query: 513 SNLVLSSSIVDAYAKSGLMSDAQKVFDRM-RVRDVLAWTTMVSGYALLGDMEKARILFDE 689
            N ++ SS++D Y+K G++  +  VF  M   +DV+ W TM+S  A  G  EKA  +F++
Sbjct: 360 CNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFND 419

Query: 690 IPD----PNPVSWTSLIS 731
           + +    P+ +++  ++S
Sbjct: 420 MVESGLKPDRITFIVILS 437



 Score = 70.1 bits (170), Expect = 5e-10
 Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
 Frame = +3

Query: 336 AKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGFLS 515
           +  G   +A ++ ++L +  V +    F  +L  C + + F     K VH  +  +GF  
Sbjct: 38  SSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYF--KGGKCVHLHLKHTGFKR 95

Query: 516 -NLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEKARILFDEI 692
              ++++ ++  Y + G   +A+KVFD+M VR++ +W  M++GYA LGD+  AR LFD +
Sbjct: 96  PTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM 155

Query: 693 PDPNPVSWTSLISGY 737
            + + VSW +++  Y
Sbjct: 156 MEKDVVSWNTIVLAY 170


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  223 bits (568), Expect = 3e-56
 Identities = 114/203 (56%), Positives = 143/203 (70%)
 Frame = +3

Query: 129 NKKISHLIRTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVV 308
           N  I      GR  EA+ VFD +  RN  +WN M+ GY K  ++  ARKLFD M  +DVV
Sbjct: 102 NHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVV 161

Query: 309 SWNTMVIMFAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHS 488
           SWNT+V+ +AK G +++A   Y   R+L +G N FSFAGVLI CV+L+E  L L KQVH 
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKE--LQLAKQVHG 219

Query: 489 QVLVSGFLSNLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEK 668
           QVLV+GFLSNLVLSSSIVDAY+K G M  A+ +FD M V+D+ AWTT+VSGYA  GDM  
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279

Query: 669 ARILFDEIPDPNPVSWTSLISGY 737
           A  LF ++P+ NPVSW++LISGY
Sbjct: 280 ASELFHQMPEKNPVSWSALISGY 302



 Score =  103 bits (258), Expect = 3e-20
 Identities = 54/198 (27%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
 Frame = +3

Query: 153 RTGRLNEAKAVFDSLQHRNTVTWNSMITGYIKNREI*QARKLFDEMPHRDVVSWNTMVIM 332
           + G +  A+ +FD +  ++   W ++++GY K  ++  A +LF +MP ++ VSW+ ++  
Sbjct: 242 KCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISG 301

Query: 333 FAKNGFYSDAFAFYNQLRKLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVSGFL 512
           +A+N    +A  ++ ++ K  +   +++F+  L AC  +    L   KQVH  ++ + F 
Sbjct: 302 YARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIA--ALKHGKQVHGYLIRTYFR 359

Query: 513 SNLVLSSSIVDAYAKSGLMSDAQKVFDRM-RVRDVLAWTTMVSGYALLGDMEKARILFDE 689
            N ++ SS++D Y+K G++  +  VF  M   +DV+ W TM+S  A  G  EKA  +F++
Sbjct: 360 CNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFND 419

Query: 690 IPD----PNPVSWTSLIS 731
           + +    P+ +++  ++S
Sbjct: 420 MVESGLKPDRITFIVILS 437



 Score = 70.1 bits (170), Expect = 5e-10
 Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
 Frame = +3

Query: 336 AKNGFYSDAFAFYNQLR----KLPVGVNEFSFAGVLIACVRLEEFGLTLTKQVHSQVLVS 503
           +  G   +A ++ ++L     +LP G+    F  +L  C + + F     K VH  +  +
Sbjct: 38  SSQGRLPEALSYLDRLAQRGIRLPTGI----FVDLLRLCAKAKYF--KGGKCVHLHLKHT 91

Query: 504 GFLS-NLVLSSSIVDAYAKSGLMSDAQKVFDRMRVRDVLAWTTMVSGYALLGDMEKARIL 680
           GF     ++++ ++  Y + G   +A+KVFD+M VR++ +W  M++GYA LGD+  AR L
Sbjct: 92  GFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKL 151

Query: 681 FDEIPDPNPVSWTSLISGY 737
           FD + + + VSW +++  Y
Sbjct: 152 FDRMMEKDVVSWNTIVLAY 170